Query gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Match_columns 1828 No_of_seqs 3111 out of 5405 Neff 11.9 Searched_HMMs 33803 Date Thu Jun 2 00:49:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781029.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2a3n_A Putative glucosamine-f 84.0 1.3 3.8E-05 19.5 3.8 29 1758-1786 6-38 (69) 2 >3b9w_A Ammonium transporter f 77.5 2.6 7.7E-05 17.0 4.5 90 91-182 59-181 (242) 3 >2p4f_A Similar to SP|P32453 s 71.3 1.4 4.3E-05 19.1 0.9 60 1715-1777 97-157 (299) 4 >1ny9_A Transcriptional activa 70.2 3.6 0.00011 15.7 2.8 70 1719-1796 56-134 (143) 5 >2f95_B Sensory rhodopsin II t 65.3 4.6 0.00013 14.9 5.0 28 227-254 112-139 (163) 6 >3i1m_B 30S ribosomal protein 63.4 4.2 0.00013 15.2 2.0 14 76-89 156-169 (196) 7 >3jyv_B 40S ribosomal protein 60.2 3.5 0.0001 15.8 1.1 18 75-92 152-169 (193) 8 >2vha_A Periplasmic binding tr 49.4 7.9 0.00023 12.9 2.2 16 1772-1787 38-53 (62) 9 >1vf5_G Protein PET G; photosy 49.1 5.6 0.00017 14.1 0.7 11 1737-1747 23-33 (37) 10 >2jes_A Portal protein; DNA tr 48.9 8 0.00024 12.9 3.3 37 128-164 114-161 (167) 11 >1xme_C Cytochrome C oxidase p 45.5 8.9 0.00026 12.5 3.2 20 139-159 7-26 (34) 12 >1xk7_A Crotonobetainyl-COA:ca 38.8 3.1 9.2E-05 16.3 -2.0 81 81-165 139-228 (263) 13 >2h1n_A Oligoendopeptidase F; 38.2 11 0.00033 11.6 1.7 58 1736-1793 24-84 (91) 14 >2uui_A Leukotriene C4 synthas 35.4 12 0.00036 11.3 7.4 27 101-127 82-108 (156) 15 >1e68_A Bacteriocin AS-48; bac 34.4 13 0.00037 11.2 0.9 23 101-123 23-45 (70) 16 >1sg7_A Putative cation transp 34.2 13 0.00038 11.1 3.5 57 1718-1774 24-87 (96) 17 >2ywv_A Phosphoribosylaminoimi 33.7 6.7 0.0002 13.5 -0.9 19 1737-1755 14-32 (131) 18 >1rso_A SAP97, presynaptic pro 32.4 13 0.0004 10.9 3.0 19 1774-1792 24-42 (60) 19 >1rf6_A 5-enolpyruvylshikimate 29.0 15 0.00045 10.5 1.4 15 93-107 14-28 (96) 20 >1vf5_H Protein PET N; photosy 27.4 16 0.00047 10.3 3.3 17 150-166 11-27 (29) 21 >3ijm_A Uncharacterized restri 27.3 4.9 0.00014 14.7 -2.5 32 1721-1752 90-135 (151) 22 >2es4_D Lipase chaperone; prot 26.8 16 0.00048 10.2 3.0 27 1719-1745 100-134 (147) 23 >1qus_A Lytic murein transglyc 26.6 17 0.00049 10.2 3.3 18 1760-1777 33-50 (86) 24 >1or7_A Sigma-24, RNA polymera 26.5 17 0.00049 10.2 0.5 21 1731-1751 5-25 (96) 25 >1qop_B Tryptophan synthase be 26.0 17 0.0005 10.1 3.6 27 1762-1788 22-51 (101) 26 >1m7y_A ACC synthase, 1-aminoc 25.3 17 0.00051 10.0 0.4 29 1759-1787 6-36 (58) 27 >2j8s_A ACRB, acriflavine resi 24.4 18 0.00054 9.8 8.8 127 82-217 20-162 (251) 28 >1q90_R Cytochrome B6-F comple 24.2 19 0.00055 9.7 3.3 30 127-157 10-39 (49) 29 >2r6g_G Maltose transport syst 23.9 19 0.00056 9.7 2.7 16 145-160 95-110 (124) 30 >3b60_A Lipid A export ATP-bin 23.8 19 0.00057 9.6 7.9 39 82-122 10-48 (116) 31 >1z5h_A Tricorn protease inter 22.9 20 0.00061 9.4 1.6 17 1771-1787 8-24 (54) 32 >2f93_B Sensory rhodopsin II t 22.9 21 0.00061 9.4 5.4 32 146-177 70-101 (122) 33 >2q7r_A Arachidonate 5-lipoxyg 22.7 21 0.00062 9.3 5.4 25 101-125 80-104 (161) 34 >2fj6_A Hypothetical UPF0346 p 22.4 21 0.00063 9.3 1.5 14 1734-1747 58-71 (82) 35 >1x1q_A Tryptophan synthase be 22.2 22 0.00064 9.2 3.2 20 1769-1788 54-73 (134) 36 >1iay_A ACC synthase 2, 1-amin 21.9 22 0.00065 9.1 1.9 29 1759-1787 3-33 (55) 37 >3hho_A CO-chaperone protein H 21.5 23 0.00067 9.0 3.0 11 1774-1784 66-76 (85) 38 >1kf6_D Fumarate reductase 13 21.5 23 0.00067 9.0 6.5 29 94-122 7-35 (119) 39 >3g5u_A MCG1178, multidrug res 21.3 23 0.00068 9.0 10.5 21 218-238 164-184 (316) 40 >2gqc_A Rhomboid intramembrane 21.0 24 0.0007 8.9 0.1 14 1737-1750 52-65 (70) 41 >1yi8_B Tryptophanyl-tRNA synt 20.7 24 0.00071 8.8 1.6 13 1734-1746 28-40 (42) 42 >1d4d_A Flavocytochrome C fuma 20.4 25 0.00073 8.7 3.2 27 1762-1788 86-113 (148) No 1 >>2a3n_A Putative glucosamine-fructose-6-phosphate aminotransferase; 16423107, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Salmonella typhimurium LT2} (A:193-217,A:312-355) Probab=84.00 E-value=1.3 Score=19.53 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=22.7 Q ss_pred HHHHHHH----HHHHHHHHCCHHHHHHHHHHHH Q ss_conf 5259989----9999985078878997899999 Q gi|254781029|r 1758 IKGQKVF----LNLQEQYKADSALRNAIDRYIS 1786 (1828) Q Consensus 1758 ~~~~~~~----~~i~~~y~~d~~f~~~v~ry~~ 1786 (1828) ++..++| |.|+++|-.|++||..