Query         gi|254781028|ref|YP_003065441.1| putative Mg2+ chelatase family protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 87
No_of_seqs    100 out of 998
Neff          4.1 
Searched_HMMs 13730
Date          Wed Jun  1 11:12:31 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781028.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1rrea_ d.14.1.10 (A:) ATP-dep  98.4 3.5E-07 2.5E-11   61.1   7.4   75    2-76      2-78  (182)
  2 d1xhka_ d.14.1.10 (A:) ATP-dep  97.6 9.5E-05 6.9E-09   46.8   7.5   76    2-77      4-88  (185)
  3 d1qd1a1 d.58.34.1 (A:2-180) Fo  49.4     9.2 0.00067   17.6   6.8   53   14-66     31-83  (179)
  4 d2fsja2 c.55.1.12 (A:1-164) Hy  32.1      16  0.0012   16.2   2.8   49   32-80    104-157 (164)
  5 d1j3ma_ d.129.7.1 (A:) Hypothe  24.9      17  0.0012   16.0   1.9   39   38-76      7-58  (127)
  6 d1r44a_ d.65.1.4 (A:) D-Ala-D-  22.7      25  0.0018   15.0   2.4   26   39-64    157-182 (202)
  7 d3frua2 d.19.1.1 (A:1-178) Fc   18.8      30  0.0022   14.6   2.1   18   22-39     15-32  (178)
  8 d1c16a2 d.19.1.1 (A:1-180) Cla  17.8      26  0.0019   14.9   1.6   16   24-39     15-30  (164)
  9 d1w9ya1 b.82.2.1 (A:2-308) 1-a  17.6      27   0.002   14.8   1.7   36   27-62      2-37  (307)
 10 d2hsga1 a.35.1.5 (A:2-58) Gluc  16.9      34  0.0025   14.2   2.1   19   40-58     28-46  (57)

No 1  
>d1rrea_ d.14.1.10 (A:) ATP-dependent protease Lon (La), catalytic domain {Escherichia coli [TaxId: 562]}
Probab=98.43  E-value=3.5e-07  Score=61.11  Aligned_cols=75  Identities=11%  Similarity=0.140  Sum_probs=64.0

Q ss_pred             EEEEEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCEEEEEEECHH
Q ss_conf             369999999733017899999846897437996162588899989999999977984421128--940479963758
Q gi|254781028|r    2 ISRISTIAFQGIKGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNEL--PSIYLQLIYQKK   76 (87)
Q Consensus         2 lski~S~al~Gi~a~~V~VEv~is~GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~~~--p~~~~tinl~p~   76 (87)
                      +++++..++.+..+.+++||++..+|.+.+.++|+++...+|+.+|.++++++++..+.....  ....+.+++.+.
T Consensus         2 iG~v~GL~v~~~gG~ll~IEv~~~~G~g~~~~tG~~~~~~~es~~~a~~~~~~~~~~~~~~~~~~~~~di~i~~~~~   78 (182)
T d1rrea_           2 VGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEG   78 (182)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEECSSCEEEESSBCHHHHHHHHHHHHHHHHTHHHHTCCTTTTTSEEEEEECSST
T ss_pred             EEEEEEEEEECCCCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECC
T ss_conf             69999879977898899999999858886797157402346788889999999998808982000031067874036


No 2  
>d1xhka_ d.14.1.10 (A:) ATP-dependent protease Lon (La), catalytic domain {Methanococcus jannaschii [TaxId: 2190]}
Probab=97.64  E-value=9.5e-05  Score=46.84  Aligned_cols=76  Identities=11%  Similarity=0.170  Sum_probs=55.9

