Query gi|254781028|ref|YP_003065441.1| putative Mg2+ chelatase family protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 87 No_of_seqs 100 out of 998 Neff 4.1 Searched_HMMs 13730 Date Wed Jun 1 11:12:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781028.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1rrea_ d.14.1.10 (A:) ATP-dep 98.4 3.5E-07 2.5E-11 61.1 7.4 75 2-76 2-78 (182) 2 d1xhka_ d.14.1.10 (A:) ATP-dep 97.6 9.5E-05 6.9E-09 46.8 7.5 76 2-77 4-88 (185) 3 d1qd1a1 d.58.34.1 (A:2-180) Fo 49.4 9.2 0.00067 17.6 6.8 53 14-66 31-83 (179) 4 d2fsja2 c.55.1.12 (A:1-164) Hy 32.1 16 0.0012 16.2 2.8 49 32-80 104-157 (164) 5 d1j3ma_ d.129.7.1 (A:) Hypothe 24.9 17 0.0012 16.0 1.9 39 38-76 7-58 (127) 6 d1r44a_ d.65.1.4 (A:) D-Ala-D- 22.7 25 0.0018 15.0 2.4 26 39-64 157-182 (202) 7 d3frua2 d.19.1.1 (A:1-178) Fc 18.8 30 0.0022 14.6 2.1 18 22-39 15-32 (178) 8 d1c16a2 d.19.1.1 (A:1-180) Cla 17.8 26 0.0019 14.9 1.6 16 24-39 15-30 (164) 9 d1w9ya1 b.82.2.1 (A:2-308) 1-a 17.6 27 0.002 14.8 1.7 36 27-62 2-37 (307) 10 d2hsga1 a.35.1.5 (A:2-58) Gluc 16.9 34 0.0025 14.2 2.1 19 40-58 28-46 (57) No 1 >d1rrea_ d.14.1.10 (A:) ATP-dependent protease Lon (La), catalytic domain {Escherichia coli [TaxId: 562]} Probab=98.43 E-value=3.5e-07 Score=61.11 Aligned_cols=75 Identities=11% Similarity=0.140 Sum_probs=64.0 Q ss_pred EEEEEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCEEEEEEECHH Q ss_conf 369999999733017899999846897437996162588899989999999977984421128--940479963758 Q gi|254781028|r 2 ISRISTIAFQGIKGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNEL--PSIYLQLIYQKK 76 (87) Q Consensus 2 lski~S~al~Gi~a~~V~VEv~is~GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~~~--p~~~~tinl~p~ 76 (87) +++++..++.+..+.+++||++..+|.+.+.++|+++...+|+.+|.++++++++..+..... ....+.+++.+. T Consensus 2 iG~v~GL~v~~~gG~ll~IEv~~~~G~g~~~~tG~~~~~~~es~~~a~~~~~~~~~~~~~~~~~~~~~di~i~~~~~ 78 (182) T d1rrea_ 2 VGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEG 78 (182) T ss_dssp CEEEEEEEEETTEEEEEEEEEEEEECSSCEEEESSBCHHHHHHHHHHHHHHHHTHHHHTCCTTTTTSEEEEEECSST T ss_pred EEEEEEEEEECCCCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECC T ss_conf 69999879977898899999999858886797157402346788889999999998808982000031067874036 No 2 >d1xhka_ d.14.1.10 (A:) ATP-dependent protease Lon (La), catalytic domain {Methanococcus jannaschii [TaxId: 2190]} Probab=97.64 E-value=9.5e-05 Score=46.84 Aligned_cols=76 Identities=11% Similarity=0.170 Sum_probs=55.9 Q ss_pred EEEEEEEEEEEE--EEEEEEEEEECCCCC-CEEEEEECCH----HHHHHHHHHHHHHHHHCCCCCCCC--CCCCEEEEEE Q ss_conf 369999999733--017899999846897-4379961625----888999899999999779844211--2894047996 Q gi|254781028|r 2 ISRISTIAFQGI--KGIPVEVQVMVSPGR-VGVQIVGLPD----KAVIESRERIQSHFIHAGLLFLVN--ELPSIYLQLI 72 (87) Q Consensus 2 lski~S~al~Gi--~a~~V~VEv~is~Gl-P~f~iVGLpD----~aVkESreRVrsAl~nsGl~F~~~--~~p~~~~tin 72 (87) +++++..++.+. .+.++.+|+++..+. |++..+|+.. .+++++++|+++++.+.++.+.-. .|+...