RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer
[Candidatus Liberibacter asiaticus str. psy62]
(1828 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 93.1 bits (231), Expect = 5e-19
Identities = 88/556 (15%), Positives = 170/556 (30%), Gaps = 199/556 (35%)
Query: 128 MDSFYDFAMRPEVITL------FLVVSVVPILLFFSF------FIMI------SRARDMH 169
MD++ + RP ++ LV P FF F I A D
Sbjct: 1 MDAY---STRPLTLSHGSLEHVLLV----PTASFFIASQLQEQFNKILPEPTEGFAAD-- 51
Query: 170 DASQSIAGIALRLIDPEEYSSEKMQSISSAVRKEIV-LMTEEIDRAI-------SRASEL 221
D + A + + + Y S ++ +++ L E + + A++L
Sbjct: 52 DEPTTPAELVGKFL---GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 222 ----EKTVRSEIEVLENNYTKSEMRIDNITQNLKQEREAIINH------------GTQLC 265
+ T+ E+++N T M K+ A+ G Q
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFD---KKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 266 TS-----IAEVH---ESLKEELSLTSEEISVHLSRAIDSFQSI----VDVRIAKVTEKTT 313
T + +++ L +L S E L R + + +++ + + +
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-LEWLENPSN 224
Query: 314 R-----------------IVQESAQ-TISSKI-----DQLLEVL-----HS----TSIVI 341
++Q A +++K+ +L L HS T++ I
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 342 T-----KDF-DNRIESLS---------------NTLNNSGR--SLANQVGNYTLMLGNNT 378
+ F + ++++ +L S SL N G + ML
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML---- 339
Query: 379 DKVSIA-L-KEQSQQFMQAFTSHICEMSNFFSEKQKSITVTL-----NDVLQSLRISLQE 431
SI+ L +EQ Q ++ SH+ KQ + ++L N V+ SL
Sbjct: 340 ---SISNLTQEQVQDYVNKTNSHLPA------GKQ--VEISLVNGAKNLVVSGPPQSLY- 387
Query: 432 KEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNS---ITD-FSSFYKDN 487
TLR+ + ++RI F + ++ F+N + F S
Sbjct: 388 ---GLNL--------TLRKAKAPSGLDQSRIP-FSERKLK-FSNRFLPVASPFHSHL--- 431
Query: 488 LSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLF--------EDIL 539
L D + +DL +N+ + K + D+
Sbjct: 432 -------LVPASDLI----------NKDLVKNNVS-----FNAKDIQIPVYDTFDGSDLR 469
Query: 540 SKKQNNISQITSMNTE 555
+ +I
Sbjct: 470 VLSGSISERIVDCIIR 485
Score = 86.9 bits (215), Expect = 4e-17
Identities = 102/640 (15%), Positives = 197/640 (30%), Gaps = 237/640 (37%)
Query: 1016 TAVSTQTINLENNLKEQEKSLSRVVDTSASSFKYLSDSIQTLAQELVSVIGSMSQSTTDI 1075
A ST+ + L + SL V+ +SF S L ++ + + T
Sbjct: 2 DAYSTRPLTLSH------GSLEHVLLVPTASFFIAS----QLQEQFNK---ILPEPTEGF 48
Query: 1076 SGKLEISLDSVNQKIQKCREFFGDNIVAFMDEISKVMEISEKRISQRT-------QEISQ 1128
+ E + + + +F G ++ + ++ Q E
Sbjct: 49 AADDEPT--TP---AELVGKFLG-----YV-----SSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 1129 QLLQNNDVIT-----NQIIDSTSRVRGEIVDISNKFIETSRVLEQREEKFH-SAL-DSFS 1181
L+ ND+ Q D+T E+ I N +I + ++ +K SAL +
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKEL--IKN-YITARIMAKRPFDKKSNSALFRAVG 150
Query: 1182 DNISRI----------------LLDVDHTISSHTNESRSLIEQRIHEVKDVLSNLDRALE 1225
+ +++ L D+ T L+ I + LS L R
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTY-------HVLVGDLIKFSAETLSELIRTTL 203
Query: 1226 SYGSTVFKQFKEYVQCFETNMENMESLFDKNNDSML---LSFKERSNILDNI-LSQ---- 1277
K F + + +EN + D D +L +S L I + Q
Sbjct: 204 ----DAEKVFTQGL-NILEWLENPSNTPD--KDYLLSIPISCP-----L--IGVIQLAHY 249
Query: 1278 ----RSM-----EISDSISGAF-HKEG---NAVVNVID--QQIYNAANALKKLEALLISD 1322
+ + E+ + GA H +G + D + + + K + L
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF--VSVRKAITVLFFIG 307
Query: 1323 VEKITNRITDSSQD---VTTI----ISDATDS--------LNKVDERLHQTTNRITETTG 1367
V + T++ + D+ ++ L+ + Q + + +T
Sbjct: 308 VR---------CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 1368 HIDTVLAESSKL----------------------FE---KKIKDLGEI--SRVSLLQMSE 1400
H L ++ +K K + SR+ SE
Sbjct: 359 H----LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF---SE 411
Query: 1401 -----------IVSKFDKNSQILIKSHDSLMK--AQSETKLSLD---------KDANNLV 1438
+ S F +S +L+ + D + K ++ + D ++L
Sbjct: 412 RKLKFSNRFLPVASPF--HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 1439 DLTSRLVSKSSEAQKFVMSILVD--VKKIV--EQADFLSDTVVKNMTDSIQSSFIKID-- 1492
L+ + + +VD ++ V E T K ++ I +D
Sbjct: 470 VLSGSISER-----------IVDCIIRLPVKWETT-----TQFK-------ATHI-LDFG 505
Query: 1493 -------GTLSNIETRSRD-T-VRLI-----DHNLAD-IG 1517
G L++ R++D T VR+I D N D G
Sbjct: 506 PGGASGLGVLTH---RNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 86.1 bits (213), Expect = 7e-17
Identities = 89/622 (14%), Positives = 177/622 (28%), Gaps = 272/622 (43%)
Query: 755 LHSGSANIESELSAISKAMNKSIDDVETISTALKERCQELGSDLVNHSDKVLSSLKQAQE 814
L GS +E L + TA +L ++ L + E
Sbjct: 11 LSHGS--LEHVLL---------------VPTASFFIASQL-------QEQFNKILPEPTE 46
Query: 815 LLCTTFAQRND------------SFVNALADNQSK-------------FENNLVNQS--H 847
FA ++ +V++L + FEN + + H
Sbjct: 47 ----GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 848 LLLDKLSSDIQ----KLTDI--AYSKAIDVAN-SLTEIQGNVGVTLENHSQAMLEKISAS 900
