RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781028|ref|YP_003065441.1| putative Mg2+ chelatase family
protein [Candidatus Liberibacter asiaticus str. psy62]
(87 letters)
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The
N-terminal end matches very strongly a pfam
Mg_chelatase domain.
Length = 499
Score = 52.9 bits (127), Expect = 2e-08
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 5 ISTIAFQGIKGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNEL 64
+ + + G++ + ++V +S G G+ IVGLP+ V ESRER++S ++G F +
Sbjct: 1 VYSRSSLGVEAPLITIEVDISKGLPGITIVGLPETTVKESRERVKSAIKNSGFHFPAKRI 60
>gnl|CDD|182120 PRK09862, PRK09862, putative ATP-dependent protease; Provisional.
Length = 506
Score = 45.4 bits (107), Expect = 4e-06
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 2 ISRISTIAFQGIKGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLF 59
+S + T A G+ P+ V+V +S G G+ +VGLP+ V E+R+R++S I++G +
Sbjct: 3 LSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEY 60
>gnl|CDD|182576 PRK10594, PRK10594, murein L,D-transpeptidase; Provisional.
Length = 608
Score = 28.2 bits (63), Expect = 0.45
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 16 IPVEVQVMVS--PGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNELPSIY----L 69
IP + V VS + LP+ + +SR +++S +N+L +Y +
Sbjct: 36 IPGDSPVAVSEQGEALPQAQQPLPEGSAEKSRTQLESQLPAGYKPVYLNQLQLLYAARDM 95
Query: 70 QLIYQKKDLI 79
Q +++ +D +
Sbjct: 96 QPMWEDRDAV 105
>gnl|CDD|180971 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 616
Score = 25.4 bits (56), Expect = 3.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 23 MVSPGRVGVQIVGLPDKAVIE 43
MV PG+ Q+VGLP+ +
Sbjct: 567 MVPPGKSNAQMVGLPEHPELA 587
>gnl|CDD|163029 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 25.4 bits (55), Expect = 3.2
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 22 VMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNELPS 66
+V+ G GV + +E ++ Q+HFI AG + PS
Sbjct: 2000 FLVTGGAKGVTF-----ECALELAKQCQAHFILAGRSSFDDNEPS 2039
>gnl|CDD|164820 PHA00520, PHA00520, packaging NTPase P4.
Length = 330
Score = 25.2 bits (55), Expect = 4.0
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 6 STIAFQGIKGIPVEVQV-MVSPGRVG--VQIVGLPDKAVIESRERIQSHFIHAGLLFLV 61
I F VE QV +V PG G V I + A R H I +G+ +V
Sbjct: 72 KIIGFHKGDVAVVESQVKVVRPGHRGWDVIITSVLTVACAPVVHRWIGHRIESGVEVVV 130
>gnl|CDD|178451 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 24.8 bits (54), Expect = 5.3
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 17 PVEVQVMVS--PGRVGVQIVGLPDKAVIE 43
P EV+ ++S PG V +VG+PD + E
Sbjct: 449 PEEVEAVLSQHPGVASVVVVGVPDSRLTE 477
>gnl|CDD|150907 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 443
Score = 24.8 bits (54), Expect = 5.8
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 42 IESRERIQSHFIHAGLLFLVNELPSIYLQLIYQKKDLIM 80
I S E +Q H +H LV PS+ L+Y +M
Sbjct: 200 ISSHEVLQIHLVHD----LVG-YPSLD-PLVYSVFSRVM 232
>gnl|CDD|150518 pfam09856, DUF2083, Predicted transcriptional regulator
(DUF2083). This domain is found in various prokaryotic
transcriptional regulatory proteins belonging to the
XRE family. Its exact function is, as yet, unknown.
Length = 156
Score = 24.1 bits (53), Expect = 8.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 25 SPGRVGVQIVGLPD 38
PGR+ VQ+ +PD
Sbjct: 52 QPGRILVQLAEMPD 65
>gnl|CDD|168150 PRK05646, PRK05646, lipid A biosynthesis lauroyl acyltransferase;
Provisional.
Length = 310
Score = 24.0 bits (52), Expect = 9.3
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 9/31 (29%)
Query: 44 SRERIQSHFIH---------AGLLFLVNELP 65
R R ++ F+H GLL+LV +LP
Sbjct: 2 DRPRFRAAFLHPRFWPLWLGLGLLWLVVQLP 32
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.328 0.145 0.407
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,419,379
Number of extensions: 79209
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 18
Length of query: 87
Length of database: 5,994,473
Length adjustment: 56
Effective length of query: 31
Effective length of database: 4,784,425
Effective search space: 148317175
Effective search space used: 148317175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.1 bits)