RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781028|ref|YP_003065441.1| putative Mg2+ chelatase family
protein [Candidatus Liberibacter asiaticus str. psy62]
         (87 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.5 bits (66), Expect = 0.21
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 9/45 (20%)

Query: 48  IQSHF-----IHAGLLFLVNELPSIYLQLIYQKKDLIMIYLSFLH 87
            ++ +     IHA    L  +L       + + K+LI  Y++   
Sbjct: 91  FENCYLEGNDIHA----LAAKLLQENDTTLVKTKELIKNYITARI 131



 Score = 28.4 bits (63), Expect = 0.41
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 24/54 (44%)

Query: 23  MVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNE-LPS---IYLQLI 72
           M+S       I  L        +E++Q + ++       N  LP+   + + L+
Sbjct: 338 MLS-------ISNLT-------QEQVQDY-VNK-----TNSHLPAGKQVEISLV 371


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
           termination, ATP-binding, cytoplasm, hydrolase,
           membrane; 2.80A {Schizosaccharomyces pombe}
          Length = 508

 Score = 26.2 bits (57), Expect = 1.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 27  GRVGVQIVGLPDKAVIESRERIQSHF 52
           GRVGV I  + DK   E    IQ +F
Sbjct: 458 GRVGVSINFVHDKKSWEEMNAIQEYF 483


>2wpn_B Periplasmic [nifese] hydrogenase, large subunit,
           selenocysteine-containing; metal-binding,
           oxidoreductase, oxygen tolerance; HET: FSX SBY PSW;
           2.04A {Desulfovibrio vulgaris}
          Length = 495

 Score = 24.0 bits (51), Expect = 7.9
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 46  ERIQSHFIHAGLLFLVNEL 64
             +QSH +H   L   + +
Sbjct: 113 NYLQSHILHFYHLSAQDFV 131


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.328    0.145    0.407 

Gapped
Lambda     K      H
   0.267   0.0485    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 699,418
Number of extensions: 27672
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 11
Length of query: 87
Length of database: 5,693,230
Length adjustment: 55
Effective length of query: 32
Effective length of database: 4,359,810
Effective search space: 139513920
Effective search space used: 139513920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.6 bits)