L KL + K ++ Y A +A + + A+ +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK----------SNSALFR--AVG 150
Query: 901 N---TLVAKTF------EECMSNILLSYDENRQTLDKKLSDHIDVLRQNLAGSENKIDGA 951
LVA F ++ ++E L D
Sbjct: 151 EGNAQLVA-IFGGQGNTDDY-------FEE--------LRDLYQTYHV------------ 182
Query: 952 IGSASQFIRDILDENSSRIESLLSCSNNSVNSTLLRSHQKFDRLLQEKSDELIQLLDNKA 1011
+ D++ L S L+R+ +++ + + +++ L+N +
Sbjct: 183 ------LVGDLIK----FSAETL--------SELIRTTLDAEKVFTQGLN-ILEWLENPS 223
Query: 1012 SC------LSTAVS------TQ------T-INLENNLKEQEKSLSR--------VVDT-- 1042
+ LS +S Q T L E L V
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 1043 -SASSFKYLSDSIQTLAQELVSV---IGSMSQST---TDISGK-LEISLD---------- 1084
S+ +S ++ ++V IG T + LE SL+
Sbjct: 284 AETDSW----ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 1085 SVN----QKIQKCREFFGDNIVAFMDEISKVMEISEKRISQRTQEISQQLLQN---NDVI 1137
S++ +++Q ++++ + + + K++ IS L N N V+
Sbjct: 340 SISNLTQEQVQD-----------YVNKTNSHLP-AGKQVE-----IS---LVNGAKNLVV 379
Query: 1138 T---------NQI---------IDSTSRV----RGEIVDISNKF--IETSRVLEQREEKF 1173
+ N +D SR+ R + SN+F + + F
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLD-QSRIPFSER--KLKFSNRFLPVASP---------F 427
Query: 1174 HSA-LDSFSDNISRILLDVDHTISS--------HTNESR-----------SLIEQRIHEV 1213
HS L SD I++ L+ + + ++ T + +++ I
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 1214 KDVLSNLDRALESYGST---VF 1232
V + + + +T F
Sbjct: 488 --V--KWETTTQ-FKATHILDF 504
Score = 85.0 bits (210), Expect = 1e-16
Identities = 86/531 (16%), Positives = 161/531 (30%), Gaps = 173/531 (32%)
Query: 407 FSEKQKSITVTLNDVLQSLRISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFL 466
+ S+ L V + + ++ F L T+ D+ T + FL
Sbjct: 9 LTLSHGSLEHVL-LVPTASFFIASQLQEQFNKILPEPTEGF--AADDEPTTPAELVGKFL 65
Query: 467 KEIV-ETFNNSITDFSSFYKDNLSEFESN-LQGNIDKLQGCFADSHG------NMEDLFL 518
+ + + F L+EFE+ L+GN D H D L
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN---------DIHALAAKLLQENDTTL 116
Query: 519 SNIQTI-----------GSNLDKK--TLLFEDILSKKQNNISQITSM-----NTERLENT 560
+ + DKK + LF + +Q+ ++ NT+
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAV----GEGNAQLVAIFGGQGNTDDYFEE 172
Query: 561 LTNSINSLKDMLEEKRQRIDSDIGKKSEELCS---SFNSSYQKVSNVIS---------DR 608
L + + ++ + I + EL + + N++ D+
Sbjct: 173 LRDLYQTYHVLVGD---LIKF-SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 609 EKLFSN----------SLAR--------------VQSHFEETIAGHPQSIVDS--ISNST 642
+ L S LA ++S+ + GH Q +V + I+ +
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGLVTAVAIAETD 287
Query: 643 ------NNLYDKIMVL---------AA---ALSES--QKSLDN---------SLKAHATD 673
++ I VL A +L S + SL+N S+ +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 674 VVHKI---TNA---ENQ-----LVNRFDESSKNIICS-YNSSNNKLETIFQKHLHSFNDT 721
V TN+ + LVN +KN++ S S L+ N T
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVN----GAKNLVVSGPPQS-----------LYGLNLT 392
Query: 722 F-NNKSDHVSGILKNSTQH-IDDLFSNNAKRMEELLHSG---SANIESELSAISKAMNKS 776
K+ SG+ Q I FS +R + + ++ S L + A +
Sbjct: 393 LRKAKAP--SGL----DQSRI--PFS---ERKLKFSNRFLPVASPFHSHL--LVPASDLI 439
Query: 777 IDDVETISTALKERCQEL---------GSDLVNHSDKVLSSLKQAQELLCT 818
D+ + + +++ GSDL S + + +
Sbjct: 440 NKDLVKNNVSFNA--KDIQIPVYDTFDGSDLRVLSGSISERIVDC---IIR 485
Score = 48.4 bits (115), Expect = 1e-05
Identities = 39/272 (14%), Positives = 71/272 (26%), Gaps = 107/272 (39%)
Query: 1550 IPNIENIFSTLEEKSDQSMQVFLDSLNNKVDSFTQKLSKTSDDIALTSR------RIAED 1603
+P F + +Q F L + F T+ L + + E
Sbjct: 22 VP--TASFFIASQLQEQ----FNKILPEPTEGFAADDEPTTP-AELVGKFLGYVSSLVEP 74
Query: 1604 LNNS--RDILKRDSVSLAKEAKESADTIRSAIEEQINTLKDFQKLITDSVKNN-----AA 1656
+L L L +F+ ++ N AA
Sbjct: 75 SKVGQFDQVLN-----LC--------------------LTEFE---NCYLEGNDIHALAA 106
Query: 1657 SYNKGLHSDEYNISQVDKRPSGKKTKNNHAIKEWFN-KILSSSTHSKGKSSSHIDISDKD 1715
L + D K IK + +I++ K +S+
Sbjct: 107 K----LLQEN------DTTLVKTK----ELIKNYITARIMAKRPFDKKSNSA-------- 144
Query: 1716 SLSSIDSLVENISKFIDYDAFVQLWKSYTLGEDDIFSKRLYTI-KGQ----KVFLNLQEQ 1770
L+++ + +L I GQ F L++
Sbjct: 145 -----------------------LFRA---VGEGNA--QLVAIFGGQGNTDDYFEELRDL 176
Query: 1771 YKADSALRNAIDRYISNFEEMLSEIAQSNDDS 1802
Y+ L + I E LSE+ ++ D+
Sbjct: 177 YQTYHVL---VGDLIKFSAETLSELIRTTLDA 205
Score = 46.1 bits (109), Expect = 7e-05
Identities = 76/517 (14%), Positives = 147/517 (28%), Gaps = 232/517 (44%)
Query: 1358 TTNR-ITETTGHIDTVLAESSKLFEKKIKDLGEISRVSLLQMSEIVSKFDKNSQILIKSH 1416
+ R +T + G ++ VL + F S LQ ++ ++IL +
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASF----------FIASQLQ--------EQFNKILPEPT 45
Query: 1417 DSLMKAQSETKLSLDKDANNLVDLTSRLVSKSSEAQKFVMSILVDVKKIVEQADFLSDTV 1476
+ A D + +L + + +V S++ + F D V
Sbjct: 46 EGF--AA-------DDEPTTPAELVGKFLG-------YVSSLVEPS----KVGQF--DQV 83
Query: 1477 VKNMTDSIQSSFIKIDGTLSNIETRSRDTVRLIDHNLADIGNKTVKTIDSNFVTLKE--- 1533
+ ++ + L + I H LA K + N TL +