Q ss_pred             EEEEEEEEEEEE--EEEEEEEEEECCCCC-CEEEEEECCH----HHHHHHHHHHHHHHHHCCCCCCCC--CCCCEEEEEE
Q ss_conf             369999999733--017899999846897-4379961625----888999899999999779844211--2894047996
Q gi|254781028|r    2 ISRISTIAFQGI--KGIPVEVQVMVSPGR-VGVQIVGLPD----KAVIESRERIQSHFIHAGLLFLVN--ELPSIYLQLI   72 (87)
Q Consensus         2 lski~S~al~Gi--~a~~V~VEv~is~Gl-P~f~iVGLpD----~aVkESreRVrsAl~nsGl~F~~~--~~p~~~~tin   72 (87)
                      +++++..++.+.  .+.++.+|+++..+. |++..+|+..    .+++++++|+++++.+.++.+.-.  .|+...+++|
T Consensus         4 iG~vnGLav~~~G~~G~~~~i~v~i~~~~~~g~~~~~~~G~v~keS~~~A~~~v~~~~~~~~~~~~~~~~~~~~~di~i~   83 (185)
T d1xhka_           4 VGVIYGLAVLGAGGIGDVTKIIVQILESKNPGTHLLNISGDIAKHSITLASALSKKLVAEKKLPLPKKDIDLNNKEIYIQ   83 (185)
T ss_dssp             TTEEEEEECCSSSSCCEEEEEEEEEEECSSCEEEEESSCHHHHHHHHHHHHHHHHHHHHTTSSCCCSSCCCSTTEEEEEE
T ss_pred             EEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEE
T ss_conf             59998999988999775299999999567897555750350016788899999999998627677744355450005674


Q ss_pred             ECHHH
Q ss_conf             37588
Q gi|254781028|r   73 YQKKD   77 (87)
Q Consensus        73 l~p~d   77 (87)
                      +.|++
T Consensus        84 ~~~~~   88 (185)
T d1xhka_          84 FSQSY   88 (185)
T ss_dssp             ESSCC
T ss_pred             CCHHH
T ss_conf             54554


No 3  
>d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]}
Probab=49.39  E-value=9.2  Score=17.61  Aligned_cols=53  Identities=17%  Similarity=0.170  Sum_probs=46.8

Q ss_pred             EEEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             01789999984689743799616258889998999999997798442112894
Q gi|254781028|r   14 KGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNELPS   66 (87)
Q Consensus        14 ~a~~V~VEv~is~GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~~~p~   66 (87)
                      ....++|+.|..-.--.|+++|-||.-.+-+..=++.|+....+.-|.-+-|-
T Consensus        31 gv~lL~v~~D~d~NRtV~T~vg~p~~v~~aa~~~~~~A~e~IDm~~H~G~HPR   83 (179)
T d1qd1a1          31 GCVLLDVDSGPSTNRTVYTFVGRPEDVVEGALNAARAAYQLIDMSRHHGEHPR   83 (179)
T ss_dssp             TCEEEEEEEETTTTEEEEEEEECHHHHHHHHHHHHHHHHHHCCGGGCCCSSCC
T ss_pred             CCEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
T ss_conf             96898488998889748999648088889999999999985583313455886


No 4  
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=32.12  E-value=16  Score=16.15  Aligned_cols=49  Identities=10%  Similarity=-0.120  Sum_probs=31.6

Q ss_pred             EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE-----EECHHHHHH
Q ss_conf             9961625888999899999999779844211289404799-----637588999
Q gi|254781028|r   32 QIVGLPDKAVIESRERIQSHFIHAGLLFLVNELPSIYLQL-----IYQKKDLIM   80 (87)
Q Consensus        32 ~iVGLpD~aVkESreRVrsAl~nsGl~F~~~~~p~~~~ti-----nl~p~dl~~   80 (87)
                      -.+|||-+.-.+-+||.+..+++........+=..+.++|     .-||.--++
T Consensus       104 lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~ga~~  157 (164)
T d2fsja2         104 IGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAAL  157 (164)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEEEEEEEECCCHHHHH
T ss_conf             992489889799999999996588734783199189999919999648789999


No 5  
>d1j3ma_ d.129.7.1 (A:) Hypothetical protein TT1751 (TTHA1732) {Thermus thermophilus HB8 [TaxId: 300852]}
Probab=24.87  E-value=17  Score=16.05  Aligned_cols=39  Identities=15%  Similarity=0.253  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCC-------------CCCCCEEEEEEECHH
Q ss_conf             588899989999999977984421-------------128940479963758
Q gi|254781028|r   38 DKAVIESRERIQSHFIHAGLLFLV-------------NELPSIYLQLIYQKK   76 (87)
Q Consensus        38 D~aVkESreRVrsAl~nsGl~F~~-------------~~~p~~~~tinl~p~   76 (87)
                      ..++.|+.+|+++|++..||.-+.             .++|..+|-.--.|+
T Consensus         7 ~~sf~e~~~~l~~al~~~G~~v~~~~d~~~~~~~~~~~~~~~~~i~~~cnp~   58 (127)
T d1j3ma_           7 KATLAEARAQVEAALKEEGFGILTEIDVAATLKAKLGLEKPPYLILGACNPN   58 (127)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHCCCCCCEEEEEEECHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf             4989999999999999779989998477899986343578980899988858


