Query gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 1828
No_of_seqs 3111 out of 5405
Neff 11.9
Searched_HMMs 23785
Date Wed Jun 1 07:18:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781029.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a01_A Apolipoprotein A-I; fou 97.4 0.00078 3.3E-08 45.4 8.7 231 323-553 11-243 (243)
2 1nfn_A Apolipoprotein E3; lipi 96.7 0.031 1.3E-06 31.9 11.9 163 342-504 26-190 (191)
3 1gs9_A Apolipoprotein E, APOE4 94.5 0.18 7.4E-06 25.5 9.3 134 361-496 27-160 (165)
4 2f95_B Sensory rhodopsin II tr 89.3 0.54 2.3E-05 21.4 5.0 30 226-255 111-140 (163)
5 2uui_A Leukotriene C4 synthase 78.5 1.7 7.2E-05 17.2 8.2 63 99-163 81-143 (156)
6 1ny9_A Transcriptional activat 66.3 3.1 0.00013 15.0 2.8 38 1759-1796 97-134 (143)
7 2p4f_A Similar to SP|P32453 sa 64.5 1.7 7.1E-05 17.3 0.9 19 1731-1749 114-132 (299)
8 2q7r_A Arachidonate 5-lipoxyge 57.1 4.3 0.00018 13.8 5.2 25 100-125 80-104 (161)
9 2fe8_A PP1AB, ORF1AB, replicas 54.0 4.8 0.0002 13.5 1.7 25 1736-1760 133-157 (315)
10 3mp2_A Non-structural protein 48.7 5.6 0.00024 12.8 1.7 24 1737-1760 40-63 (211)
11 1xme_C Cytochrome C oxidase po 45.5 6.2 0.00026 12.5 3.2 20 139-159 7-26 (34)
12 2qr4_A Peptidase M3B, oligoend 43.9 6.6 0.00028 12.3 4.1 59 1736-1794 512-579 (587)
13 1e68_A Bacteriocin AS-48; bact 34.7 8.8 0.00037 11.2 0.9 23 101-123 23-45 (70)
14 1kf6_D Fumarate reductase 13 k 31.9 9.6 0.0004 10.9 6.5 86 94-181 7-93 (119)
15 3h90_A Ferrous-iron efflux pum 31.3 9.8 0.00041 10.8 4.5 22 99-120 71-92 (283)
16 2eqb_B RAB guanine nucleotide 29.7 10 0.00044 10.6 14.3 30 226-255 11-40 (97)
17 2nq2_A Hypothetical ABC transp 29.4 11 0.00044 10.5 4.4 19 86-104 80-98 (337)
18 1vf5_H Protein PET N; photosyn 28.1 11 0.00046 10.4 3.3 17 150-166 11-27 (29)
19 2bs2_C Quinol-fumarate reducta 27.5 11 0.00047 10.3 8.5 70 91-160 14-98 (256)
20 3ijm_A Uncharacterized restric 27.5 3.4 0.00014 14.7 -2.5 33 1721-1753 90-136 (151)
21 3odu_A C-X-C chemokine recepto 26.8 12 0.00048 10.2 2.7 14 75-88 36-49 (502)
22 1q90_R Cytochrome B6-F complex 24.8 13 0.00053 9.9 2.5 13 145-157 27-39 (49)
23 3ol1_A Vimentin; structural ge 24.2 13 0.00055 9.7 15.2 45 225-269 7-51 (119)
24 2ksd_A Aerobic respiration con 22.4 15 0.00063 9.3 4.0 40 114-161 38-77 (115)
25 2gsm_B Cytochrome C oxidase su 22.4 15 0.00063 9.3 6.0 18 148-165 80-97 (262)
26 2cqn_A Formin-binding protein 21.9 15 0.00065 9.1 1.5 19 1761-1779 29-47 (77)
27 1cnt_1 CNTF, ciliary neurotrop 21.8 16 0.00066 9.1 2.8 34 1746-1792 147-180 (187)
28 2gqc_A Rhomboid intramembrane 21.2 14 0.00057 9.6 -0.4 15 1736-1750 51-65 (70)
29 2wsc_L Photosystem I reaction 20.8 17 0.00071 8.8 0.8 18 107-124 95-112 (216)
30 1s4k_A Putative cytoplasmic pr 20.5 17 0.00073 8.7 1.6 20 1731-1750 26-45 (120)
No 1
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 1gw3_A 1gw4_A
Probab=97.43 E-value=0.00078 Score=45.37 Aligned_cols=231 Identities=8% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999--99999999999999999999999999999999999999999999999999999
Q gi|254781029|r 323 ISSKIDQLLEVLHSTSIVITKDFDN--RIESLSNTLNNSGRSLANQVGNYTLMLGNNTDKVSIALKEQSQQFMQAFTSHI 400 (1828)
Q Consensus 323 l~~~~~~l~~~L~~~~~~~~~~~~~--~~e~l~~~L~~~~~~l~~~~~~~~~~l~~~~e~l~~~l~e~~~~l~e~l~~~~ 400 (1828)
