BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer
[Candidatus Liberibacter asiaticus str. psy62]
(1828 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
psy62]
Length = 1828
Score = 3667 bits (9508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1828/1828 (100%), Positives = 1828/1828 (100%)
Query: 1 MSNKKENKATYRDSLKEFEEQSTSDSHENKKRHHSRKKHKYSRRDDSIESKDRQQTTLSK 60
MSNKKENKATYRDSLKEFEEQSTSDSHENKKRHHSRKKHKYSRRDDSIESKDRQQTTLSK
Sbjct: 1 MSNKKENKATYRDSLKEFEEQSTSDSHENKKRHHSRKKHKYSRRDDSIESKDRQQTTLSK 60
Query: 61 NFKQASNKQTYSGFYPANDLDNGGITHILQNIGKNSLNIALRNAFMSSLIWLACELGFLI 120
NFKQASNKQTYSGFYPANDLDNGGITHILQNIGKNSLNIALRNAFMSSLIWLACELGFLI
Sbjct: 61 NFKQASNKQTYSGFYPANDLDNGGITHILQNIGKNSLNIALRNAFMSSLIWLACELGFLI 120
Query: 121 KFYTNSPMDSFYDFAMRPEVITLFLVVSVVPILLFFSFFIMISRARDMHDASQSIAGIAL 180
KFYTNSPMDSFYDFAMRPEVITLFLVVSVVPILLFFSFFIMISRARDMHDASQSIAGIAL
Sbjct: 121 KFYTNSPMDSFYDFAMRPEVITLFLVVSVVPILLFFSFFIMISRARDMHDASQSIAGIAL 180
Query: 181 RLIDPEEYSSEKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTKSE 240
RLIDPEEYSSEKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTKSE
Sbjct: 181 RLIDPEEYSSEKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTKSE 240
Query: 241 MRIDNITQNLKQEREAIINHGTQLCTSIAEVHESLKEELSLTSEEISVHLSRAIDSFQSI 300
MRIDNITQNLKQEREAIINHGTQLCTSIAEVHESLKEELSLTSEEISVHLSRAIDSFQSI
Sbjct: 241 MRIDNITQNLKQEREAIINHGTQLCTSIAEVHESLKEELSLTSEEISVHLSRAIDSFQSI 300
Query: 301 VDVRIAKVTEKTTRIVQESAQTISSKIDQLLEVLHSTSIVITKDFDNRIESLSNTLNNSG 360
VDVRIAKVTEKTTRIVQESAQTISSKIDQLLEVLHSTSIVITKDFDNRIESLSNTLNNSG
Sbjct: 301 VDVRIAKVTEKTTRIVQESAQTISSKIDQLLEVLHSTSIVITKDFDNRIESLSNTLNNSG 360
Query: 361 RSLANQVGNYTLMLGNNTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLND 420
RSLANQVGNYTLMLGNNTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLND
Sbjct: 361 RSLANQVGNYTLMLGNNTDKVSIALKEQSQQFMQAFTSHICEMSNFFSEKQKSITVTLND 420
Query: 421 VLQSLRISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSITDF 480
VLQSLRISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSITDF
Sbjct: 421 VLQSLRISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLENRITAFLKEIVETFNNSITDF 480
Query: 481 SSFYKDNLSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDILS 540
SSFYKDNLSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDILS
Sbjct: 481 SSFYKDNLSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNIQTIGSNLDKKTLLFEDILS 540
Query: 541 KKQNNISQITSMNTERLENTLTNSINSLKDMLEEKRQRIDSDIGKKSEELCSSFNSSYQK 600
KKQNNISQITSMNTERLENTLTNSINSLKDMLEEKRQRIDSDIGKKSEELCSSFNSSYQK
Sbjct: 541 KKQNNISQITSMNTERLENTLTNSINSLKDMLEEKRQRIDSDIGKKSEELCSSFNSSYQK 600
Query: 601 VSNVISDREKLFSNSLARVQSHFEETIAGHPQSIVDSISNSTNNLYDKIMVLAAALSESQ 660
VSNVISDREKLFSNSLARVQSHFEETIAGHPQSIVDSISNSTNNLYDKIMVLAAALSESQ
Sbjct: 601 VSNVISDREKLFSNSLARVQSHFEETIAGHPQSIVDSISNSTNNLYDKIMVLAAALSESQ 660