No 6  
>d1r44a_ d.65.1.4 (A:) D-Ala-D-Ala dipeptidase VanX {Enterococcus faecium [TaxId: 1352]}
Probab=22.75  E-value=25  Score=15.04  Aligned_cols=26  Identities=19%  Similarity=0.188  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             88899989999999977984421128
Q gi|254781028|r   39 KAVIESRERIQSHFIHAGLLFLVNEL   64 (87)
Q Consensus        39 ~aVkESreRVrsAl~nsGl~F~~~~~   64 (87)
                      ...++-|.+.+.++...||.-+..||
T Consensus       157 ~~~~~NR~lL~~~M~~aGF~~y~~EW  182 (202)
T d1r44a_         157 CNEAQNRRRLRSIMENSGFEAYSLEW  182 (202)
T ss_dssp             HHHHHHHHHHHHHHHTTTEEECTTCT
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99999999999999983882698826


No 7  
>d3frua2 d.19.1.1 (A:1-178) Fc (IgG) receptor, alpha-1 and alpha-2 domains {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.77  E-value=30  Score=14.62  Aligned_cols=18  Identities=17%  Similarity=0.058  Sum_probs=14.1

Q ss_pred             EECCCCCCEEEEEECCHH
Q ss_conf             984689743799616258
Q gi|254781028|r   22 VMVSPGRVGVQIVGLPDK   39 (87)
Q Consensus        22 v~is~GlP~f~iVGLpD~   39 (87)
                      .+.++|+|.|..||..|.
T Consensus        15 S~p~~g~P~f~~vg~vDd   32 (178)
T d3frua2          15 SDLSTGLPSFWATGWLGA   32 (178)
T ss_dssp             SCCTTCCCSEEEEEEETT
T ss_pred             CCCCCCCCEEEEEEEECC
T ss_conf             589899950899999999


No 8  
>d1c16a2 d.19.1.1 (A:1-180) Class I MHC homolog {Mouse (Mus musculus), t22 [TaxId: 10090]}
Probab=17.79  E-value=26  Score=14.94  Aligned_cols=16  Identities=31%  Similarity=0.275  Sum_probs=13.2

Q ss_pred             CCCCCCEEEEEECCHH
Q ss_conf             4689743799616258
Q gi|254781028|r   24 VSPGRVGVQIVGLPDK   39 (87)
Q Consensus        24 is~GlP~f~iVGLpD~   39 (87)
                      -++|+|.|.+||..|.
T Consensus        15 p~~g~P~f~~vg~vDd   30 (164)
T d1c16a2          15 PGLGEPWFIIVGYVDD   30 (164)
T ss_dssp             SSSSCCEEEEEEEETT
T ss_pred             CCCCCCEEEEEEEECC
T ss_conf             9899967999999899


No 9  
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]}
Probab=17.58  E-value=27  Score=14.82  Aligned_cols=36  Identities=17%  Similarity=0.080  Sum_probs=22.6

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             974379961625888999899999999779844211
Q gi|254781028|r   27 GRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVN   62 (87)
Q Consensus        27 GlP~f~iVGLpD~aVkESreRVrsAl~nsGl~F~~~   62 (87)
                      .+|.+.+-.+-...-.+..+.++.|.++.||-.++|
T Consensus         2 ~lPvIDl~~~~~~~r~~~~~~l~~A~~~~GFF~l~n   37 (307)
T d1w9ya1           2 NFPIISLDKVNGVERAATMEMIKDACENWGFFELVN   37 (307)
T ss_dssp             CCCEEEGGGGGSTTHHHHHHHHHHHHHHTSEEEEES
T ss_pred             CCCEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEEC
T ss_conf             989488702699579999999999987493899984


No 10 
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=16.88  E-value=34  Score=14.24  Aligned_cols=19  Identities=11%  Similarity=0.170  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHCCCC
Q ss_conf             8899989999999977984
Q gi|254781028|r   40 AVIESRERIQSHFIHAGLL   58 (87)
Q Consensus        40 aVkESreRVrsAl~nsGl~   58 (87)
                      --.|.|+||+.|++-.||.
T Consensus        28 Vs~~tr~rV~~aa~~lgY~   46 (57)
T d2hsga1          28 VKPSTRKKVLETIERLGYR   46 (57)
T ss_dssp             SCHHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHHCCC
T ss_conf             7989999999999998869


Done!