+....+...+.+..........+.. ....+...|......+...+......+....+.+...+......+.+.+...+
T Consensus 11 ~~d~~~~~~~~~~~~~~~~~~~l~~s~~~~~l~~~l~e~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (243)
T 2a01_A 11 VKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDL 90 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999899999998874789999999999999999999999998789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781029|r 401 CEMSNFFSEKQKSITVTLNDVLQSLRISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSITDF 480 (1828)
Q Consensus 401 ~e~~~~l~~~~~~l~~~l~~~~~~l~~~l~e~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 480 (1828)
.++...+......+...+......+...+......+...+....+.+...+......+...+......+...+......+
T Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 170 (243)
T 2a01_A 91 EEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDEL 170 (243)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999878899999999999999998999999999988668999999876789999999999999998889999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999999999844
Q gi|254781029|r 481 SSFYKDNLSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDILSKKQNNISQITSMN 553 (1828)
Q Consensus 481 ~~~~~~~~~el~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~ 553 (1828)
...+...+..+...+...+..+...+......+...+......+...+......+...+......+...+...
T Consensus 171 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~e~l~~~l~~~~e~l~~~l~~~~ee~~~~l~~q 243 (243)
T 2a01_A 171 RQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ 243 (243)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7768999999998888889999999999999999999999999999879999999999999999999876578
No 2
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=96.68 E-value=0.031 Score=31.92 Aligned_cols=163 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999--9999999999999999999999999999999999999999999999999999
Q gi|254781029|r 342 TKDFDNRIESLSNTLNNSGRSLANQV--GNYTLMLGNNTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLN 419 (1828)
Q Consensus 342 ~~~~~~~~e~l~~~L~~~~~~l~~~~--~~~~~~l~~~~e~l~~~l~e~~~~l~e~l~~~~~e~~~~l~~~~~~l~~~l~ 419 (1828)
.....++.......+.........++ ......++..+......+......+.+.|.....++...+......+...+.
T Consensus 26 ~e~~~~~f~dyv~~~~~~a~~~~~~l~~se~~~el~~~l~e~~~el~~~~~~l~~~L~p~~~e~~~~l~~~~e~l~~~l~ 105 (191)
T 1nfn_A 26 WELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLG 105 (191)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999997689999988878999999999998899999999999998687899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781029|r 420 DVLQSLRISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSITDFSSFYKDNLSEFESNLQGNI 499 (1828)
Q Consensus 420 ~~~~~l~~~l~e~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~el~~~l~~~~ 499 (1828)
.....+...+.....++...+....+.....+......+..++.....++...+.....++...+...+.++...+....
T Consensus 106 ~~~eelr~~l~~~~~el~~~~~~~~eelr~~l~~~~eel~~~l~~~~eel~~~L~~~~ee~~~k~~~~~eelr~~l~p~~ 185 (191)
T 1nfn_A 106 ADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLV 185 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988779999999999899999988889999999999789999998899999999999989999999988779
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254781029|r 500 DKLQG 504 (1828)
Q Consensus 500 ~~l~~ 504 (1828)
..+..