|--+|- T Consensus 6 ~~~~~~~~~~~~~~~~~~~~s~efR~~vSP~Vm 38 (69) T 2a3n_A 6 LKAKQKFDPQADAIASRYHNDDEFRWIXAPCVV 38 (69) T ss_dssp HHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 999997656678889873138443312104799 No 2 >>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transport protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* (A:39-167,A:295-407) Probab=77.49 E-value=2.6 Score=16.97 Aligned_cols=90 Identities=16% Similarity=0.074 Sum_probs=54.7 Q ss_pred HHHCCCCCHHHHHHHHHHHH-------HH-------------------------HHHHHHHHHHCCHHHHHHHHHHHHCH Q ss_conf 85418732279999999999-------99-------------------------99999999831621455576564064 Q gi|254781029|r 91 NIGKNSLNIALRNAFMSSLI-------WL-------------------------ACELGFLIKFYTNSPMDSFYDFAMRP 138 (1828) Q Consensus 91 ~l~~~~s~~~~~~~~~~s~~-------w~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1828) +.=+|-+..+|.+-+++.++ |+ ..|+++++.++++......-.+.++| T Consensus 59 AVlgR~~~~q~li~al~~v~vY~~~~~~vw~~Gwl~~lG~~DfaGs~vVH~fGgyfGLava~vLg~R~~r~GvhnlhgmP 138 (242) T 3b9w_A 59 AVLGRLRVFQYALLALFIVPVYLLNEWLVLDNASGLTEGFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAGVHNLHGLP 138 (242) T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHTTCTTSSCTTCCCTTCTTTTHHHHHHHHHHHHHHHCCHHHHTCHHHHTTHH T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHEEECCCCCCCHHHHHHH T ss_conf 74630378998999999998755222131479852113641036745541643799999987335232322740230177 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 889999999999999-99999999999999999999999999973 Q gi|254781029|r 139 EVITLFLVVSVVPIL-LFFSFFIMISRARDMHDASQSIAGIALRL 182 (1828) Q Consensus 139 ~~~~~~~~~~~~p~~-~~~~~a~~~~r~~~~~~~a~~m~~~a~rl 182 (1828) +.+|.+++++.++-- .|=+.|..+ .=-|-++.=-.|-.-+|| T Consensus 139 g~lg~~~~~~~a~~q~~~q~~~l~~--t~~~a~~~G~~tG~ilk~ 181 (242) T 3b9w_A 139 GLLGGFSAILIVPGIAVAQLTGIGI--TLALALIGGVIAGALIKL 181 (242) T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHH--HHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH T ss_conf 8999999999856899999999999--999999999999999994 No 3 >>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL315C ATP11; half barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs 138} (A:) Probab=71.31 E-value=1.4 Score=19.12 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=30.7 Q ss_pred CCCCCCHHHH-HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 7788421579-99998718013899999975074562067741252599899999985078878 Q gi|254781029|r 1715 DSLSSIDSLV-ENISKFIDYDAFVQLWKSYTLGEDDIFSKRLYTIKGQKVFLNLQEQYKADSAL 1777 (1828) Q Consensus 1715 ~~~~~l~s~s-~di~~~~~~~~~~~~w~~y~~g~~~~f~~~~~~~~~~~~~~~i~~~y~~d~~f 1777 (1828) .++.+|+|+- ++-.+-.+.+-...+|+.|..+-.++..- +.| .-.+|+.|..+-+.-|-| T Consensus 97 ~~~K~L~sil~leki~~~~~~eI~~IW~~~h~~k~~~i~A--vIp-~~~~Y~~l~~~Ak~~P~F 157 (299) T 2p4f_A 97 KPYKTLDDYLKLDKIKDLSKQEVEFLWRAKWSNRDDSLVA--VVP-YVKTFQGMYKYAVKNPLF 157 (299) T ss_dssp CSSCCHHHHSCHHHHTTSCHHHHHHHHHHHTTTCSSEEEE--EEE-TTTTHHHHHHHHHHCCEE T ss_pred CCCCCHHHHCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEE--EEC-CHHHHHHHHHHHHHCCCC T ss_conf 9987588704689864599999999999997268981699--818-899999999999859851 No 4 >>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} (A:) Probab=70.18 E-value=3.6 Score=15.72 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=44.0 Q ss_pred CCHHHHHHHHHHHCCC---------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH Q ss_conf 4215799999871801---------3899999975074562067741252599899999985078878997899999999 Q gi|254781029|r 1719 SIDSLVENISKFIDYD---------AFVQLWKSYTLGEDDIFSKRLYTIKGQKVFLNLQEQYKADSALRNAIDRYISNFE 1789 (1828) Q Consensus 1719 ~l~s~s~di~~~~~~~---------~~~~~w~~y~~g~~~~f~~~~~~~~~~~~~~~i~~~y~~d~~f~~~v~ry~~~fe 1789 (1828) --+.+-.+++.+|+.. ..++.|..|.. +-.+.-....|.-|.+-|..||.|+...|+|=..+- T Consensus 56 ~~~~i~~~l~~~~~~g~~p~s~~vq~l~~~h~~~l~--------~~~~~~s~e~~~~L~~mYv~D~rF~~~~d~~~~gla 127 (143) T 1ny9_A 56 EADELTRRFVALMDAGEPADSEGAMDAAEDHRQGIA--------RNHYDCGYEMHTCLGEMYVSDERFTRNIDAAKPGLA 127 (143) T ss_dssp HHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHH--------HHSSCCCHHHHHHHHHHTTSTHHHHHHHGGGSTTHH T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH--------HHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCHHH T ss_conf 999999999999975989998999999999999998--------674799999999999986689078886224582199 Q ss_pred HHHHHHH Q ss_conf 9999998 Q gi|254781029|r 1790 EMLSEIA 1796 (1828) Q Consensus 1790 ~~l~~~~ 1796 (1828) ..