Sbjct: 84 LNLCLTEFENCY------LEGND---------I-HALA------AKLLQENDTTLVKTKE 121
Query: 1534 --KSYDLSNHMRQKICSTIP-----------------------NIENIFSTLEEKSDQSM 1568
K+Y + M ++ N ++ F L + +
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ-TY 180
Query: 1569 QVFLDSLNNKVDSFTQKLSKTSDDIALTSRRIAEDLNNSR--DILK----RDS------- 1615
V + L +L +T+ D AE + ++ +IL+ +
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLD--------AEKV-FTQGLNILEWLENPSNTPDKDYL 231
Query: 1616 ----VSLAKEAKESADTIRSAIEEQINTLKDFQKLITDSVKNNAASYNKGL----HSDEY 1667
+S LI G+ H Y
Sbjct: 232 LSIPISCP--------------------------LI-------------GVIQLAH---Y 249
Query: 1668 NIS-QV-DKRPSGKKTKNNHAIKEWFNKILSSST-HSKGKSSSHIDISDKDSLSSIDSLV 1724
++ ++ P E L +T HS+G ++ + I++ DS S
Sbjct: 250 VVTAKLLGFTP-----------GE-LRSYLKGATGHSQGLVTA-VAIAETDSWES----- 291
Query: 1725 ENISKFIDYDAFVQLWKSYTLGEDDIFSKRLYTI--KGQKVF--LNLQEQYKADSALRNA 1780
F + + K+ T+ L+ I + + + +L DS
Sbjct: 292 -----F--FVSVR---KAITV---------LFFIGVRCYEAYPNTSLPPSILEDS----- 327
Query: 1781 IDRYISNFEE----MLS----EIAQSNDDSPLVQEHI 1809
+ N E MLS Q VQ+++
Sbjct: 328 ----LENNEGVPSPMLSISNLTQEQ-------VQDYV 353
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.7 bits (81), Expect = 0.087
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 1084 DSVNQK---IQKCREFFGDNIVAFMDEISKVM-----EISEKRISQRTQEISQQLLQNND 1135
D + Q+ I+K RE + +D SKVM E ++K + + Q S+Q+ +N
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQE-LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK- 135
Query: 1136 VITNQIID 1143
I N+I D
Sbjct: 136 -INNRIAD 142
Score = 29.5 bits (65), Expect = 7.2
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 16/66 (24%)
Query: 559 NTLTNSINSLKDMLEEKRQRI----------DSDIGKKSEELCSSFN--SSYQ----KVS 602
+ LT S++ EE+R+R+ + + +K+++ +N S Q K++
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 603 NVISDR 608
N I+D+
Sbjct: 138 NRIADK 143
Score = 29.1 bits (64), Expect = 9.1
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 1616 VSLAKEAKESADTIRSAIEEQINTLKDF---QKLITDSVKNNAASYNKGLHSDEYN---I 1669
++ A + ++IR EEQ L++ K++ + A K L +E+N
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKA---KKDL--EEWNQRQS 128
Query: 1670 SQVDKRPSGKKTKNNHAIKEWFNK 1693
QV+K K N A K ++ +
Sbjct: 129 EQVEK----NKINNRIADKAFYQQ 148
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.4 bits (80), Expect = 0.14
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 17/35 (48%)
Query: 1302 DQQIYNAANALKKLEA-L-LISDVEKITNRITDSS 1334
++Q ALKKL+A L L +D DS+
Sbjct: 18 EKQ------ALKKLQASLKLYAD---------DSA 37
Score = 34.2 bits (77), Expect = 0.28
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 658 ESQ--KSLDNSLKAHATD 673
E Q K L SLK +A D
Sbjct: 18 EKQALKKLQASLKLYADD 35
Score = 31.9 bits (71), Expect = 1.2
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 11/38 (28%)
Query: 1033 EK-SLSRVVDTSASSFK-YLSDSIQTLAQELVSVIGSM 1068
EK +L ++ +S K Y DS LA + +M
Sbjct: 18 EKQALKKL----QASLKLYADDSAPALA-----IKATM 46
Score = 30.7 bits (68), Expect = 2.8
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 1608 RDILKRDSVSLAKEAKESAD--TIRSAIE 1634
+ LK+ SL A +SA I++ +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transport; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 33.6 bits (76), Expect = 0.38
Identities = 8/118 (6%), Positives = 31/118 (26%), Gaps = 3/118 (2%)
Query: 1142 IDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALDSFSDNISRILLD---VDHTISSH 1198
+ S ++ ++ + L L + + D + T+
Sbjct: 30 ATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQF 89
Query: 1199 TNESRSLIEQRIHEVKDVLSNLDRALESYGSTVFKQFKEYVQCFETNMENMESLFDKN 1256
+ L + + + + K+ + F+ + ++ ++
Sbjct: 90 SKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRY 147
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 33.2 bits (75), Expect = 0.51
Identities = 23/198 (11%), Positives = 70/198 (35%), Gaps = 21/198 (10%)
Query: 310 EKTTRIVQESAQTISSKIDQLLEVLHSTSIVITKDFDNRIESLSNTLNNSGRSLANQVGN 369
K T+ + + + + + + + + ++SL+ ++SG + +
Sbjct: 174 GKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLND 233
Query: 370 YTLMLGNNTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDVLQSLRISL 429
G ++++ + EQ ++ + + K D++ + + ++
Sbjct: 234 AITEAGKTYEEIASLVAEQPKKDLHFLMECN--------HEYKGFLGCFPDIIGTHKGAI 285
Query: 430 QEKEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEI-------VETFNNSITDFS- 481
++ ++ L +T+ TL++ N + A E+ + +N+ I +
Sbjct: 286 EKVKE--SDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLE 343
Query: 482 ---SFYKDNLSEFESNLQ 496
FY+ + L
Sbjct: 344 QQVQFYETIAEKLRQALS 361
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Length = 409
Score = 32.8 bits (74), Expect = 0.81
Identities = 21/165 (12%), Positives = 48/165 (29%), Gaps = 14/165 (8%)