T Consensus 186 e~~r~ 190 (191)
T 1nfn_A 186 EQGRV 190 (191)
T ss_dssp -----
T ss_pred HHHHC
T ss_conf 98734
No 3
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=94.50 E-value=0.18 Score=25.54 Aligned_cols=134 Identities=10% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781029|r 361 RSLANQVGNYTLMLGNNTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDVLQSLRISLQEKEDSFCSNL 440 (1828)
Q Consensus 361 ~~l~~~~~~~~~~l~~~~e~l~~~l~e~~~~l~e~l~~~~~e~~~~l~~~~~~l~~~l~~~~~~l~~~l~e~~~~~~~~l 440 (1828)
+.+.+.|-.....+....+.....+ +...+.+.+...+.+..+.+......+...+......+...+......++..+
T Consensus 27 e~~~~~f~~y~~~v~~~a~~~~e~l--~~se~~~el~~~l~e~~~~l~~~~~~l~~~l~p~aee~~~~l~~~~e~lr~~l 104 (165)
T 1gs9_A 27 ELALGRFWDYLRWVQTLSEQVQEEL--LSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARL 104 (165)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHH--HSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999779999999998799999999--98899999999999999999999999999877679999999889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999
Q gi|254781029|r 441 KSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSITDFSSFYKDNLSEFESNLQ 496 (1828)
Q Consensus 441 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~el~~~l~ 496 (1828)
....+.....+......+...+.....++...+.....++...+...+.++..++.
T Consensus 105 ~~~~eelr~kl~~~~eEl~~~l~~~~ee~r~~l~p~~eelr~~l~~~~eelr~kL~ 160 (165)
T 1gs9_A 105 GADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87899999999988999999999999999998799999999999999999999876
No 4
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle state; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=89.30 E-value=0.54 Score=21.43 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999
Q gi|254781029|r 226 RSEIEVLENNYTKSEMRIDNITQNLKQERE 255 (1828)
Q Consensus 226 ~~ev~~ler~y~dnE~rir~L~~el~~ere 255 (1828)
..|+..|.+++++.-.+++..++++...++
T Consensus 111 ~dEi~~La~~fN~M~~~L~~~~~~~~~~~~ 140 (163)
T 2f95_B 111 EDEIGDLYAAFDEMRQSVRTSLEDAKNARE 140 (163)
T ss_dssp ------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 978999999999999999999999999999
No 5
>2uui_A Leukotriene C4 synthase; leukotriene signalling, leukotriene biosynthesis, membrane, eicosanoid, transmembrane, membrane protein, APO, lyase, mapeg; HET: LMT PLM; 2.0A {Homo sapiens} SCOP: f.56.1.1 PDB: 2uuh_A* 3hkk_A* 2pno_A*
Probab=78.52 E-value=1.7 Score=17.19 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 27999999999999999999998316214555765640648899999999999999999999999
Q gi|254781029|r 99 IALRNAFMSSLIWLACELGFLIKFYTNSPMDSFYDFAMRPEVITLFLVVSVVPILLFFSFFIMIS 163 (1828)
Q Consensus 99 ~~~~~~~~~s~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~ 163 (1828)
.|.| ++++.++|+.|=+..++++..+..-...+-..+....++++ +..++=|+.+|..+.+-|
T Consensus 81 ~p~~-a~~lG~~~~vgRi~ha~GY~~~~~kr~~g~~~~~l~~~~ll-~~a~~gil~~~L~~~~~~ 143 (156)
T 2uui_A 81 HEGA-AALCGLVYLFARLRYFQGYARSAQLRLAPLYASARALWLLV-ALAALGLLAHFLPAALRA 143 (156)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 8999-99999999999999997873684426677379999999999-999999999999999846
No 6
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=66.26 E-value=3.1 Score=15.04 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25998999999850788789978999999999999998
Q gi|254781029|r 1759 KGQKVFLNLQEQYKADSALRNAIDRYISNFEEMLSEIA 1796 (1828)
Q Consensus 1759 ~~~~~~~~i~~~y~~d~~f~~~v~ry~~~fe~~l~~~~ 1796 (1828)
-....|.-|.+-|-.||.|+...|+|-..+-..|+++.