|+++. T Consensus 128 ~fl~~Ai 134 (143) T 1ny9_A 128 AYMRDAI 134 (143) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 5 >>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle state; HET: BOG RET; 2.20A {Natronomonas pharaonis} (B:) Probab=65.26 E-value=4.6 Score=14.90 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999 Q gi|254781029|r 227 SEIEVLENNYTKSEMRIDNITQNLKQER 254 (1828) Q Consensus 227 ~ev~~ler~y~dnE~rir~L~~el~~er 254 (1828) .|+..|-++++..-.+++..++++.... T Consensus 112 dEig~L~~~~n~m~~~l~~~~~~~~~~~ 139 (163) T 2f95_B 112 DEIGDLYAAFDEMRQSVRTSLEDAKNAR 139 (163) T ss_dssp ---------------------------- T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6799999999999999999999999999 No 6 >>3i1m_B 30S ribosomal protein S2; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 2qal_B* 1p87_B 2aw7_B 2avy_B 2i2u_B 2i2p_B* 2qan_B* 2qb9_B* 2qbb_B* 2qbd_B 2qbf_B ... (B:46-241) Probab=63.38 E-value=4.2 Score=15.17 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=5.2 Q ss_pred CCCCCCCCCHHHHH Q ss_conf 87755677989899 Q gi|254781029|r 76 PANDLDNGGITHIL 89 (1828) Q Consensus 76 pa~~d~r~~~~~~~ 89 (1828) |+|||.+++|.-++ T Consensus 156 P~Ndds~~si~li~ 169 (196) T 3i1m_B 156 PGNDDAIRAVTLYL 169 (196) T ss_dssp CSCSSSSSTTHHHH T ss_pred ECCCCHHHHHHHHH T ss_conf 68887499999999 No 7 >>3jyv_B 40S ribosomal protein S0(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_B (B:) Probab=60.25 E-value=3.5 Score=15.83 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=10.8 Q ss_pred CCCCCCCCCCHHHHHHHH Q ss_conf 887755677989899985 Q gi|254781029|r 75 YPANDLDNGGITHILQNI 92 (1828) Q Consensus 75 ~pa~~d~r~~~~~~~~~l 92 (1828) -|+|||++++++-++..| T Consensus 152 IP~Nd~s~~si~li~~~l 169 (193) T 3jyv_B 152 IPCNNRGKHSIGLIWYLL 169 (193) T ss_dssp EESCSSCTTHHHHHHHHH T ss_pred EECCCCHHHHHHHHHHHH T ss_conf 607885487999999999 No 8 >>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.0A {Shigella flexneri} PDB: 2ia4_A* (A:73-105,A:213-241) Probab=49.36 E-value=7.9 Score=12.91 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=11.8 Q ss_pred HCCHHHHHHHHHHHHH Q ss_conf 0788789978999999 Q gi|254781029|r 1772 KADSALRNAIDRYISN 1787 (1828) Q Consensus 1772 ~~d~~f~~~v~ry~~~ 1787 (1828) ..||+||.-||+-|.. T Consensus 38 k~dp~fk~lvd~~~~~ 53 (62) T 2vha_A 38 KDDPQFKKLMDDTIAQ 53 (62) T ss_dssp TTCHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHH T ss_conf 8999999999999999 No 9 >>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} (G:) Probab=49.06 E-value=5.6 Score=14.15 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=4.0 Q ss_pred HHHHHHHHHCC Q ss_conf 99999975074 Q gi|254781029|r 1737 VQLWKSYTLGE 1747 (1828) Q Consensus 1737 ~~~w~~y~~g~ 1747 (1828) +.+|--|+||+ T Consensus 23 v~AylQyrRg~ 33 (37) T 1vf5_G 23 YAAYQQYKRPN 33 (37) T ss_dssp HHHHHHTCC-- T ss_pred HHHHHHHHHCC T ss_conf 99999983035 No 10 >>2jes_A Portal protein; DNA translocation, molecular motor, viral portal protein, viral protein; 3.4A {Bacteriophage SPP1} (A:141-255,A:353-404) Probab=48.95 E-value=8 Score=12.86 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=20.9 Q ss_pred HHHHHHHHHCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH Q ss_conf 55576564064889999999-----------99999999999999999 Q gi|254781029|r 128 MDSFYDFAMRPEVITLFLVV-----------SVVPILLFFSFFIMISR 164 (1828) Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~-----------~~~p~~~~~~~a~~~~r 164 (1828) ++.+++.++.|++--+++.. -.+--+|||+||-..+- T Consensus 114 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (167) T 2jes_A 114 VSTIGGGATGPALEKLYALLDLKANMAERKIRAGLRLFFWFFAEYLRN 161 (167) T ss_dssp CCSSTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 652367765999999874599999999999999999999999999985 No 11 >>1xme_C Cytochrome C oxidase polypeptide IIA; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} (C:) Probab=45.47 E-value=8.9 Score=12.46 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=10.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 889999999999999999999 Q gi|254781029|r 139 EVITLFLVVSVVPILLFFSFF 159 (1828) Q Consensus 139 ~~~~~~~~~~~~p~~~~~~~a 159 (1828) +.+|+++... +.|+.