Query: 661 KSLDNSLKAHATDVVHKITNAENQLVNRFDESSKNIICSYNSSNNKLETIFQKHLHSFND 720
KSLDNSLKAHATDVVHKITNAENQLVNRFDESSKNIICSYNSSNNKLETIFQKHLHSFND
Sbjct: 661 KSLDNSLKAHATDVVHKITNAENQLVNRFDESSKNIICSYNSSNNKLETIFQKHLHSFND 720
Query: 721 TFNNKSDHVSGILKNSTQHIDDLFSNNAKRMEELLHSGSANIESELSAISKAMNKSIDDV 780
TFNNKSDHVSGILKNSTQHIDDLFSNNAKRMEELLHSGSANIESELSAISKAMNKSIDDV
Sbjct: 721 TFNNKSDHVSGILKNSTQHIDDLFSNNAKRMEELLHSGSANIESELSAISKAMNKSIDDV 780
Query: 781 ETISTALKERCQELGSDLVNHSDKVLSSLKQAQELLCTTFAQRNDSFVNALADNQSKFEN 840
ETISTALKERCQELGSDLVNHSDKVLSSLKQAQELLCTTFAQRNDSFVNALADNQSKFEN
Sbjct: 781 ETISTALKERCQELGSDLVNHSDKVLSSLKQAQELLCTTFAQRNDSFVNALADNQSKFEN 840
Query: 841 NLVNQSHLLLDKLSSDIQKLTDIAYSKAIDVANSLTEIQGNVGVTLENHSQAMLEKISAS 900
NLVNQSHLLLDKLSSDIQKLTDIAYSKAIDVANSLTEIQGNVGVTLENHSQAMLEKISAS
Sbjct: 841 NLVNQSHLLLDKLSSDIQKLTDIAYSKAIDVANSLTEIQGNVGVTLENHSQAMLEKISAS 900
Query: 901 NTLVAKTFEECMSNILLSYDENRQTLDKKLSDHIDVLRQNLAGSENKIDGAIGSASQFIR 960
NTLVAKTFEECMSNILLSYDENRQTLDKKLSDHIDVLRQNLAGSENKIDGAIGSASQFIR
Sbjct: 901 NTLVAKTFEECMSNILLSYDENRQTLDKKLSDHIDVLRQNLAGSENKIDGAIGSASQFIR 960
Query: 961 DILDENSSRIESLLSCSNNSVNSTLLRSHQKFDRLLQEKSDELIQLLDNKASCLSTAVST 1020
DILDENSSRIESLLSCSNNSVNSTLLRSHQKFDRLLQEKSDELIQLLDNKASCLSTAVST
Sbjct: 961 DILDENSSRIESLLSCSNNSVNSTLLRSHQKFDRLLQEKSDELIQLLDNKASCLSTAVST 1020
Query: 1021 QTINLENNLKEQEKSLSRVVDTSASSFKYLSDSIQTLAQELVSVIGSMSQSTTDISGKLE 1080
QTINLENNLKEQEKSLSRVVDTSASSFKYLSDSIQTLAQELVSVIGSMSQSTTDISGKLE
Sbjct: 1021 QTINLENNLKEQEKSLSRVVDTSASSFKYLSDSIQTLAQELVSVIGSMSQSTTDISGKLE 1080
Query: 1081 ISLDSVNQKIQKCREFFGDNIVAFMDEISKVMEISEKRISQRTQEISQQLLQNNDVITNQ 1140
ISLDSVNQKIQKCREFFGDNIVAFMDEISKVMEISEKRISQRTQEISQQLLQNNDVITNQ
Sbjct: 1081 ISLDSVNQKIQKCREFFGDNIVAFMDEISKVMEISEKRISQRTQEISQQLLQNNDVITNQ 1140
Query: 1141 IIDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALDSFSDNISRILLDVDHTISSHTN 1200
IIDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALDSFSDNISRILLDVDHTISSHTN
Sbjct: 1141 IIDSTSRVRGEIVDISNKFIETSRVLEQREEKFHSALDSFSDNISRILLDVDHTISSHTN 1200
Query: 1201 ESRSLIEQRIHEVKDVLSNLDRALESYGSTVFKQFKEYVQCFETNMENMESLFDKNNDSM 1260
ESRSLIEQRIHEVKDVLSNLDRALESYGSTVFKQFKEYVQCFETNMENMESLFDKNNDSM
Sbjct: 1201 ESRSLIEQRIHEVKDVLSNLDRALESYGSTVFKQFKEYVQCFETNMENMESLFDKNNDSM 1260
Query: 1261 LLSFKERSNILDNILSQRSMEISDSISGAFHKEGNAVVNVIDQQIYNAANALKKLEALLI 1320
LLSFKERSNILDNILSQRSMEISDSISGAFHKEGNAVVNVIDQQIYNAANALKKLEALLI
Sbjct: 1261 LLSFKERSNILDNILSQRSMEISDSISGAFHKEGNAVVNVIDQQIYNAANALKKLEALLI 1320
Query: 1321 SDVEKITNRITDSSQDVTTIISDATDSLNKVDERLHQTTNRITETTGHIDTVLAESSKLF 1380
SDVEKITNRITDSSQDVTTIISDATDSLNKVDERLHQTTNRITETTGHIDTVLAESSKLF
Sbjct: 1321 SDVEKITNRITDSSQDVTTIISDATDSLNKVDERLHQTTNRITETTGHIDTVLAESSKLF 1380
Query: 1381 EKKIKDLGEISRVSLLQMSEIVSKFDKNSQILIKSHDSLMKAQSETKLSLDKDANNLVDL 1440
EKKIKDLGEISRVSLLQMSEIVSKFDKNSQILIKSHDSLMKAQSETKLSLDKDANNLVDL