T Consensus 97 ~s~e~~~~L~~mYv~D~rF~~~yd~~~~Gla~fl~~AI 134 (143)
T 1ny9_A 97 CGYEMHTCLGEMYVSDERFTRNIDAAKPGLAAYMRDAI 134 (143)
T ss_dssp CCHHHHHHHHHHTTSTHHHHHHHGGGSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 98999999999876887899863145830999999999
No 7
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL315C ATP11; half barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs 138}
Probab=64.54 E-value=1.7 Score=17.26 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=8.2
Q ss_pred HCCCHHHHHHHHHHHCCCC
Q ss_conf 1801389999997507456
Q gi|254781029|r 1731 IDYDAFVQLWKSYTLGEDD 1749 (1828)
Q Consensus 1731 ~~~~~~~~~w~~y~~g~~~ 1749 (1828)
.+.+-...+|+-|..+..+
T Consensus 114 ~~~~eI~~IWr~~h~~~~~ 132 (299)
T 2p4f_A 114 LSKQEVEFLWRAKWSNRDD 132 (299)
T ss_dssp SCHHHHHHHHHHHTTTCSS
T ss_pred CCHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999717998
No 8
>2q7r_A Arachidonate 5-lipoxygenase-activating protein; flap, mapeg, membrane protein, lipid transport; HET: 3CS; 4.00A {Homo sapiens} SCOP: f.56.1.1 PDB: 2q7m_A*
Probab=57.08 E-value=4.3 Score=13.83 Aligned_cols=25 Identities=12% Similarity=0.373 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 79999999999999999999983162
Q gi|254781029|r 100 ALRNAFMSSLIWLACELGFLIKFYTN 125 (1828)
Q Consensus 100 ~~~~~~~~s~~w~~~~~~~~~~~~~~ 125 (1828)
|.| |+++.++|+.|=..+++++.++
T Consensus 80 p~~-aa~lG~~~~vgR~~Ya~GY~~~ 104 (161)
T 2q7r_A 80 QVP-AAFAGLMYLFVRQKYFVGYLGE 104 (161)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 899-9999989999999999898378
No 9
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=53.98 E-value=4.8 Score=13.46 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=14.1
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 8999999750745620677412525
Q gi|254781029|r 1736 FVQLWKSYTLGEDDIFSKRLYTIKG 1760 (1828)
Q Consensus 1736 ~~~~w~~y~~g~~~~f~~~~~~~~~ 1760 (1828)
-.+||..|+.|+...|...+|..-+
T Consensus 133 l~~aw~~f~~Gd~~~FV~~~Ya~~~ 157 (315)
T 2fe8_A 133 LQEAYYRARAGDAANFCALILAYSN 157 (315)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 9999999857990799999998559
No 10
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus strain purdue}
Probab=48.71 E-value=5.6 Score=12.83 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=19.8
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999750745620677412525
Q gi|254781029|r 1737 VQLWKSYTLGEDDIFSKRLYTIKG 1760 (1828)
Q Consensus 1737 ~~~w~~y~~g~~~~f~~~~~~~~~ 1760 (1828)
.++|..|+.|+...|.+.+|-.-|
T Consensus 40 ~~aw~~F~~Gdv~~fV~~~Ya~~~ 63 (211)
T 3mp2_A 40 NEAWEKFKKGDVMDFVNLCYAATT 63 (211)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 899998858997899999999639
No 11
>1xme_C Cytochrome C oxidase polypeptide IIA; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: f.23.9.1 PDB: 2qpd_C* 2qpe_C* 3bvd_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C*
Probab=45.47 E-value=6.2 Score=12.46 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889999999999999999999
Q gi|254781029|r 139 EVITLFLVVSVVPILLFFSFF 159 (1828)
Q Consensus 139 ~~~~~~~~~~~~p~~~~~~~a 159 (1828)
+.+|+++... +.|+.||+-.
T Consensus 7 gal~vi~il~-l~ilvfw~gv 26 (34)
T 1xme_C 7 GALAVILVLT-LTILVFWLGV 26 (34)
T ss_dssp HHHHHHHHHH-HHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHHHH
T ss_conf 1579999999-9999999999
No 12
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2, protein structure initiative; 2.50A {Enterococcus faecium DO}
Probab=43.87 E-value=6.6 Score=12.28 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCCCHH--HHHHHHHHHHHHHHHHHHHHCCH---HH-H---HHHHHHHHHHHHHHHH
Q ss_conf 89999997507456206--77412525998999999850788---78-9---9789999999999999
Q gi|254781029|r 1736 FVQLWKSYTLGEDDIFS--KRLYTIKGQKVFLNLQEQYKADS---AL-R---NAIDRYISNFEEMLSE 1794 (1828)
Q Consensus 1736 ~~~~w~~y~~g~~~~f~--~~~~~~~~~~~~~~i~~~y~~d~---~f-~---~~v~ry~~~fe~~l~~ 1794 (1828)
+.++|.+|+.+...+.. |.+...-|-....++-++...|+ +| + ..|...|.+||+||..