Query: 219 SELEKTVRSEIEVLENNYTKSEMRIDNITQNLKQEREAIINHGTQLCTSIAEVHESLKEE 278
++ T E+ +E + N T +++ + I ++ + E L ++
Sbjct: 30 NKYRLTTDGELLEIEGLLQQ----ATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQK 85
Query: 279 LSLTSEEISVHLSRAIDSFQSIVDVRIAKVTEKTTRIVQESAQTISSKIDQLLEVLHSTS 338
EEI I + ++ + + +I + KI QL
Sbjct: 86 SKKIIEEII-RYENTILAHENTIQQLTDMHIMNSNKI-----TQLKQKIAQLESHCQEPC 139
Query: 339 IVITKDFDNRIESLSNTLNNSGRSLANQVGNYTLMLGNNTDKVSI 383
+ + + N R + G Y + +
Sbjct: 140 KDTAEIQETTGRDCQDIANKGAR----KSGLYFIKPQKAKQSFLV 180
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA
interaction, nucleoprotein, supercoiled DNA; 3.10A
{Saccharomyces cerevisiae} SCOP: a.22.1.1
Length = 102
Score = 32.5 bits (74), Expect = 0.94
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 380 KVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDVLQSLRI 427
++S + E+ + +++F + S ++E K TVT DV+ +L+
Sbjct: 45 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 92
>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease,
transmembrane, hydrolase; 1.90A {Clostridium botulinum}
SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A*
1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A
1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 2etf_A 1z0h_A 2nm1_A
3g94_A 1f82_A
Length = 1290
Score = 32.2 bits (73), Expect = 1.2
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 438 SNLKSTTDNTLREVDNRTNTLENRITAFLKE--IVETFNNSITDFSSFYKDNLSEFESNL 495
SN+ ++ +++ N + I F+ + I D + + NL
Sbjct: 746 SNINIDFNDINSKLNEGINQAIDNINNFINGCSVSYLMKKMIPLAVEKLLDFDNTLKKNL 805
Query: 496 QGNIDKLQGCFADSHGNMEDLFLSNIQTI 524
ID+ + S + ++TI
Sbjct: 806 LNYIDENKLYLIGSAEYEKSKVNKYLKTI 834
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex,
multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1
PDB: 3c98_B
Length = 267
Score = 31.2 bits (70), Expect = 2.0
Identities = 36/211 (17%), Positives = 73/211 (34%), Gaps = 5/211 (2%)
Query: 485 KDNLSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDILSKKQN 544
KD E + D M++ F ++ I +DK E++ K
Sbjct: 2 KDRTQELRTAKDSXXXXXVTVTVDRDRFMDE-FFEQVEEIRGFIDKIAENVEEVKRKHSA 60
Query: 545 NISQITSMNTERLE-NTLTNSINSLKDMLEEKRQRIDSDIGKKSEELCSSFNSSYQK-VS 602
++ + E L + I + + K + I+ I ++ SS + +K
Sbjct: 61 ILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH 120
Query: 603 NVISDREKLFSNSLARVQSHFEETIAGH--PQSIVDSISNSTNNLYDKIMVLAAALSESQ 660
+ +S + + QS + E G Q + + ++ L D + A+ S
Sbjct: 121 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASG 180
Query: 661 KSLDNSLKAHATDVVHKITNAENQLVNRFDE 691
+D+S+ A + + +L N E
Sbjct: 181 IIMDSSISKQALSEIETRHSEIIKLENSIRE 211
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger,
propeller cluster, helical repeats, cullin repeats,
protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP:
a.4.5.34 a.118.17.1 e.40.1.1
Length = 759
Score = 31.2 bits (70), Expect = 2.0
Identities = 26/223 (11%), Positives = 72/223 (32%), Gaps = 42/223 (18%)
Query: 1598 RRIAEDLNNSRDILKRDSVSLAKEAKESADTIRSAIEEQINTLKDFQKLITDSVKNNAAS 1657
R+ + + + + +++ ++ +I + N
Sbjct: 327 SRVRGGQQALLQHWSEYIKTFGTAIVINPEKDKDMVQDLLDFKDKVDHVIEVCFQKNERF 386
Query: 1658 YNKGLHSDEYNISQVDKRPSGKKTKNNHAIKEWFNKILSSSTHSKGKSSSHIDISDKDSL 1717
N S E I++ +P+ ++++ SK ++ + + +D++
Sbjct: 387 VNLMKESFETFINKRPNKPA---------------ELIAKHVDSKLRAGNK-EATDEELE 430
Query: 1718 SSIDSLVENISKFIDYDAFVQLWKSYTLGEDDIFSKRLYTIKGQKVFLNLQEQYKADSAL 1777
++D ++ D F +K +KRL L + + A
Sbjct: 431 RTLDKIMILFRFIHGKDVFEAFYKKD-------LAKRL-----------LVGKSASVDAE 472
Query: 1778 RNAIDR--------YISNFEEMLSEIAQSNDDSPLVQEHIMSN 1812
++ + + + S E M ++ S D ++H+ +
Sbjct: 473 KSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQ 515
>1ypy_A Virion membrane protein; orthopox, variola virus, smallpox, L1,
viral protein; 1.51A {Vaccinia virus} PDB: 2i9l_I
Length = 184
Score = 31.4 bits (71), Expect = 2.2
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 10/134 (7%)
Query: 648 KIMVLAAALSESQKSLDNSLKAHATDVVHKITNAENQLVNRFDESSKNIICSYNSSNNKL 707
+ V +++ LD L A AT+ +T + V ++ NI S N+
Sbjct: 49 NLTVKNMCSADADAQLDAVLSA-ATETYSGLTPEQKAYVPAMFTAALNIQTSVNTVVRDF 107
Query: 708 ETIFQKHLHSFNDTFNNKSDHVSGILKNSTQHIDDLFSNNAKRME-ELLHSGSANIESEL 766
E ++ +S V LK ID+ + E +++GS+ +
Sbjct: 108 ENYVKQTCNSSAV--------VDNKLKIQNVIIDECYGAPGSPTNLEFINTGSSKGNCAI 159
Query: 767 SAISKAMNKSIDDV 780
A+ + K+ +
Sbjct: 160 KALMQLTTKATTQI 173
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain,
protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Length = 265
Score = 30.8 bits (69), Expect = 2.6
Identities = 9/118 (7%), Positives = 33/118 (27%), Gaps = 3/118 (2%)
Query: 1142 IDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALDSFSDNISRILLDVDHTISSHTNE 1201
+ S ++ ++ + L L + + D + S+
Sbjct: 30 ATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQF 89
