RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781028|ref|YP_003065441.1| putative Mg2+ chelatase family
protein [Candidatus Liberibacter asiaticus str. psy62]
         (87 letters)



>gnl|CDD|30951 COG0606, COG0606, Predicted ATPase with chaperone activity
          [Posttranslational modification, protein turnover,
          chaperones].
          Length = 490

 Score = 54.1 bits (130), Expect = 8e-09
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 5/58 (8%)

Query: 15 GIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLF-----LVNELPSI 67
            PVEV+V +S G  G  IVGLPD AV ESRER+++   ++G  F      +N  P+ 
Sbjct: 2  APPVEVEVDISNGLPGFTIVGLPDTAVKESRERVRAALTNSGFEFPAKRITINLAPAD 59


>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic
          tubulins and is essential for cell division in
          prokaryotes.  FtsZ is capable of polymerizing in a
          GTP-driven process into structures similar to those
          formed by tubulin. FtsZ forms a ring-shaped septum at
          the site of bacterial cell division, which is required
          for constriction of cell membrane and cell envelope to
          yield two daughter cells..
          Length = 303

 Score = 25.6 bits (56), Expect = 3.0
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 11 QGIKGIPVEVQVMVSPGRVGVQIVG----LPDKAVIESRERIQSHFIHAGLLFLV 61
          Q + G+  E +V++   R      G    L  +A  E +E I +  +H  ++F+ 
Sbjct: 37 QDLLGLEAENRVLIGQARTKGLGAGANPELGAEAAEEVQEAIDNIPVHVDMVFIT 91


>gnl|CDD|32733 COG2909, MalT, ATP-dependent transcriptional regulator
           [Transcription].
          Length = 894

 Score = 24.5 bits (53), Expect = 7.4
 Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 41  VIESRERIQSHFIHAGLLFLVNELPSIYLQLI 72
           V++    I    +H  L FL+   P   L L+
Sbjct: 134 VLDDYHLISDPALHEALRFLLKHAPE-NLTLV 164


>gnl|CDD|177042 CHL00119, atpD, ATP synthase CF1 delta subunit; Validated.
          Length = 184

 Score = 24.2 bits (53), Expect = 7.9
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 8/36 (22%)

Query: 57  LLFLVNE-----LPSI---YLQLIYQKKDLIMIYLS 84
           L+ LV+      L +I   YL+L+Y+   + +  +S
Sbjct: 80  LMVLVDRGRIALLDAIIEKYLELVYKLASIKIAEVS 115


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.328    0.145    0.407 

Gapped
Lambda     K      H
   0.267   0.0790    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,031,075
Number of extensions: 47407
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 10
Length of query: 87
Length of database: 6,263,737
Length adjustment: 56
Effective length of query: 31
Effective length of database: 5,053,633
Effective search space: 156662623
Effective search space used: 156662623
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)