T Consensus 512 a~~~~~~~~~~~~~~~~~y~~~L~~Ggs~~~~e~~k~~G~d~~~~~~~~~~~~~~~~~i~e~~~l~~~ 579 (587)
T 2qr4_A 512 ASALAKKILNQEPEALENYLAYLKAGNSDYPVEVMKKAGVDMTQAAYIEDAMSMFEQRLNELEELIDR 579 (587)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHCSCSCHHHHHHHTTCCTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999976888999999997174999999999983999998899999999999999999999984
No 13
>1e68_A Bacteriocin AS-48; bacteriocins, cationic antibacterial peptides, solution structure, five-helixglobule, cyclic polypeptide; NMR {Enterococcus faecalis} SCOP: a.64.2.1 PDB: 1o82_A* 1o83_A 1o84_A*
Probab=34.70 E-value=8.8 Score=11.21 Aligned_cols=23 Identities=9% Similarity=-0.122 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999831
Q gi|254781029|r 101 LRNAFMSSLIWLACELGFLIKFY 123 (1828)
Q Consensus 101 ~~~~~~~s~~w~~~~~~~~~~~~ 123 (1828)
-|++||+|++-+.|..|++.+..
T Consensus 23 g~vttivsil~avgsgglsllaa 45 (70)
T 1e68_A 23 GWVTTIVSILTAVGSGGLSLLAA 45 (70)
T ss_dssp CCHHHHHHHHHTTSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCHHHHHH
T ss_conf 50335999999973662899998
No 14
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D*
Probab=31.94 E-value=9.6 Score=10.88 Aligned_cols=86 Identities=16% Similarity=0.216 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 18732279999999999999999999983162-14555765640648899999999999999999999999999999999
Q gi|254781029|r 94 KNSLNIALRNAFMSSLIWLACELGFLIKFYTN-SPMDSFYDFAMRPEVITLFLVVSVVPILLFFSFFIMISRARDMHDAS 172 (1828)
Q Consensus 94 ~~~s~~~~~~~~~~s~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~r~~~~~~~a 172 (1828)
+||---+||.-+-+-+.|.+.-........+- -+++-++.-..+..-+..|+...++-.+++-..+.+.|-| |+-+=
T Consensus 7 KRS~EPi~WgLFgAGG~~~Al~~PvlIll~gillPlG~~~~~a~sy~~i~aFa~s~iG~l~ll~~i~lplWh~--~HRih 84 (119)
T 1kf6_D 7 KRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCG--LHRMH 84 (119)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred CCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_conf 8778985131144660279999889999999998635678653489999999860799999999999999999--99999
Q ss_pred HHHHHHHHH
Q ss_conf 999999997
Q gi|254781029|r 173 QSIAGIALR 181 (1828)
Q Consensus 173 ~~m~~~a~r 181 (1828)
..|-+.-++
T Consensus 85 h~lHDlkih 93 (119)
T 1kf6_D 85 HAMHDLKIH 93 (119)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHCEE
T ss_conf 877542010
No 15
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=31.35 E-value=9.8 Score=10.80 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2799999999999999999999
Q gi|254781029|r 99 IALRNAFMSSLIWLACELGFLI 120 (1828)
Q Consensus 99 ~~~~~~~~~s~~w~~~~~~~~~ 120 (1828)
.-+..+.+.+++++++|+.+.+
T Consensus 71 ~E~l~~l~~~~~l~~~~~~~~~ 92 (283)
T 3h90_A 71 AESLAALAQSMFISGSALFLFL 92 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5079999999999999999999
No 16
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.75 E-value=10 Score=10.60 Aligned_cols=30 Identities=10% Similarity=0.400 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999
Q gi|254781029|r 226 RSEIEVLENNYTKSEMRIDNITQNLKQERE 255 (1828)
Q Consensus 226 ~~ev~~ler~y~dnE~rir~L~~el~~ere 255 (1828)
+++++.|+..+++.+.+|..|-.+|..++.