+++| T Consensus 4 iG~vnGLav~~~G~~G~~~~i~v~i~~~~~~g~~~~~~~G~v~keS~~~A~~~v~~~~~~~~~~~~~~~~~~~~~di~i~ 83 (185) T d1xhka_ 4 VGVIYGLAVLGAGGIGDVTKIIVQILESKNPGTHLLNISGDIAKHSITLASALSKKLVAEKKLPLPKKDIDLNNKEIYIQ 83 (185) T ss_dssp TTEEEEEECCSSSSCCEEEEEEEEEEECSSCEEEEESSCHHHHHHHHHHHHHHHHHHHHTTSSCCCSSCCCSTTEEEEEE T ss_pred EEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEE T ss_conf 59998999988999775299999999567897555750350016788899999999998627677744355450005674 Q ss_pred ECHHH Q ss_conf 37588 Q gi|254781028|r 73 YQKKD 77 (87) Q Consensus 73 l~p~d 77 (87) +.|++ T Consensus 84 ~~~~~ 88 (185) T d1xhka_ 84 FSQSY 88 (185) T ss_dssp ESSCC T ss_pred CCHHH T ss_conf 54554 No 3 >d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]} Probab=49.39 E-value=9.2 Score=17.61 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=46.8 Q ss_pred EEEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 01789999984689743799616258889998999999997798442112894 Q gi|254781028|r 14 KGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNELPS 66 (87) Q Consensus 14 ~a~~V~VEv~is~GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~~~p~ 66 (87) ....++|+.|..-.--.|+++|-||.-.+-+..=++.|+....+.-|.-+-|- T Consensus 31 gv~lL~v~~D~d~NRtV~T~vg~p~~v~~aa~~~~~~A~e~IDm~~H~G~HPR 83 (179) T d1qd1a1 31 GCVLLDVDSGPSTNRTVYTFVGRPEDVVEGALNAARAAYQLIDMSRHHGEHPR 83 (179) T ss_dssp TCEEEEEEEETTTTEEEEEEEECHHHHHHHHHHHHHHHHHHCCGGGCCCSSCC T ss_pred CCEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC T ss_conf 96898488998889748999648088889999999999985583313455886 No 4 >d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Probab=32.12 E-value=16 Score=16.15 Aligned_cols=49 Identities=10% Similarity=-0.120 Sum_probs=31.6 Q ss_pred EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE-----EECHHHHHH Q ss_conf 9961625888999899999999779844211289404799-----637588999 Q gi|254781028|r 32 QIVGLPDKAVIESRERIQSHFIHAGLLFLVNELPSIYLQL-----IYQKKDLIM 80 (87) Q Consensus 32 ~iVGLpD~aVkESreRVrsAl~nsGl~F~~~~~p~~~~ti-----nl~p~dl~~ 80 (87) -.+|||-+.-.+-+||.+..+++........+=..+.++| .-||.--++ T Consensus 104 lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~ga~~ 157 (164) T d2fsja2 104 IGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAAL 157 (164) T ss_dssp EEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHH T ss_pred EEECCCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEEEEEEEECCCHHHHH T ss_conf 992489889799999999996588734783199189999919999648789999 No 5 >d1j3ma_ d.129.7.1 (A:) Hypothetical protein TT1751 (TTHA1732) {Thermus thermophilus HB8 [TaxId: 300852]} Probab=24.87 E-value=17 Score=16.05 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=26.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCC-------------CCCCCEEEEEEECHH Q ss_conf 588899989999999977984421-------------128940479963758 Q gi|254781028|r 38 DKAVIESRERIQSHFIHAGLLFLV-------------NELPSIYLQLIYQKK 76 (87) Q Consensus 38 D~aVkESreRVrsAl~nsGl~F~~-------------~~~p~~~~tinl~p~ 76 (87) ..++.|+.+|+++|++..||.-+. .++|..+|-.--.