HHsearch alignment for GI: 254781029 and conserved domain: pfam01442
>pfam01442 Apolipoprotein Apolipoprotein A1/A4/E domain. These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I, Apolipoprotein A-IV, and Apolipoprotein E.
Probab=97.96 E-value=0.0023 Score=43.18 Aligned_cols=180 Identities=14% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781029|r 266 TSIAEVHESLKEELSLTSEEISVHLSRAIDSFQSIVDVRIAKVTEKTTRIVQESAQTISSKIDQLLEVLHSTSIVITKDF 345 (1828)
Q Consensus 266 ~~i~~~~e~l~~el~~~s~~i~~~~~~~~e~~~~~le~r~~~l~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~ 345 (1828)
T Consensus 8 ~e~~~y~~~l~~~l~P~t~~~~~~l~~~~~~lr~~l~~dleelr~~l~p~~~el~~~~~~~~eelr~~l~p~~~el~~~~ 87 (191)
T pfam01442 8 DELNSYAEELQEQLGPYAQEFWAQLSKETEALREELQKDLEEVRARLQPYLDELKAKVGQNLEELRQRLAPYAEELRERL 87 (191)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999770516899998888999999999985899999987899999999999899999998777899999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999----999999999999999999999999999999999999999999999
Q gi|254781029|r 346 DNRIESLSNTLNNSGRSLANQVGNYTLMLGN----NTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDV 421 (1828)
Q Consensus 346 ~~~~e~l~~~L~~~~~~l~~~~~~~~~~l~~----~~e~l~~~l~e~~~~l~e~l~~~~~e~~~~l~~~~~~l~~~l~~~ 421 (1828)
T Consensus 88 ~~~~eeLr~~l~~~~eelr~~~~~~ve~lr~~l~P~~ee~r~kl~~~leel~~~~~p~a~e~~~~l~~~~~elr~~l~~~ 167 (191)
T pfam01442 88 NRDAEELRRKLAPYAEELRDRLRQNVEALRARLGPYVEELRQKLAERLEELKESVGPYAEEYKAQLSEQVEELREKLEPY 167 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86599999999999999999999779999999773899999999999999999867668999999999999999986899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999
Q gi|254781029|r 422 LQSLRISLQEKEDSFCSNLKSTTD 445 (1828)
Q Consensus 422 ~~~l~~~l~e~~~~~~~~l~~~~~ 445 (1828)
T Consensus 168 ~e~lr~~l~p~~e~lk~~l~~~~e 191 (191)
T pfam01442 168 AEDLREKLEPYAEDLKKQLAQLLE 191 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999867669999999986529