HHsearch results for GI: 254781029 and protein with PDBid: 1gs9_A
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=94.50 E-value=0.18 Score=25.54 Aligned_cols=134 Identities=10% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781029|r 361 RSLANQVGNYTLMLGNNTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDVLQSLRISLQEKEDSFCSNL 440 (1828)
Q Consensus 361 ~~l~~~~~~~~~~l~~~~e~l~~~l~e~~~~l~e~l~~~~~e~~~~l~~~~~~l~~~l~~~~~~l~~~l~e~~~~~~~~l 440 (1828)
+.+.+.|-.....+....+.....+ +...+.+.+...+.+..+.+......+...+......+...+......++..+
T Consensus 27 e~~~~~f~~y~~~v~~~a~~~~e~l--~~se~~~el~~~l~e~~~~l~~~~~~l~~~l~p~aee~~~~l~~~~e~lr~~l 104 (165)
T 1gs9_A 27 ELALGRFWDYLRWVQTLSEQVQEEL--LSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARL 104 (165)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHH--HSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999779999999998799999999--98899999999999999999999999999877679999999889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999
Q gi|254781029|r 441 KSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSITDFSSFYKDNLSEFESNLQ 496 (1828)
Q Consensus 441 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~el~~~l~ 496 (1828)
....+.....+......+...+.....++...+.....++...+...+.++..++.
T Consensus 105 ~~~~eelr~kl~~~~eEl~~~l~~~~ee~r~~l~p~~eelr~~l~~~~eelr~kL~ 160 (165)
T 1gs9_A 105 GADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87899999999988999999999999999998799999999999999999999876