Query: 1202 SRSLIE---QRIHEVKDVLSNLDRALESYGSTVFKQFKEYVQCFETNMENMESLFDKN 1256
S+ + E + + + + K+ + F+ + ++ ++
Sbjct: 90 SKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRY 147
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
1ku2_A
Length = 423
Score = 30.6 bits (68), Expect = 3.1
Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 2/144 (1%)
Query: 180 LRLIDPEEYSSEKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTKS 239
+ I + + V + +L + + L+ EI+ + K
Sbjct: 110 MEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKE 169
Query: 240 EMRIDNITQNLKQEREAIINHGTQLCTSIAEVHESLKEELSLTSEEISVHLSRAIDSFQS 299
R +I + + R+ +I +L SIA+ + +E + L RA++ F+
Sbjct: 170 HKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEY 229
Query: 300 IVDVRIAKVTEKTTRIVQESAQTI 323
+ T T I Q + I
Sbjct: 230 KRRFKF--STYATWWIRQAINRAI 251
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo
sapiens} PDB: 1st6_A
Length = 1066
Score = 30.6 bits (67), Expect = 3.5
Identities = 74/917 (8%), Positives = 231/917 (25%), Gaps = 28/917 (3%)
Query: 247 TQNLKQEREAIINHGTQLCTSIAEVHESLKE--ELSLTSEEISVHLSRAIDSFQSIVDVR 304
T+ ++ E + + L E K +L+ + +S + + V
Sbjct: 6 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKETVQTT 65
Query: 305 IAKVTEKTTRIVQESAQTISSKIDQLLEVLHSTSIVITKDFDNRIESLSNTLNNSGRSLA 364
++ ++ + +K+ Q ++L S + D I+ L+ + L
Sbjct: 66 EDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSV-PARDYLIDGSRGILSGTSDLLL 124
Query: 365 NQVGNYTLMLGNNTDKVSIALK-EQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDVLQ 423
+ + L + + M+ ++ + ++ K I ++
Sbjct: 125 TFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTH 184
Query: 424 SLRISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSITDFSSF 483
+ + L + ++ N+ I + ++ +
Sbjct: 185 QEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEE-ALKNRNFTVEKMSAEINE 243
Query: 484 YKDNLSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDILSKKQ 543
L + K + +++ + E + +
Sbjct: 244 IIRVLQLTSWDEDAWASKDTEAMKRALASIDSKLNQAKGWLRDPSASPGDAGEQAIRQIL 303
Query: 544 NNISQITSMNTERLENTLTNSINSLKDMLEEKRQRIDSDIGKKSEELCSSFNSSYQKVSN 603
+ ++ + + + + L M ++ G + + S
Sbjct: 304 DEAGKVGELCAGKERREILGTCKMLGQMTDQVADLRARGQGSSPVAMQKAQQVSQGLDVL 363
Query: 604 VISDREKLFSNSLARVQSHFEETIAGHPQSIVDSISNSTNNLYDKIMVLAAALSESQKSL 663
Q+ + + LA A ++
Sbjct: 364 TAKVENAARKLEAMTNSKQSIAKKIDAAQNWLADPNGGPEGEEQIRGALAEARKIAELCD 423
Query: 664 DNSLKAHATDVVHKITNAENQLVNRFDESSKNIICSYNSSNNKLETIFQKHLHSFNDTFN 723
D + + +I+ ++L + + + + + + + N
Sbjct: 424 DPKERDDILRSLGEISALTSKLADLRRQGKGDSPEARALAKQVATALQNLQTKTNRAVAN 483
Query: 724 NKSDHVSGILKNSTQHIDDLFSNNAKRMEELLHSGSANIESELSAISKAMNKSIDDVETI 783
++ + L+ + N + + + +E ++ M
Sbjct: 484 SRPAKAAVHLEGKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGHRLANVMMGPYRQDLLA 543
Query: 784 STALKERCQELGSDLVNHSDKVLSSLKQAQELLCTTFAQRNDSFVNALADNQSKFENNLV 843
++ +DL + + L + A+ S ++
Sbjct: 544 KCDRVDQLTAQLADLAARGEGESPQARALASQLQDSLKDLKARMQEAMTQEVSDVFSDTT 603
Query: 844 NQSHLLLDKLSSDIQKLTDI-------------------AYSKAIDVANSLTEIQGNVGV 884
LL ++ KA V + +
Sbjct: 604 TPIKLLAVAATAPPDAPNREEVFDERAANFENHSGKLGATAEKAAAVGTANKSTVEGIQA 663
Query: 885 TLENHSQAMLEKISASNTLVAKTFEECMSNILLSYDENRQTLDKKLSDHIDVLRQNLAGS 944
+++ + + +SA+ L+ + + +K++ +D +
Sbjct: 664 SVKTARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAIDTKSLL 723
Query: 945 ENKIDGAIGSASQFIRDILDENSSRIESLLSCSNNSVNSTLLRSHQKFDRLLQEKSDELI 1004
+ + + + + + + + N LL + ++ + K E +
Sbjct: 724 DASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARRANRILLVAKREVENSEDPKFREAV 783
Query: 1005 QLLDNKASCLSTAVSTQTINLENNLKEQ--EKSLSRVVDTSASSFKYLSDSIQTLAQELV 1062
+ ++ S + + + N+ + +KS + + ++ Q +
Sbjct: 784 KAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAFQPQEPDFX 843
Query: 1063 SVIGSMSQSTTDISGKLEISLDSVNQ--KIQKCREFFGDNIVAFMDEISKVMEISEKRIS 1120
+ Q + + D + +
Sbjct: 844 XXXXDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMMAAR 903
Query: 1121 QRTQEISQQLLQNNDVI 1137
Q E + + ND+I
Sbjct: 904 QLHDEARKWSSKGNDII 920
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma
protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1
PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Length = 191
Score = 30.7 bits (69), Expect = 3.6
Identities = 18/154 (11%), Positives = 42/154 (27%), Gaps = 9/154 (5%)
Query: 444 TDNTLREVDNRTNTLENRITAFL-------KEIVETFNNSITDFSSFYKDNLSEFESNLQ 496
T + R R +L +++ E +S + + + E L+
Sbjct: 15 RQQTEWQSGQRWELALGRFWDYLRWVQTLSEQVQEELLSS--QVTQELRALMDETMKELK 72
Query: 497 GNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDILSKKQNNISQITSMNTER 556
+L+ +Q + L L + + + + +TE
Sbjct: 73 AYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEE 132
Query: 557 LENTLTNSINSLKDMLEEKRQRIDSDIGKKSEEL 590
L L + + L+ L + +
Sbjct: 133 LRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGA 166