||+-. T Consensus 7 gal~vi~il~-l~ilvfw~gv 26 (34) T 1xme_C 7 GALAVILVLT-LTILVFWLGV 26 (34) T ss_dssp HHHHHHHHHH-HHHHHHHHHH T ss_pred CHHHHHHHHH-HHHHHHHHHH T ss_conf 1579999999-9999999999 No 12 >>1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 1.60A {Escherichia coli} (A:1-224,A:370-408) Probab=38.79 E-value=3.1 Score=16.30 Aligned_cols=81 Identities=11% Similarity=-0.091 Sum_probs=43.4 Q ss_pred CCCCHHHHHHHHH---------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHH Q ss_conf 6779898999854---------1873227999999999999999999998316214555765640648899999999999 Q gi|254781029|r 81 DNGGITHILQNIG---------KNSLNIALRNAFMSSLIWLACELGFLIKFYTNSPMDSFYDFAMRPEVITLFLVVSVVP 151 (1828) Q Consensus 81 ~r~~~~~~~~~l~---------~~~s~~~~~~~~~~s~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 151 (1828) +|.....+.+++. .+|.+.+++++-.+++++++.|+..+...-.....+...+++..-..+. ..--+ T Consensus 139 ~rpg~D~~~qA~sG~~~~~G~~d~P~~~~~~~~D~~~G~~aa~giLaAL~~R~~tG~G~~VdvSl~e~~~~----~~~~~ 214 (263) T 1xk7_A 139 NLPAYNTIAQAFSGYLIQNGDVDQPXPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAXYEVXLR----XGQYF 214 (263) T ss_dssp TSCCCHHHHHHHHTSGGGSEETTEECCCTTTHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH----HTHHH T ss_pred CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH----HHHHC T ss_conf 54431302201101000024553222222222312320544245688764235678867645332221134----42100 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254781029|r 152 ILLFFSFFIMISRA 165 (1828) Q Consensus 152 ~~~~~~~a~~~~r~ 165 (1828) +..++.....|||+ T Consensus 215 ~~~y~~~G~~~~~~ 228 (263) T 1xk7_A 215 XXDYFNGGEXIWRG 228 (263) T ss_dssp HHHHHTTSCCCCCC T ss_pred CHHHHCCCCCCCCC T ss_conf 01010122338899 No 13 >>2h1n_A Oligoendopeptidase F; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG, PSI; 3.00A {Geobacillus stearothermophilus} PDB: 2h1j_A (A:477-567) Probab=38.25 E-value=11 Score=11.63 Aligned_cols=58 Identities=19% Similarity=0.340 Sum_probs=23.6 Q ss_pred HHHHHHHHHHCCCCCHH--HHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHH Q ss_conf 89999997507456206--7741252599899999985078878-9978999999999999 Q gi|254781029|r 1736 FVQLWKSYTLGEDDIFS--KRLYTIKGQKVFLNLQEQYKADSAL-RNAIDRYISNFEEMLS 1793 (1828) Q Consensus 1736 ~~~~w~~y~~g~~~~f~--~~~~~~~~~~~~~~i~~~y~~d~~f-~~~v~ry~~~fe~~l~ 1793 (1828) +..+|.+|+++-.+... ..+-+.-|-..+.|+.++-.-|-.| ...+..=|..|+..|+ T Consensus 24 al~l~~~~~~~~~~~~~~Y~~~L~~ggs~~~~e~~k~~Gid~~~~~~~~~~~~~~i~~~i~ 84 (91) T 2h1n_A 24 AFQFWKRAQEDRASAWRDYVALCRLGGSRPFTELVKSANLQSPFADGAVASVVGHIERWLD 84 (91) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHTTCCCTTSTTHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 9999999997789999999999628699989999988699999989999999999999999 No 14 >>2uui_A Leukotriene C4 synthase; leukotriene signalling, leukotriene biosynthesis, membrane, eicosanoid, transmembrane, membrane protein, APO, lyase, mapeg; HET: LMT PLM; 2.0A {Homo sapiens} (A:) Probab=35.36 E-value=12 Score=11.29 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 999999999999999999998316214 Q gi|254781029|r 101 LRNAFMSSLIWLACELGFLIKFYTNSP 127 (1828) Q Consensus 101 ~~~~~~~s~~w~~~~~~~~~~~~~~~~ 127 (1828) =++++++.++|+.|=+..++++..+.+ T Consensus 82 ~~~~~~lg~v~~vgR~lh~~gY~~~~~ 108 (156) T 2uui_A 82 EGAAALCGLVYLFARLRYFQGYARSAQ 108 (156) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGG T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 899999999999999999989855866 No 15 >>1e68_A Bacteriocin AS-48; bacteriocins, cationic antibacterial peptides, solution structure, five-helixglobule, cyclic polypeptide; NMR {Enterococcus faecalis} (A:) Probab=34.44 E-value=13 Score=11.18 Aligned_cols=23 Identities=9% Similarity=-0.122 Sum_probs=14.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999999999999999831 Q gi|254781029|r 101 LRNAFMSSLIWLACELGFLIKFY 123 (1828) Q Consensus 101 ~~~~~~~s~~w~~~~~~~~~~~~ 123 (1828) -|++||+|++-+.|..|++.+.. T Consensus 23 g~vttivsil~avgsgglsllaa 45 (70) T 1e68_A 23 GWVTTIVSILTAVGSGGLSLLAA 45 (70) T ss_dssp CCHHHHHHHHHTTSHHHHHHHHH T ss_pred CCHHHHHHHHHHHCCCCHHHHHH T ss_conf 50335999999973662899998 No 16 >>1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} (A:) Probab=34.16 E-value=13 Score=11.15 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=33.4 Q ss_pred CCCHHHHHHHHHHHCC-------CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 8421579999987180-------13899999975074562067741252599899999985078 Q gi|254781029|r 1718 SSIDSLVENISKFIDY-------DAFVQLWKSYTLGEDDIFSKRLYTIKGQKVFLNLQEQYKAD 1774 (1828) Q Consensus 1718 ~~l~s~s~di~~~~~~-------~~~~~~w~~y~~g~~~~f~~~~~~~~~~~~~~~i~~~y~~d 1774 (1828) ++.+-|...|.+-|.. .++..+|+.|.-|+...=...--...-+-++..