HHsearch alignment for GI: 254781029 and conserved domain: pfam04156
>pfam04156 IncA IncA protein. Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA.
Probab=93.43 E-value=0.44 Score=24.03 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32279999999999999999999983
Q gi|254781029|r 97 LNIALRNAFMSSLIWLACELGFLIKF 122 (1828)
Q Consensus 97 s~~~~~~~~~~s~~w~~~~~~~~~~~ 122 (1828)
T Consensus 4 ~~i~~i~~iilgilLi~~gi~~l~~~ 29 (186)
T pfam04156 4 SRIISIILIILGLLLIASGIALLVLF 29 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999999999997