T Consensus 11 r~~~~~l~~~~~~~e~e~~~l~~~L~~e~~ 40 (97)
T 2eqb_B 11 KEDYNTLKRELSDRDDEVKRLREDIAKENE 40 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999998679999999999999999
No 17
>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=29.35 E-value=11 Score=10.55 Aligned_cols=19 Identities=26% Similarity=0.099 Sum_probs=7.6
Q ss_pred HHHHHHHHCCCCCHHHHHH
Q ss_conf 9899985418732279999
Q gi|254781029|r 86 THILQNIGKNSLNIALRNA 104 (1828)
Q Consensus 86 ~~~~~~l~~~~s~~~~~~~ 104 (1828)
|.++|++-++|-..||++-
T Consensus 80 G~llQ~~~rNpLA~P~iLG 98 (337)
T 2nq2_A 80 GVVLQGIFRNPLVNPHIIG 98 (337)
T ss_dssp HHHHHHHTTCTTCCTTTTS
T ss_pred HHHHHHHCCCCCCCHHHHH
T ss_conf 9999986579999906654
No 18
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=28.10 E-value=11 Score=10.39 Aligned_cols=17 Identities=6% Similarity=0.223 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999
Q gi|254781029|r 150 VPILLFFSFFIMISRAR 166 (1828)
Q Consensus 150 ~p~~~~~~~a~~~~r~~ 166 (1828)
+-|+|.|..||.+|--+
T Consensus 11 llvvftwsiamvvwgrn 27 (29)
T 1vf5_H 11 LLVVFTWSIAMVVWGRN 27 (29)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHEEEEEEECCC
T ss_conf 88986312356887167
No 19
>2bs2_C Quinol-fumarate reductase diheme cytochrome B subunit C; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: f.21.2.1 PDB: 1qlb_C* 1e7p_C* 2bs3_C* 2bs4_C*
Probab=27.55 E-value=11 Score=10.32 Aligned_cols=70 Identities=10% Similarity=0.015 Sum_probs=38.9
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHH--------HCHHHHHHHHHHHHHHHHHH
Q ss_conf 854187322799999999999999999999831621-------455576564--------06488999999999999999
Q gi|254781029|r 91 NIGKNSLNIALRNAFMSSLIWLACELGFLIKFYTNS-------PMDSFYDFA--------MRPEVITLFLVVSVVPILLF 155 (1828)
Q Consensus 91 ~l~~~~s~~~~~~~~~~s~~w~~~~~~~~~~~~~~~-------~~~~~~~~~--------~~~~~~~~~~~~~~~p~~~~ 155 (1828)
+.+++.|+.|.|+=.+-|+-=+..++++...+++.+ .......++ ..|..+.++.+.+++|+++-
T Consensus 14 ~~~~~~s~~~~~l~~l~s~TGliL~lFl~~Hm~~n~~il~g~eafn~~a~~l~~~~~~~~~~p~~~~i~~~~l~~~~l~H 93 (256)
T 2bs2_C 14 TPERKKSRMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAH 93 (256)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCHHHHHHHHHHTTCTTTSSSCCTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 86656778737999999999999999999999999999719999999999998562434785099999999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254781029|r 156 FSFFI 160 (1828)
Q Consensus 156 ~~~a~ 160 (1828)
.++|+
T Consensus 94 ~~lal 98 (256)
T 2bs2_C 94 AFLAM 98 (256)
T ss_dssp HHHHG
T ss_pred HHHHH
T ss_conf 99999
No 20
>3ijm_A Uncharacterized restriction endonuclease-like fold superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily; 1.70A {Spirosoma linguale dsm 74}
Probab=27.52 E-value=3.4 Score=14.71 Aligned_cols=33 Identities=30% Similarity=0.570 Sum_probs=19.4
Q ss_pred HHHHHH---HHHHHCCCH-----------HHHHHHHHHHCCCCCHHH
Q ss_conf 157999---998718013-----------899999975074562067
Q gi|254781029|r 1721 DSLVEN---ISKFIDYDA-----------FVQLWKSYTLGEDDIFSK 1753 (1828)