|+++|..+ T Consensus 24 ~s~~dLP~sVr~~LP~~AQrif~kafNsA~e~Y~d~~~r~~~~~~Ee~A~kvAW~AVK~~Y~K~ 87 (96) T 1sg7_A 24 KTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAVKHEYAKG 87 (96) T ss_dssp SSSTTSCHHHHTTCCSHHHHHHHHHHHHHHHHCCSSSSSSCHHHHHHHHHHHHHHHHHHHEEEC T ss_pred CCHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHEEEC T ss_conf 7834577999986889999999999999999844776421321368899999999998652578 No 17 >>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide synthetase; ADP complex, structural genomics, NPPSFA; HET: ADP; 1.75A {Geobacillus kaustophilus} (A:89-219) Probab=33.69 E-value=6.7 Score=13.52 Aligned_cols=19 Identities=26% Similarity=0.137 Sum_probs=7.4 Q ss_pred HHHHHHHHHCCCCCHHHHH Q ss_conf 9999997507456206774 Q gi|254781029|r 1737 VQLWKSYTLGEDDIFSKRL 1755 (1828) Q Consensus 1737 ~~~w~~y~~g~~~~f~~~~ 1755 (1828) ..+|+||..|++..|..-+ T Consensus 14 GS~~rry~~~eg~~~~~Pi 32 (131) T 2ywv_A 14 GSLAKRIGLEEGTPLEAPL 32 (131) T ss_dssp HHHHHHHTCCTTEEEEEEE T ss_pred CCCCCCCCCCCCCCCCCCC T ss_conf 3641037887886789875 No 18 >>1rso_A SAP97, presynaptic protein SAP97; L27 domain, scaffold protein, protein assembly, cell polarity; NMR {Rattus norvegicus} (A:) Probab=32.42 E-value=13 Score=10.93 Aligned_cols=19 Identities=47% Similarity=0.691 Sum_probs=11.9 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 8878997899999999999 Q gi|254781029|r 1774 DSALRNAIDRYISNFEEML 1792 (1828) Q Consensus 1774 d~~f~~~v~ry~~~fe~~l 1792 (1828) |..||.+++|-|.-|..=| T Consensus 24 D~~Lr~aiervI~iFkS~L 42 (60) T 1rso_A 24 DRQLRSSIERVISIFQSNL 42 (60) T ss_dssp CHHHHHHHHHHHHHHHCHH T ss_pred CHHHHHHHHHHHHHHHHHH T ss_conf 3999999999999999999 No 19 >>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} (A:1-17,A:234-296,A:412-427) Probab=28.98 E-value=15 Score=10.50 Aligned_cols=15 Identities=7% Similarity=-0.299 Sum_probs=10.0 Q ss_pred HCCCCCHHHHHHHHH Q ss_conf 418732279999999 Q gi|254781029|r 93 GKNSLNIALRNAFMS 107 (1828) Q Consensus 93 ~~~~s~~~~~~~~~~ 107 (1828) -+-||++.||+|+++ T Consensus 14 ~~~~SSAafflaAa~ 28 (96) T 1rf6_A 14 IRVPSSAAFWLVAGL 28 (96) T ss_dssp ECCCHHHHHHHHHHH T ss_pred EECCHHHHHHHHHHH T ss_conf 983788999999999 No 20 >>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} (H:) Probab=27.36 E-value=16 Score=10.29 Aligned_cols=17 Identities=6% Similarity=0.223 Sum_probs=13.9 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999 Q gi|254781029|r 150 VPILLFFSFFIMISRAR 166 (1828) Q Consensus 150 ~p~~~~~~~a~~~~r~~ 166 (1828) +-|+|.|..||.+|--+ T Consensus 11 llvvftwsiamvvwgrn 27 (29) T 1vf5_H 11 LLVVFTWSIAMVVWGRN 27 (29) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred HHHHHHHEEEEEEECCC T ss_conf 88876312356887167 No 21 >>3ijm_A Uncharacterized restriction endonuclease-like fold superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily; 1.70A {Spirosoma linguale dsm 74} (A:) Probab=27.30 E-value=4.9 Score=14.66 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=19.0 Q ss_pred HHHHHH---HHHHHCCCH-----------HHHHHHHHHHCCCCCHH Q ss_conf 157999---998718013-----------89999997507456206 Q gi|254781029|r 1721 DSLVEN---ISKFIDYDA-----------FVQLWKSYTLGEDDIFS 1752 (1828) Q Consensus 1721 ~s~s~d---i~~~~~~~~-----------~~~~w~~y~~g~~~~f~ 1752 (1828) +-|--| |-++||-.. -..-|-|||.||.|+-| T Consensus 90 ~GlK~Dl~Kvi~LIeD~~YgIlEGFvynYkt~~W~rYR~Gd~G~at 135 (151) T 3ijm_A 90 SGLKHDTSKIVKLIEDNAYGILEGFVFNYKTQQWLRYRLGDGGVAT 135 (151) T ss_dssp GGHHHHHHHHHHHHHSSCSCCCEEEEEETTTTEEEEEETTSTTCCB T ss_pred CCCCCCHHHHHHHHHCCCCCHHEEEEEECCCCEEEEEECCCCCCCC T ss_conf 5763318888877615762211001343024405788617996122 No 22 >>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} (D:1-147) Probab=26.79 E-value=16 Score=10.21 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=15.2 Q ss_pred CCHHHHHHHHHHH----CCCH----HHHHHHHHHH Q ss_conf 4215799999871----8013----8999999750 Q gi|254781029|r 1719 SIDSLVENISKFI----DYDA----FVQLWKSYTL 1745 (1828) Q Consensus 1719 ~l~s~s~di~~~~----~~~~----~~~~w~~y~~ 1745 (1828) +++-+-.+|.+-| +... +.++|+||+. T Consensus 100 ~l~~i~~~v~~~i~~ql~~~pA~~qa~~L~~rYla 134 (147) T 2es4_D 100 TPAALDALVRREIAAQLDGSPAQAEALGVWRRYRA 134 (147) T ss_dssp CHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 78999999999999860698788888899999999 No 23 >>1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN five-stranded antiparallel beta-sheet, hydrolase; HET: BCN; 1.70A {Escherichia coli} (A:66-129,A:301-322) Probab=26.56 E-value=17 Score=10.18 Aligned_cols=18 Identities=6% Similarity=0.062 Sum_probs=8.0 Q ss_pred HHHHHHHHHHHHHCCHHH Q ss_conf 599899999985078878 Q gi|254781029|r 1760 GQKVFLNLQEQYKADSAL 1777 (1828) Q Consensus 1760 ~~~~~~~i~~~y~~d~~f 1777 (1828) -+..