Score = 30.3 bits (68), Expect = 4.7
Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 7/121 (5%)
Query: 1104 FMDEISKVMEISEKRISQRTQEISQQLLQNNDVITNQIIDSTSRVRGEIVDISNKFIETS 1163
M E+ E++++ +E +L + ++ V G +V E
Sbjct: 67 TMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQYRG---EVQ 123
Query: 1164 RVLEQREEKFHSALDSFSDN----ISRILLDVDHTISSHTNESRSLIEQRIHEVKDVLSN 1219
+L Q E+ L S + R D+ ++ + +R E+ + +++ L
Sbjct: 124 AMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGP 183
Query: 1220 L 1220
L
Sbjct: 184 L 184
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase;
1.90A {Thermus thermophilus HB8}
Length = 311
Score = 30.4 bits (67), Expect = 3.6
Identities = 5/50 (10%), Positives = 13/50 (26%)
Query: 1709 IDISDKDSLSSIDSLVENISKFIDYDAFVQLWKSYTLGEDDIFSKRLYTI 1758
+ + L D + F ++ D+ +K +
Sbjct: 35 VWAEGRAWLLKTDGFLYREVALKGMGPFEVGFRGVAATASDLLAKMGRPL 84
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A
{Pyrococcus horikoshii} SCOP: a.22.1.2
Length = 70
Score = 30.1 bits (68), Expect = 4.2
Identities = 7/48 (14%), Positives = 23/48 (47%)
Query: 379 DKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLNDVLQSLR 426
++VS + ++++ + I + + F+ TV + D+ +++
Sbjct: 22 ERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69
>3hah_A Human pacsin1 F-BAR; pacsin,syndapin,FAP52,F-BAR, coiled coil,
cytoplasm, endocytosis, phosphoprotein, polymorphism,
SH3 domain; 2.77A {Homo sapiens} PDB: 3hai_A
Length = 325
Score = 30.1 bits (67), Expect = 4.4
Identities = 21/193 (10%), Positives = 62/193 (32%), Gaps = 10/193 (5%)
Query: 168 MHDASQSIAGIALRLIDPEEYSSEKMQSISSAVRKEIVLMTEEIDRAISRA-SELEKT-- 224
+ + ++ + ++ + K KE + + ++ ELE
Sbjct: 99 QEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKK 158
Query: 225 ----VRSEIEVLENNYTKSEMRIDNITQNLKQEREAIINHGTQLCTSIAEVHESLKEELS 280
E ++ S+ ++T +++ + ++ Q E +E + E++
Sbjct: 159 AYHLACKEEKLAMTREMNSKTEQ-SVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLEDVG 217
Query: 281 LTSEEISVHLSRAIDSFQSIVDVRIAKVTEKTTRIVQESAQTISSKIDQLLEVLHST--S 338
T+ + ++ + + Q + R+ + E I + +S + L
Sbjct: 218 KTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYIHVYRELEQAIRG 277
Query: 339 IVITKDFDNRIES 351
+D +
Sbjct: 278 ADAQEDLRWFRST 290
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A
{Thermococcus SP}
Length = 526
Score = 30.2 bits (68), Expect = 4.8
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 518 LSNIQTIGSNLDKKTLLFEDILSKKQNNISQITSMNTERLENTLTNSINSLKDMLEEKRQ 577
LSN T+ + D K L+ D+ KK + E++ T INSL++ ++E Q
Sbjct: 384 LSNTYTVMKDQDVKNLI--DLYKKK----------DREKINATTKAMINSLQEKIDEAEQ 431
Query: 578 RIDSDIGKKSEELCSSFNSSYQKVSNVISDREKL 611
+ G +E + + I+D +K
Sbjct: 432 LLAKAKGMNNENAIEYAQGAIDEYKAAINDLQKA 465
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure,
transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP:
d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A
Length = 342
Score = 29.9 bits (66), Expect = 5.2
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 1709 IDISDKDSLSSIDSLVENISKFIDYDAFVQLWKSYTLGEDDIFSK 1753
++ K L + D L E + Y WK+ ++ D+ +
Sbjct: 67 VEYCSKKLLLTTDVLNEGVHFLRSYIPEAVGWKAISVNVSDVIAN 111
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; pyruvate
dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA
ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB:
1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Length = 419
Score = 30.1 bits (67), Expect = 5.3
Identities = 25/269 (9%), Positives = 80/269 (29%), Gaps = 39/269 (14%)
Query: 1118 RISQRTQEISQQLLQNNDVITNQIIDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSAL 1177
R++ +E+ LL +N + + V+ + + +E + + L
Sbjct: 69 RLANTMREV--NLLPDNLLNRPSV----GLVQSWYMQSFLELLEYENKSPEDPQ----VL 118
Query: 1178 DSFSDNISRILLDVDHTISSHTN---ESRSLIEQRIHEVKDVLSNLDRALES-------- 1226
D+F + ++ + + + E + ++ LDR +
Sbjct: 119 DNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRMLI 178
Query: 1227 ------YGSTVFKQFKEYVQCFETNMENME---SLFDKNNDSMLLSFKERSNILDNILSQ 1277
+G +++ + + ++ + + +
Sbjct: 179 NQHTLLFGGDTNPVHPKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNA 238
Query: 1278 RSMEISDSISGAFHKEGNAVVNVIDQQIYNAANALKKLEALLISDVEKITNRITDSSQDV 1337
++ + + + + + N+ A +L + +T +D+
Sbjct: 239 KAPDKPIQVVYVPSHLFHMLFELFK----NSMRATVELYEDRKEGYPAVKTLVTLGKEDL 294
Query: 1338 TTIISD-----ATDSLNKVDERLHQTTNR 1361
+ ISD ++++ ++ T R
Sbjct: 295 SIKISDLGGGVPLRKIDRLFNYMYSTAPR 323
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase,
golgi apparatus, membrane, signal-anchor, transmembrane;
HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1
b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A*
3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A*
1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A*
2alw_A* 2f18_A* ...