Q Consensus 1721 ~s~s~d---i~~~~~~~~-----------~~~~w~~y~~g~~~~f~~ 1753 (1828)
+-|--| |-++|+-.. -..-|-|||.||.|+-|-
T Consensus 90 ~GlK~Dl~Kvi~LIeD~~YgIlEGFvynYkt~~W~rYR~Gd~G~at~ 136 (151)
T 3ijm_A 90 SGLKHDTSKIVKLIEDNAYGILEGFVFNYKTQQWLRYRLGDGGVATN 136 (151)
T ss_dssp GGHHHHHHHHHHHHHSSCSCCCEEEEEETTTTEEEEEETTSTTCCBS
T ss_pred CCCCCCHHHHHHHHHCCCCCHHEEEEEECCCCEEEEEECCCCCCCCC
T ss_conf 57633188888776157622110013430244057886179961222
No 21
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapien} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=26.84 E-value=12 Score=10.22 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=5.5
Q ss_pred CCCCCCCCCCHHHH
Q ss_conf 88775567798989
Q gi|254781029|r 75 YPANDLDNGGITHI 88 (1828)
Q Consensus 75 ~pa~~d~r~~~~~~ 88 (1828)
.|..+.+......+
T Consensus 36 ~~~~~~~~~~~~~i 49 (502)
T 3odu_A 36 EPCFREENANFNKI 49 (502)
T ss_dssp -CCCCCCCCTTHHH
T ss_pred CCCCCCCHHHHHHH
T ss_conf 77643120226783
No 22
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=24.79 E-value=13 Score=9.89 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254781029|r 145 LVVSVVPILLFFS 157 (1828)
Q Consensus 145 ~~~~~~p~~~~~~ 157 (1828)
++...+|++.||+
T Consensus 27 ~~g~~~py~~fFv 39 (49)
T 1q90_R 27 ITTLALGYGAFFV 39 (49)
T ss_dssp HHHHHHHHHHHHS
T ss_pred CHHHEEEEEEEEC
T ss_conf 0101110178861
No 23
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens}
Probab=24.18 E-value=13 Score=9.73 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999999999999
Q gi|254781029|r 225 VRSEIEVLENNYTKSEMRIDNITQNLKQEREAIINHGTQLCTSIA 269 (1828)
Q Consensus 225 v~~ev~~ler~y~dnE~rir~L~~el~~ere~i~~~ae~~r~~i~ 269 (1828)
-|++||.|..-|...=...|..|+.+..++..+....+.++..+.
T Consensus 7 ~~s~~S~l~~~YE~ei~~LR~qld~~~~ek~~le~e~~~l~~~~e 51 (119)
T 3ol1_A 7 HHSHMSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIM 51 (119)
T ss_dssp ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 556667609999999999999999999889899999988999999
No 24
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=22.42 E-value=15 Score=9.27 Aligned_cols=40 Identities=10% Similarity=0.258 Sum_probs=21.8
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983162145557656406488999999999999999999999
Q gi|254781029|r 114 CELGFLIKFYTNSPMDSFYDFAMRPEVITLFLVVSVVPILLFFSFFIM 161 (1828)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~ 161 (1828)
+-.++.+.+.|+-. +.|++.+ +++|.+++|-+.+|+-..+
T Consensus 38 ~q~~~~~~~~G~v~---~~Di~rs-----i~Fgll~aP~viYFls~vV 77 (115)
T 2ksd_A 38 VQMAVTMVLHGQVE---SIDVIRS-----IFFGLLITPWAVYFLSVVV 77 (115)
T ss_dssp HHHHHHHHSCCCSS---SSSCCST-----TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHEECCCC---HHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_conf 99978751016511---9999999-----9999999999999999999
No 25
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 1m56_B* 1m57_B*
Probab=22.39 E-value=15 Score=9.26 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999
Q gi|254781029|r 148 SVVPILLFFSFFIMISRA 165 (1828)
Q Consensus 148 ~~~p~~~~~~~a~~~~r~ 165 (1828)
.++|++++.+++++..+.