|+.|.++|.-||+| T Consensus 33 ~~~~L~~ie~~YGVp~~i 50 (86) T 1qus_A 33 YEDALNRAWQVYGVPPEI 50 (86) T ss_dssp THHHHHHHHHHHCCCHHH T ss_pred HHHHHHHHHHHHCCCHHH T ss_conf 999999999997929888 No 24 >>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} (A:1-96) Probab=26.51 E-value=17 Score=10.18 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=8.9 Q ss_pred HCCCHHHHHHHHHHHCCCCCH Q ss_conf 180138999999750745620 Q gi|254781029|r 1731 IDYDAFVQLWKSYTLGEDDIF 1751 (1828) Q Consensus 1731 ~~~~~~~~~w~~y~~g~~~~f 1751 (1828) +++....+++.+++.||...| T Consensus 5 ~~~~~~~~Li~~~~~gd~~a~ 25 (96) T 1or7_A 5 SEQLTDQVLVERVQKGDQKAF 25 (96) T ss_dssp HHHHHHHHHHHHHHTTCHHHH T ss_pred CCCCCHHHHHHHHHCCCHHHH T ss_conf 743559999999980889999 No 25 >>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} (B:1-52,B:271-319) Probab=26.00 E-value=17 Score=10.11 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=15.9 Q ss_pred HHHHHHHH---HHHCCHHHHHHHHHHHHHH Q ss_conf 98999999---8507887899789999999 Q gi|254781029|r 1762 KVFLNLQE---QYKADSALRNAIDRYISNF 1788 (1828) Q Consensus 1762 ~~~~~i~~---~y~~d~~f~~~v~ry~~~f 1788 (1828) .+++||.+ ++..||+|+.--++|..+| T Consensus 22 ~aL~ELe~ay~~~~~Dp~F~~El~~ll~~Y 51 (101) T 1qop_B 22 PALNQLEEAFVSAQKDPEFQAQFADLLKNY 51 (101) T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHC T ss_conf 999999999999972989999999998624 No 26 >>1m7y_A ACC synthase, 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, pyridoxal phosphate, lyase; HET: PPG; 1.60A {Malus x domestica} (A:66-108,A:304-318) Probab=25.30 E-value=17 Score=10.01 Aligned_cols=29 Identities=21% Similarity=0.523 Sum_probs=21.0 Q ss_pred HHHHHHHHHHH--HHHCCHHHHHHHHHHHHH Q ss_conf 25998999999--850788789978999999 Q gi|254781029|r 1759 KGQKVFLNLQE--QYKADSALRNAIDRYISN 1787 (1828) Q Consensus 1759 ~~~~~~~~i~~--~y~~d~~f~~~v~ry~~~ 1787 (1828) -|...|++|+- -|-.=|+||.+|-+|+.. T Consensus 6 eG~~~Fr~iAlFQDYHGLp~FR~AiA~FM~k 36 (58) T 1m7y_A 6 NGESIFAELALFQDYHGLPAFKKAMVDFMAE 36 (58) T ss_dssp TTEECHHHHHHCCCTTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH T ss_conf 4555308861794981629999999999999 No 27 >>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... (A:505-567,A:868-1055) Probab=24.42 E-value=18 Score=9.80 Aligned_cols=127 Identities=9% Similarity=-0.049 Sum_probs=63.9 Q ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHH-----H----------HHHCHHHHHHHH Q ss_conf 779898999854187322799999999999999999999831621-455576-----5----------640648899999 Q gi|254781029|r 82 NGGITHILQNIGKNSLNIALRNAFMSSLIWLACELGFLIKFYTNS-PMDSFY-----D----------FAMRPEVITLFL 145 (1828) Q Consensus 82 r~~~~~~~~~l~~~~s~~~~~~~~~~s~~w~~~~~~~~~~~~~~~-~~~~~~-----~----------~~~~~~~~~~~~ 145 (1828) ++.++..+..+=+|+-..-..++..+.+.|. +-.-+-.+++|.. ...+.. . ++.++-. ++ . T Consensus 20 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~f~p~~~s~~~~~~~~~iaivlv~ivl~i~~rs~~~-~l-i 96 (251) T 2j8s_A 20 THHYTDSVGGILRSTGRYLVLYLIIVVGMAY-LFVRLPSSFLPDELSGNQAPSLYAISLIVVFLCLAALYESWSI-PF-S 96 (251) T ss_dssp HHHHHHHHHHHHSSSSTHHHHHHHHHHHHHH-HHHHSCBCSSCCCSSSCCCTHHHHHHHHHHHHHHHHHTTCSST-HH-H T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H T ss_conf 3334667642100113331011122211112-2220010137640999899999999999999999999863999-99-9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999997309255569999999999999999723689999999 Q gi|254781029|r 146 VVSVVPILLFFSFFIMISRARDMHDASQSIAGIALRLIDPEEYSSEKMQSISSAVRKEIVLMTEEIDRAISR 217 (1828) Q Consensus 146 ~~~~~p~~~~~~~a~~~~r~~~~~~~a~~m~~~a~rl~~p~~~a~~~~~~~~qa~r~ev~a~~~~~er~~~r 217 (1828) ..+.+|+.+++.++.|.+-+-++-..+-..-=+++ .++.|-..-+-+.+|++...-|.....|+-+ T Consensus 97 ~l~~v~~~i~~~~~~l~l~g~~l~~~s~~~lilli------Gi~vd~aI~iv~~~~e~~~~~g~~~~~A~~~ 162 (251) T 2j8s_A 97 VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI------GLSAKNAILIVEFAKDLMDKEGKGLIEATLD 162 (251) T ss_dssp HHTTHHHHHHHHHHHHHHHTCCBSHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHSCBHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------HHHHHCCCHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99999999999999999977875799999999999------9998381057999999999769999999999 No 28 >>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} (R:) Probab=24.23 E-value=19 Score=9.75 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=15.8 Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH Q ss_conf 4555765640648899999999999999999 Q gi|254781029|r 127 PMDSFYDFAMRPEVITLFLVVSVVPILLFFS 157 (1828) Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 157 (1828) ..