RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781028|ref|YP_003065441.1| putative Mg2+ chelatase family
protein [Candidatus Liberibacter asiaticus str. psy62]
         (87 letters)



>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD,
          hydrolase; HET: MSE; 1.75A {Escherichia coli} (A:)
          Length = 200

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 7/56 (12%), Positives = 22/56 (39%)

Query: 1  MISRISTIAFQGIKGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAG 56
           + +++ +A+  + G  + ++    PG+  +   G   +   ES +   +      
Sbjct: 10 RVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVXQESIQAALTVVRARA 65


>1z0w_A Putative protease LA homolog type; ATP-dependent protease,
           catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A
           {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A
           1z0g_A 1z0t_A 1z0v_A (A:)
          Length = 207

 Score = 32.4 bits (73), Expect = 0.025
 Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 4/82 (4%)

Query: 9   AFQGIKGIPVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNELPSIY 68
           +   +  I  EV   +S     V   G   +   E+   + +         + N    I 
Sbjct: 24  SAGIVLPIIAEVTPSMSKSEGRVIATGRLQEIAREAVMNVSAIIKKYTGRDISNMDVHIQ 83

Query: 69  LQLIYQKKDL----IMIYLSFL 86
               Y+  +     I I  + +
Sbjct: 84  FVGTYEGVEGDSASISIATAVI 105


>1xhk_A Putative protease LA homolog; LON protease, ATP dependent,
          catalytic DYAD, hydrolase; HET: MES; 1.90A
          {Methanocaldococcus jannaschii} (A:)
          Length = 187

 Score = 27.4 bits (60), Expect = 0.78
 Identities = 4/67 (5%), Positives = 15/67 (22%), Gaps = 12/67 (17%)

Query: 3  SRISTIAFQGIKGIPVEVQVMVSPGR----------VGVQIVGLPDKAVIESRERIQSHF 52
          + +       +    + VQ++ S             +    + L      +     +   
Sbjct: 13 AVLGAGGIGDV--TKIIVQILESKNPGTHLLNISGDIAKHSITLASALSKKLVAEKKLPL 70

Query: 53 IHAGLLF 59
              +  
Sbjct: 71 PKKDIDL 77


>2wpn_B Periplasmic [nifese] hydrogenase, large subunit,
          selenocysteine-containing; metal-binding,
          oxidoreductase, oxygen tolerance; HET: FSX SBY PSW;
          2.04A {Desulfovibrio vulgaris} (B:84-224,B:327-388)
          Length = 203

 Score = 24.1 bits (52), Expect = 6.9
 Identities = 5/15 (33%), Positives = 7/15 (46%)

Query: 46 ERIQSHFIHAGLLFL 60
            +QSH +H   L  
Sbjct: 16 NYLQSHILHFYHLSA 30


>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein.,
           structural genomics, PSI, protein structure initiative;
           2.60A {Methanosarcina mazei} (A:173-292)
          Length = 120

 Score = 23.7 bits (51), Expect = 9.3
 Identities = 3/33 (9%), Positives = 12/33 (36%)

Query: 39  KAVIESRERIQSHFIHAGLLFLVNELPSIYLQL 71
            +     + +   F+H    ++ N +    ++ 
Sbjct: 84  GSFRVLPQNLYRXFVHGYQSYIYNIILCRRIEA 116


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.328    0.145    0.407 

Gapped
Lambda     K      H
   0.267   0.0436    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 611,424
Number of extensions: 23140
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 8
Length of query: 87
Length of database: 4,956,049
Length adjustment: 49
Effective length of query: 38
Effective length of database: 3,299,604
Effective search space: 125384952
Effective search space used: 125384952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.8 bits)