Length = 1045
Score = 29.8 bits (66), Expect = 5.3
Identities = 42/340 (12%), Positives = 99/340 (29%), Gaps = 30/340 (8%)
Query: 161 MISRARDMHDASQSIAGIALRLIDPEEYSSEKMQSISSAVRKEIVLMTEEIDRAISRASE 220
R ++ A Q + ++ + + S S + ++ + +
Sbjct: 486 YEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDSRWPGSGVEDSRTTIIL 545
Query: 221 LEKTVRSEIEVLENNYTKSEMRIDNITQNLKQEREAIINH-GTQLCTSIAEVHESLKEEL 279
E + S+ V+ N T R + + ++ + + ++ V + L
Sbjct: 546 GEDILPSKHVVMHN--TLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDTL 603
Query: 280 SLTSEEISVHLSRAIDSFQSIVDVRIAKVTEKTTRIVQ-ESAQTISSKIDQLLEVLHSTS 338
+ T +H + ++ I R+ + T + +S +S LL + TS
Sbjct: 604 TKT-----IHPQGSTTKYRIIFKARVPPMGLATYVLTISDSKPEHTSYASNLLLRKNPTS 658
Query: 339 IVITKDFDNRIESLSNTLNNSGRSLANQVGNYTLMLGNNTDKVSIALKEQSQQFMQAFTS 398
+ + + ++ ++ + + +L + +F++
Sbjct: 659 LPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVR 718
Query: 399 HICEMS-----------NFFSEKQKSITVTLNDVLQSLRISLQEKEDSFCSNLKSTTDNT 447
+ S + Q + VT + S+ + L S
Sbjct: 719 SHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGLP----SVVHQTIMRGGAP 774
Query: 448 LREVDNRTNTLENRITAFLKEIVETFNNSITDFSSFYKDN 487
+L+N EIV I FY D
Sbjct: 775 EIRNLVDIGSLDN------TEIVMRLETHIDSGDIFYTDL 808
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 29.8 bits (66), Expect = 5.7
Identities = 32/291 (10%), Positives = 89/291 (30%), Gaps = 25/291 (8%)
Query: 209 EEIDRAISRASELEKTVRSEIEVLENNYTKSEMRIDNITQNLKQEREAIINHGTQLCTSI 268
+E+D + + + EI+ LE+ + + + + + + Q +
Sbjct: 5 KELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLL 64
Query: 269 AEVHESLKEELSLTSEEISVHLSRAIDSFQSIVDVRIAKVTEKTTRIVQESAQTISSKID 328
+++ L + +I L+ + ++++ + + + Q +
Sbjct: 65 KKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVE---------WKRRQQSACIGG 115
Query: 329 QLLEVLHSTSIVITKDFDNRIESLSNTLNNSGRSLANQVGNYTLMLGNNTDKVSIALKEQ 388
L +++++ + S + + Q+ + T + + +
Sbjct: 116 PPNACL------------DQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHD-PITKN 162
Query: 389 SQQFMQAFTSHI--CEMSNFFSEKQKSITVTLNDVLQSLRISLQEKEDSFCSNLKSTTDN 446
Q S S+F E+Q + L + L+ N
Sbjct: 163 KQVLWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYN 222
Query: 447 TLREVDNRTNTLE-NRITAFLKEIVETFNNSITDFSSFYKDNLSEFESNLQ 496
+V + E N + F K + + + + +L+ +LQ
Sbjct: 223 LKVKVLFDKDVNERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQ 273
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand
binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP:
a.123.1.1
Length = 279
Score = 29.7 bits (66), Expect = 5.9
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 1745 LGEDDIFSKRLYTIKGQKVFLNLQEQYKADSALRNAIDRYISNFEEMLSEIA 1796
LG D F +R ++ Q++FLN Y +SA++ + + F+ +LSE++
Sbjct: 117 LGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVS---AIFDRILSELS 165
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding
protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP:
a.22.1.2
Length = 154
Score = 29.8 bits (67), Expect = 5.9
Identities = 18/139 (12%), Positives = 47/139 (33%), Gaps = 15/139 (10%)
Query: 291 SRAIDSFQSIVDVRIAKVTEKTTRIVQESAQTISSKIDQLLEVLHSTSIVITKDFDNRIE 350
A D+ V V ++ S + + + L + + +D+D +
Sbjct: 25 QDAKDTIYDFVPTMAEYVANAAKSVLDASGKK-TLMEEHLKALADVLMVEGVEDYDGELF 83
Query: 351 SLSNTLNNSGRSLANQVGNYTLMLGNNTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEK 410
+ R + + G ++ S + + + T + E + ++++
Sbjct: 84 GRATV-----RRILKRAGI---------ERASSDAVDLYNKLICRATEELGEKAAEYADE 129
Query: 411 QKSITVTLNDVLQSLRISL 429
TV DV +++ S+
Sbjct: 130 DGRKTVQGEDVEKAITYSM 148
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, alternative splicing, amyloid,
amyloidosis, blood coagulation, coiled coil; HET: NAG
NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 29.8 bits (66), Expect = 6.3
Identities = 22/185 (11%), Positives = 50/185 (27%), Gaps = 13/185 (7%)
Query: 198 SAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTKSEMRIDNITQ---NLKQER 254
A R ++ E + + + ++ + E + + +KQ
Sbjct: 2 VATRDNCCILDERFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLI 61
Query: 255 EAIINHGTQLCTSIAEVHESLKEELSLTSEEISVHLSRAIDSFQSIVDVRIAKVTEKTTR 314
+AI +S + ++ + EEI +I + S + +
Sbjct: 62 KAIQLTYNPDESSKPNMIDAATLKSRKMLEEIM-KYEASILTHDSSIRYLQEIYNSNNQK 120
Query: 315 IVQESAQTISSKIDQLLEVLHSTSIVITKDFDNRIESLSNTLNNSGRSLANQVGNYTLML 374
I + K+ QL + D + + N + G Y +
Sbjct: 121 I-----VNLKEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIANKGAKQ----SGLYFIKP 171
Query: 375 GNNTD 379
Sbjct: 172 LKANQ 176
>1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP binding,
formate binding, monovalent cation binding, ligase;
2.50A {Moorella thermoacetica} SCOP: c.37.1.10 PDB:
1fpm_A 1fp7_A
Length = 557
Score = 29.6 bits (67), Expect = 6.8
Identities = 34/154 (22%), Positives = 51/154 (33%), Gaps = 37/154 (24%)
Query: 753 ELLHSGSANIESELSAISK-------AMNKSIDDVETISTALKERCQELGSDLVNHSDKV 805
