HHSEARCH alignment of GI: 254781029 and SCOP domain: d1gs9a_

Alignment
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=94.95  E-value=0.081  Score=26.41  Aligned_cols=136  Identities=13%  Similarity=0.170  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254781029|r  399 HICEMSNFFSEKQKSITVTLNDVLQSLRISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSIT  478 (1828)
Q Consensus       399 ~~~e~~~~l~~~~~~l~~~l~~~~~~l~~~l~e~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~  478 (1828)
                      +..++.+.|......+....+.....+...      .+...+.....+....+......+..++.....++...+.....
T Consensus         4 ~~e~~~d~f~~y~~~l~~~a~~~~~~l~~s------el~~el~~~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~e   77 (144)
T d1gs9a_           4 RWELALGRFWDYLRWVQTLSEQVQEELLSS------QVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQ   77 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHHHHHHSS------HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             089999899999999987489999999867------99999889999999999999999999878779999988886599


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999
Q gi|254781029|r  479 DFSSFYKDNLSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDILS  540 (1828)
Q Consensus       479 ~~~~~~~~~~~el~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~l~  540 (1828)
                      .+...+...+.++..++......+...+......+...+....+.+...+......+...+.
T Consensus        78 ~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~~~~eel~~kL~  139 (144)
T d1gs9a_          78 AAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA  139 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999987899999999988999999998999999998789999999999889999999860


SCOP domain information

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Apolipoprotein
family: Apolipoprotein
domain: Apolipoprotein E
species: Human (Homo sapiens), E4 [TaxId: 9606]