T Consensus 80 tiip~iil~~l~~~~~~~ 97 (262)
T 2gsm_B 80 TIVPIVILVAIGAFSLPV 97 (262)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999899999
No 26
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=21.95 E-value=15 Score=9.14 Aligned_cols=19 Identities=16% Similarity=0.517 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHCCHHHHH
Q ss_conf 9989999998507887899
Q gi|254781029|r 1761 QKVFLNLQEQYKADSALRN 1779 (1828)
Q Consensus 1761 ~~~~~~i~~~y~~d~~f~~ 1779 (1828)
..++++|++++..||.|+.
T Consensus 29 ~t~W~~v~~~~~~Dpry~a 47 (77)
T 2cqn_A 29 DAVWEDIRERFVKEPAFED 47 (77)
T ss_dssp TCCHHHHHHHHTTSHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHH
T ss_conf 9949999998747888775
No 27
>1cnt_1 CNTF, ciliary neurotrophic factor; cytokine, growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.1
Probab=21.84 E-value=16 Score=9.11 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 74562067741252599899999985078878997899999999999
Q gi|254781029|r 1746 GEDDIFSKRLYTIKGQKVFLNLQEQYKADSALRNAIDRYISNFEEML 1792 (1828)
Q Consensus 1746 g~~~~f~~~~~~~~~~~~~~~i~~~y~~d~~f~~~v~ry~~~fe~~l 1792 (1828)
|..++|-|.+|. |+-=.+|..=|+|-+.||..|-
T Consensus 147 ~~~~~F~~Kl~G-------------~~Vlrel~~w~~ra~rDl~~L~ 180 (187)
T 1cnt_1 147 GDGGLFEKKLWG-------------LKVLQELSQWTVRSIHDLRFIS 180 (187)
T ss_dssp ----CHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 872789999733-------------2469999999999999999997
No 28
>2gqc_A Rhomboid intramembrane protease; alpha-beta domain, hydrolase; NMR {Pseudomonas aeruginosa PAO1}
Probab=21.21 E-value=14 Score=9.60 Aligned_cols=15 Identities=20% Similarity=0.539 Sum_probs=8.1
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 899999975074562
Q gi|254781029|r 1736 FVQLWKSYTLGEDDI 1750 (1828)
Q Consensus 1736 ~~~~w~~y~~g~~~~ 1750 (1828)
..++..||++||-++
T Consensus 51 V~~ly~r~~~G~~~~ 65 (70)
T 2gqc_A 51 VRELYRRYPEGDPQA 65 (70)
T ss_dssp HHHHHTTSSSTTTTS
T ss_pred HHHHHHHHHCCCCCC
T ss_conf 999999867799463
No 29
>2wsc_L Photosystem I reaction center subunit XI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_L* 2wsf_L* 2o01_L*
Probab=20.84 E-value=17 Score=8.83 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999998316
Q gi|254781029|r 107 SSLIWLACELGFLIKFYT 124 (1828)
Q Consensus 107 ~s~~w~~~~~~~~~~~~~ 124 (1828)
+|-++=+.-+|++|++|-
T Consensus 95 LSP~lRGLEIGmAHGYfL 112 (216)
T 2wsc_L 95 VNPLLRGVEVGLAHGFLL 112 (216)
T ss_dssp SCHHHHHHHHHHHTTSSS
T ss_pred CCHHHHHHHHHHHCEEEE
T ss_conf 885552436502011357
No 30
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: a.35.1.6
Probab=20.50 E-value=17 Score=8.73 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=7.8
Q ss_pred HCCCHHHHHHHHHHHCCCCC
Q ss_conf 18013899999975074562
Q gi|254781029|r 1731 IDYDAFVQLWKSYTLGEDDI 1750 (1828)
Q Consensus 1731 ~~~~~~~~~w~~y~~g~~~~ 1750 (1828)
|-.+...+.|.+.-+||+.|
T Consensus 26 I~~~~~s~tWQ~WE~G~~~I 45 (120)
T 1s4k_A 26 ITQDNNSATWQRWEAGDIPI 45 (120)
T ss_dssp TSSSCCHHHHHHHHHTSSCC
T ss_pred HHCCCCHHHHHHHHCCCCCC
T ss_conf 96577689999997589789
Done!