+.+-.+++.- .+++.+++.+.|++.||+ T Consensus 10 ~rRqlmNlL~~g-~v~~~~~g~l~p~~~fFv 39 (49) T 1q90_R 10 NKRNIMNLILAG-GAGLPITTLALGYGAFFV 39 (49) T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHH-HHHHHHHHHEEEEEEEEC T ss_conf 499999999984-001300101110068861 No 29 >>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (G:1-72,G:245-296) Probab=23.89 E-value=19 Score=9.66 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999999 Q gi|254781029|r 145 LVVSVVPILLFFSFFI 160 (1828) Q Consensus 145 ~~~~~~p~~~~~~~a~ 160 (1828) +..+++|++++|+++. T Consensus 95 avL~~iPiiivfl~~Q 110 (124) T 2r6g_G 95 AVMSALPITIVFLLAQ 110 (124) T ss_dssp HHHTHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999999 No 30 >>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} (A:1-116) Probab=23.80 E-value=19 Score=9.63 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=23.1 Q ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 77989899985418732279999999999999999999983 Q gi|254781029|r 82 NGGITHILQNIGKNSLNIALRNAFMSSLIWLACELGFLIKF 122 (1828) Q Consensus 82 r~~~~~~~~~l~~~~s~~~~~~~~~~s~~w~~~~~~~~~~~ 122 (1828) .+++..+++- -+|-+..++++.++++++.+..+...+.. T Consensus 10 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 48 (116) T 3b60_A 10 WQTFRRLWPT--IAPFKAGLIVAGIALILNAASDTFMLSLL 48 (116) T ss_dssp CHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999--99999999999999999999999999999 No 31 >>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A (A:273-281,A:366-410) Probab=22.89 E-value=20 Score=9.39 Aligned_cols=17 Identities=18% Similarity=0.538 Sum_probs=9.5 Q ss_pred HHCCHHHHHHHHHHHHH Q ss_conf 50788789978999999 Q gi|254781029|r 1771 YKADSALRNAIDRYISN 1787 (1828) Q Consensus 1771 y~~d~~f~~~v~ry~~~ 1787 (1828) +-.|..|+..+.+|+.. T Consensus 8 ~~Gee~F~~gl~~Yl~k 24 (54) T 1z5h_A 8 WWGYEEFRKGISKYLND 24 (54) T ss_dssp SGCHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHC T ss_conf 33513678898876541 No 32 >>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle state, membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} (B:) Probab=22.88 E-value=21 Score=9.39 Aligned_cols=32 Identities=0% Similarity=-0.196 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999 Q gi|254781029|r 146 VVSVVPILLFFSFFIMISRARDMHDASQSIAG 177 (1828) Q Consensus 146 ~~~~~p~~~~~~~a~~~~r~~~~~~~a~~m~~ 177 (1828) +.++.=++.||+.-.+++.=.+|...++.|++ T Consensus 70 ~~~~~~~~~~~~~~~i~~PI~~l~~~~~~i~~ 101 (122) T 2f93_B 70 LGINLGLVAATLGGDTAASLSTLAAKASRMGD 101 (122) T ss_dssp HHHHHHHHC----------------------- T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC T ss_conf 99999898732032045899999999999867 No 33 >>2q7r_A Arachidonate 5-lipoxygenase-activating protein; flap, mapeg, membrane protein, lipid transport; HET: 3CS; 4.00A {Homo sapiens} (A:) Probab=22.68 E-value=21 Score=9.34 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=17.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 9999999999999999999983162 Q gi|254781029|r 101 LRNAFMSSLIWLACELGFLIKFYTN 125 (1828) Q Consensus 101 ~~~~~~~s~~w~~~~~~~~~~~~~~ 125 (1828) =+++.+.-++|+.|=+..++++..+ T Consensus 80 p~~a~~lg~~~~vgR~lH~~gy~~~ 104 (161) T 2q7r_A 80 QVPAAFAGLXYLFVRQKYFVGYLGE 104 (161) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 8999999979999999999998378 No 34 >>2fj6_A Hypothetical UPF0346 protein YOZE; SR391, structure, autostructure, northeast structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} (A:) Probab=22.41 E-value=21 Score=9.27 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=8.2 Q ss_pred CHHHHHHHHHHHCC Q ss_conf 13899999975074 Q gi|254781029|r 1734 DAFVQLWKSYTLGE 1747 (1828) Q Consensus 1734 ~~~~~~w~~y~~g~ 1747 (1828) .+++++|+.|.--. T Consensus 58 ~iFD~aWe~Yl~~~ 71 (82) T 2fj6_A 58 ATFDEAWDQYESEV 71 (82) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999998 No 35 >>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus HB8} (A:1-75,A:286-344) Probab=22.17 E-value=22 Score=9.20 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=9.4 Q ss_pred HHHHCCHHHHHHHHHHHHHH Q ss_conf 98507887899789999999 Q gi|254781029|r 1769 EQYKADSALRNAIDRYISNF 1788 (1828) Q Consensus 1769 ~~y~~d~~f~~~v~ry~~~f 1788 (1828) +++..