E L G AN+E + I K A+N D E L E C + G+++ K
Sbjct: 354 EALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSWAK- 412
Query: 806 LSSLKQAQELLCTTFAQRNDSFVNALADNQSKFENNLVNQSHLLLDKLSSDIQKLTDIAY 865
+ EL + L S F H+L + S K+ IA
Sbjct: 413 --GGEGGLELA--------RKVLQTLESRPSNF--------HVLYNLDLSIKDKIAKIA- 453
Query: 866 SKAIDVANSLTEIQGNVGVTLENHSQAMLEKISA 899
TEI G GV + +++ +
Sbjct: 454 ----------TEIYGADGVNYTAEADKAIQRYES 477
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A
{Vibrio vulnificus}
Length = 648
Score = 29.6 bits (66), Expect = 7.0
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 1157 NKFIETSRVLEQREEKFHSALDSF--SDNISRILLDVDHTISSHTNESRSLIEQRI--HE 1212
N F +T V+ ++ +D D + ++ V + SL+ QR+ E
Sbjct: 560 NLFGDTHSVVVNVGDQGEINIDFINEGDTVEDMMRYVHIDVDQIRKNYHSLVSQRVDQEE 619
Query: 1213 VKDVLSNLDRALESYGSTVFKQFKE 1237
+ +L+ L++ L Y T + F E
Sbjct: 620 QQQILAELEQGLSGY--TYLEDFLE 642
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport,
nuclear pore complex, nucleus, phosphoprotein, protein
transport; 3.20A {Saccharomyces cerevisiae}
Length = 525
Score = 29.5 bits (66), Expect = 7.1
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 20/100 (20%)
Query: 780 VETISTALKERCQELGSDLVNHSD----KVLSSLKQAQELLCTTFAQRNDSFVNALADNQ 835
+E +TAL+ERC S SD + + L++A+E+ + N NA
Sbjct: 4 IEYTATALQERCGSFCS----ASDILGFRAIEHLRRAKEIGLRNYDSLNYHLKNAT---- 55
Query: 836 SKFENNLVNQ--SHLLLDKLSSDIQKLTDI-AYSKAIDVA 872
L+ Q L ++KL + + + Y K+I+
Sbjct: 56 -----ALLEQIVDDLSIEKLKEAVSMMLSVNYYPKSIEFL 90
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex,
ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei}
SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A
2gc5_A* 2gc6_A* 2gcb_A
Length = 428
Score = 29.6 bits (65), Expect = 7.1
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 8/105 (7%)
Query: 1547 CSTIPNIENIFSTLEEKSDQSMQVFLDSLNNK-VDSFTQKLSKTSDDIALTSRRIAEDLN 1605
I + + L++ Q + V L +K + +L+ + L +
Sbjct: 315 AHNPDGINGLITALKQLFSQPITVIAGILADKDYAAMADRLTAAFSTVYLV------PVP 368
Query: 1606 NSRDILKRDSVSLAKEAKESADTIRSAIEEQINTLKDFQKLITDS 1650
+ L E + D+ + A+ +N + D +IT S
Sbjct: 369 GTPRALPEAGYEALHEGR-LKDSWQEALAASLNDVPDQPIVITGS 412
>2w2d_B Bontoxilysin-A, botulinum neurotoxin A heavy chain;
metalloprotease, membrane domain, protein engineering,
metal-binding, transmembrane; 2.59A {Clostridium
botulinum}
Length = 431
Score = 29.5 bits (66), Expect = 7.2
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 13/116 (11%)
Query: 438 SNLKSTTDNTLREVDNRTNTLENRITAFLKE---------IVETFNNSITDFSSFYKDNL 488
+N+ D+ +++ N I FL + ++ + DF + KD L
Sbjct: 314 NNINFNIDDLSSKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLEDFDASLKDAL 373
Query: 489 SEF----ESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDILS 540
++ L G +D+L+ ++ LS L T ++I++
Sbjct: 374 LKYIYDNRGTLIGQVDRLKDKVNNTLSTDIPFQLSKYVDNQRLLSTFTEYIKNIIN 429
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 29.1 bits (64), Expect = 8.4
Identities = 7/50 (14%), Positives = 20/50 (40%)
Query: 1707 SHIDISDKDSLSSIDSLVENISKFIDYDAFVQLWKSYTLGEDDIFSKRLY 1756
+ + + +S D++ N + + FV + + + D +K +
Sbjct: 121 GMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFFMNDGDSTNKVFW 170
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome
condensation, condensin, non-SMC subunit, kleisin,
calcium, cell cycle, cell division; 2.90A {Escherichia
coli}
Length = 440
Score = 29.0 bits (65), Expect = 9.3
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 9/114 (7%)
Query: 728 HVSGILKNSTQHIDDLFSNNAKRMEELLHSGSANIESELSAISKAMNKSIDDVETISTAL 787
+V LK S I D + M+E +I L+ K +I E + +
Sbjct: 155 NVYAPLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLN---KDWRAAISSCELLLSET 211
Query: 788 KERCQELGSDLVNHSDKVLSSLKQAQELLCTTFAQRND-SFV-NALADNQSKFE 839
+EL L DK+ ++L + Q+ +D FV + D QSK +
Sbjct: 212 SGTLRELQDTLEAAGDKLQANLLRIQD----ATMTHDDLHFVDRLVFDLQSKLD 261
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription,
resistance, antibiotic; 2.90A {Streptomyces lividans}
Length = 108
Score = 29.2 bits (65), Expect = 9.6
Identities = 9/45 (20%), Positives = 24/45 (53%)
Query: 1182 DNISRILLDVDHTISSHTNESRSLIEQRIHEVKDVLSNLDRALES 1226
D ++ +L D +H L+ RI +++ + + +++A+E+
Sbjct: 62 DEVAALLDDPAADPRAHLRRQHELLSARIGKLQKMAAAVEQAMEA 106
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.311 0.126 0.328
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 13,372,042
Number of extensions: 603967
Number of successful extensions: 1996
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1966
Number of HSP's successfully gapped: 164
Length of query: 1828
Length of database: 5,693,230
Length adjustment: 106
Effective length of query: 1722
Effective length of database: 3,123,366
Effective search space: 5378436252
Effective search space used: 5378436252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (28.9 bits)