|+ T Consensus 7 ~~sf~e~~~~l~~al~~~G~~v~~~~d~~~~~~~~~~~~~~~~~i~~~cnp~ 58 (127) T d1j3ma_ 7 KATLAEARAQVEAALKEEGFGILTEIDVAATLKAKLGLEKPPYLILGACNPN 58 (127) T ss_dssp SSCHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHCCCCCCEEEEEEECHH T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCCEEEEEECCHH T ss_conf 4989999999999999779989998477899986343578980899988858 No 6 >d1r44a_ d.65.1.4 (A:) D-Ala-D-Ala dipeptidase VanX {Enterococcus faecium [TaxId: 1352]} Probab=22.75 E-value=25 Score=15.04 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 88899989999999977984421128 Q gi|254781028|r 39 KAVIESRERIQSHFIHAGLLFLVNEL 64 (87) Q Consensus 39 ~aVkESreRVrsAl~nsGl~F~~~~~ 64 (87) ...++-|.+.+.++...||.-+..|| T Consensus 157 ~~~~~NR~lL~~~M~~aGF~~y~~EW 182 (202) T d1r44a_ 157 CNEAQNRRRLRSIMENSGFEAYSLEW 182 (202) T ss_dssp HHHHHHHHHHHHHHHTTTEEECTTCT T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 99999999999999983882698826 No 7 >d3frua2 d.19.1.1 (A:1-178) Fc (IgG) receptor, alpha-1 and alpha-2 domains {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=18.77 E-value=30 Score=14.62 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=14.1 Q ss_pred EECCCCCCEEEEEECCHH Q ss_conf 984689743799616258 Q gi|254781028|r 22 VMVSPGRVGVQIVGLPDK 39 (87) Q Consensus 22 v~is~GlP~f~iVGLpD~ 39 (87) .+.++|+|.|..||..|. T Consensus 15 S~p~~g~P~f~~vg~vDd 32 (178) T d3frua2 15 SDLSTGLPSFWATGWLGA 32 (178) T ss_dssp SCCTTCCCSEEEEEEETT T ss_pred CCCCCCCCEEEEEEEECC T ss_conf 589899950899999999 No 8 >d1c16a2 d.19.1.1 (A:1-180) Class I MHC homolog {Mouse (Mus musculus), t22 [TaxId: 10090]} Probab=17.79 E-value=26 Score=14.94 Aligned_cols=16 Identities=31% Similarity=0.275 Sum_probs=13.2 Q ss_pred CCCCCCEEEEEECCHH Q ss_conf 4689743799616258 Q gi|254781028|r 24 VSPGRVGVQIVGLPDK 39 (87) Q Consensus 24 is~GlP~f~iVGLpD~ 39 (87) -++|+|.|.+||..|. T Consensus 15 p~~g~P~f~~vg~vDd 30 (164) T d1c16a2 15 PGLGEPWFIIVGYVDD 30 (164) T ss_dssp SSSSCCEEEEEEEETT T ss_pred CCCCCCEEEEEEEECC T ss_conf 9899967999999899 No 9 >d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Probab=17.58 E-value=27 Score=14.82 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=22.6 Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 974379961625888999899999999779844211 Q gi|254781028|r 27 GRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVN 62 (87) Q Consensus 27 GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~ 62 (87) .+|.+.+-.+-...-.+..+.++.|.++.||-.++| T Consensus 2 ~lPvIDl~~~~~~~r~~~~~~l~~A~~~~GFF~l~n 37 (307) T d1w9ya1 2 NFPIISLDKVNGVERAATMEMIKDACENWGFFELVN 37 (307) T ss_dssp CCCEEEGGGGGSTTHHHHHHHHHHHHHHTSEEEEES T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEEC T ss_conf 989488702699579999999999987493899984 No 10 >d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]} Probab=16.88 E-value=34 Score=14.24 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=16.2 Q ss_pred HHHHHHHHHHHHHHHCCCC Q ss_conf 8899989999999977984 Q gi|254781028|r 40 AVIESRERIQSHFIHAGLL 58 (87) Q Consensus 40 aVkESreRVrsAl~nsGl~ 58 (87) --.|.|+||+.|++-.||. T Consensus 28 Vs~~tr~rV~~aa~~lgY~ 46 (57) T d2hsga1 28 VKPSTRKKVLETIERLGYR 46 (57) T ss_dssp SCHHHHHHHHHHHHHHTCC T ss_pred CCHHHHHHHHHHHHHHCCC T ss_conf 7989999999999998869 Done!