||+|+.--++|..+| T Consensus 54 ~~~~~Dp~F~~El~~ll~~Y 73 (134) T 1x1q_A 54 REAKKDPAFLEELDHYLRQF 73 (134) T ss_dssp HHHHHCHHHHHHHHHHHHHT T ss_pred HHHHCCHHHHHHHHHHHHHC T ss_conf 99966999999999998744 No 36 >>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, lyase; HET: PLP AVG; 2.70A {Solanum lycopersicum} (A:66-105,A:299-313) Probab=21.92 E-value=22 Score=9.13 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=21.6 Q ss_pred HHHHHHHHHHH--HHHCCHHHHHHHHHHHHH Q ss_conf 25998999999--850788789978999999 Q gi|254781029|r 1759 KGQKVFLNLQE--QYKADSALRNAIDRYISN 1787 (1828) Q Consensus 1759 ~~~~~~~~i~~--~y~~d~~f~~~v~ry~~~ 1787 (1828) .|...|++|+- -|-.=|+||.+|-+|+.. T Consensus 3 eG~~~FrdiAlFQDYHGLpeFR~AvA~FM~k 33 (55) T 1iay_A 3 EGIKSFKAIANFQDYHGLPEFRKAIAKFMEK 33 (55) T ss_dssp ----CHHHHHHCCCTTCCHHHHHHHHHHHHH T ss_pred HHHHCCHHHCCCCCCCCCHHHHHHHHHHHHH T ss_conf 7541783425899983709999999999999 No 37 >>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae} (A:1-85) Probab=21.50 E-value=23 Score=9.02 Aligned_cols=11 Identities=18% Similarity=-0.079 Sum_probs=3.8 Q ss_pred CHHHHHHHHHH Q ss_conf 88789978999 Q gi|254781029|r 1774 DSALRNAIDRY 1784 (1828) Q Consensus 1774 d~~f~~~v~ry 1784 (1828) ||.-|..=|+| T Consensus 66 dp~~R~~YD~~ 76 (85) T 3hho_A 66 DPLRRAEYLLS 76 (85) T ss_dssp SHHHHHHHHHH T ss_pred CHHHHHHHHHH T ss_conf 88887888998 No 38 >>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} (D:) Probab=21.50 E-value=23 Score=9.01 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=16.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 18732279999999999999999999983 Q gi|254781029|r 94 KNSLNIALRNAFMSSLIWLACELGFLIKF 122 (1828) Q Consensus 94 ~~~s~~~~~~~~~~s~~w~~~~~~~~~~~ 122 (1828) +||---+||.=+-+-+-|.+.-.-..... T Consensus 7 KRS~EPi~WgLFgAGGm~~Al~~Pv~Ili 35 (119) T 1kf6_D 7 KRSDEPVFWGLFGAGGMWSAIIAPVMILL 35 (119) T ss_dssp CCCSHHHHHHHHHHHHHHHHHTHHHHHHH T ss_pred CCCCCCCHHEEECCCCHHHHHHHHHHHHH T ss_conf 87789851212446602799998899999 No 39 >>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* (A:1-206,A:854-963) Probab=21.33 E-value=23 Score=8.97 Aligned_cols=21 Identities=10% Similarity=0.303 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999 Q gi|254781029|r 218 ASELEKTVRSEIEVLENNYTK 238 (1828) Q Consensus 218 a~ele~lv~~ev~~ler~y~d 238 (1828) .|+|=+.+-++|..++.-+.. T Consensus 164 ~G~l~~r~~~d~~~i~~~~~~ 184 (316) T 3g5u_A 164 VGELNTRLTDDVSKINEGIGD 184 (316) T ss_dssp SHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 899999999999999999999 No 40 >>2gqc_A Rhomboid intramembrane protease; alpha-beta domain, hydrolase; NMR {Pseudomonas aeruginosa PAO1} (A:) Probab=20.97 E-value=24 Score=8.87 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=7.7 Q ss_pred HHHHHHHHHCCCCC Q ss_conf 99999975074562 Q gi|254781029|r 1737 VQLWKSYTLGEDDI 1750 (1828) Q Consensus 1737 ~~~w~~y~~g~~~~ 1750 (1828) -++..||++||.++ T Consensus 52 ~~ly~r~~~Gd~~~ 65 (70) T 2gqc_A 52 RELYRRYPEGDPQA 65 (70) T ss_dssp HHHHTTSSSTTTTS T ss_pred HHHHHHHHCCCCCC T ss_conf 99999857789664 No 41 >>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans R1} PDB: 1yia_B* 1yid_B* 2a4m_A* (B:245-286) Probab=20.71 E-value=24 Score=8.79 Aligned_cols=13 Identities=23% Similarity=0.302 Sum_probs=7.2 Q ss_pred CHHHHHHHHHHHC Q ss_conf 1389999997507 Q gi|254781029|r 1734 DAFVQLWKSYTLG 1746 (1828) Q Consensus 1734 ~~~~~~w~~y~~g 1746 (1828) +-..+|=++|+|| T Consensus 28 ~~v~elK~~Yr~G 40 (42) T 1yi8_B 28 ARVQALKDQYRAG 40 (42) T ss_dssp HHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHC T ss_conf 5799999999868 No 42 >>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} (A:360-507) Probab=20.37 E-value=25 Score=8.70 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHCCH-HHHHHHHHHHHHH Q ss_conf 98999999850788-7899789999999 Q gi|254781029|r 1762 KVFLNLQEQYKADS-ALRNAIDRYISNF 1788 (1828) Q Consensus 1762 ~~~~~i~~~y~~d~-~f~~~v~ry~~~f 1788 (1828) .++++.+.++.-|+ .++.+|++|-+-+ T Consensus 86 ~tl~eLa~~~Gid~~~l~~tV~~yN~~~ 113 (148) T 1d4d_A 86 KTIEELAKQIDVPAAELAKTVTAYNGFV 113 (148) T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHHHHHC T ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 8899999873999999999999999999 Done!