Sbjct: 1381 EKKIKDLGEISRVSLLQMSEIVSKFDKNSQILIKSHDSLMKAQSETKLSLDKDANNLVDL 1440
Query: 1441 TSRLVSKSSEAQKFVMSILVDVKKIVEQADFLSDTVVKNMTDSIQSSFIKIDGTLSNIET 1500
TSRLVSKSSEAQKFVMSILVDVKKIVEQADFLSDTVVKNMTDSIQSSFIKIDGTLSNIET
Sbjct: 1441 TSRLVSKSSEAQKFVMSILVDVKKIVEQADFLSDTVVKNMTDSIQSSFIKIDGTLSNIET 1500
Query: 1501 RSRDTVRLIDHNLADIGNKTVKTIDSNFVTLKEKSYDLSNHMRQKICSTIPNIENIFSTL 1560
RSRDTVRLIDHNLADIGNKTVKTIDSNFVTLKEKSYDLSNHMRQKICSTIPNIENIFSTL
Sbjct: 1501 RSRDTVRLIDHNLADIGNKTVKTIDSNFVTLKEKSYDLSNHMRQKICSTIPNIENIFSTL 1560
Query: 1561 EEKSDQSMQVFLDSLNNKVDSFTQKLSKTSDDIALTSRRIAEDLNNSRDILKRDSVSLAK 1620
EEKSDQSMQVFLDSLNNKVDSFTQKLSKTSDDIALTSRRIAEDLNNSRDILKRDSVSLAK
Sbjct: 1561 EEKSDQSMQVFLDSLNNKVDSFTQKLSKTSDDIALTSRRIAEDLNNSRDILKRDSVSLAK 1620
Query: 1621 EAKESADTIRSAIEEQINTLKDFQKLITDSVKNNAASYNKGLHSDEYNISQVDKRPSGKK 1680
EAKESADTIRSAIEEQINTLKDFQKLITDSVKNNAASYNKGLHSDEYNISQVDKRPSGKK
Sbjct: 1621 EAKESADTIRSAIEEQINTLKDFQKLITDSVKNNAASYNKGLHSDEYNISQVDKRPSGKK 1680
Query: 1681 TKNNHAIKEWFNKILSSSTHSKGKSSSHIDISDKDSLSSIDSLVENISKFIDYDAFVQLW 1740
TKNNHAIKEWFNKILSSSTHSKGKSSSHIDISDKDSLSSIDSLVENISKFIDYDAFVQLW
Sbjct: 1681 TKNNHAIKEWFNKILSSSTHSKGKSSSHIDISDKDSLSSIDSLVENISKFIDYDAFVQLW 1740
Query: 1741 KSYTLGEDDIFSKRLYTIKGQKVFLNLQEQYKADSALRNAIDRYISNFEEMLSEIAQSND 1800
KSYTLGEDDIFSKRLYTIKGQKVFLNLQEQYKADSALRNAIDRYISNFEEMLSEIAQSND
Sbjct: 1741 KSYTLGEDDIFSKRLYTIKGQKVFLNLQEQYKADSALRNAIDRYISNFEEMLSEIAQSND 1800
Query: 1801 DSPLVQEHIMSNYGKVYTMLVHASGRTL 1828
DSPLVQEHIMSNYGKVYTMLVHASGRTL
Sbjct: 1801 DSPLVQEHIMSNYGKVYTMLVHASGRTL 1828
>gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 452
Score = 32.3 bits (72), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 27/244 (11%)
Query: 1340 IISDATDSLNKVDERLHQTTNRITETTGHIDTVLAESSKLFEKKIKDLGEISRVSLLQMS 1399
+I+ +N T+ +I++++ HI ++ K I ++ IS V +S
Sbjct: 136 MITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETISTVLANNIS 195
Query: 1400 EIVSKFDKNSQILIKSHDSLMKAQSETKL--SLDKDANNLVDLTSRLVSKSSEAQKFVMS 1457
I K +Q+ S DS + T L SLDK +DL + + + +
Sbjct: 196 HI-DKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIK-AIDL--------QKVNQILEN 245
Query: 1458 ILVDVKKIVEQADFLSDTV--VKNMTDSIQSSFIKIDGTLSNIETR--SRDTVRLIDHNL 1513
I V V+ +D + +TV V+ T + Q KID LS+ ++ S++T ++ N+
Sbjct: 246 IQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAFLE-NI 304
Query: 1514 ADIGNKTVKTIDSNFVTLKEKSYDLSNHMRQKICSTIPNIENIFSTLEEKSDQSMQVFLD 1573
AD + + S+ ++E + RQKI STI IENI S L + S Q +
Sbjct: 305 AD----STSNMRSSISAIREIT-----DQRQKIISTINTIENITSNLND-SSQKFAELMS 354
Query: 1574 SLNN 1577
+NN
Sbjct: 355 KINN 358
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 742 DLFSNNAKRMEELLHSGSANIESELSAISKAMNKSIDDVETISTALKERCQELGSDLVNH 801
+ F +NA+ + + S +I+ + I K + +I ++ETIST L ++ ++H
Sbjct: 145 NYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETISTVL--------ANNISH 196
Query: 802 SDKVL 806
DK++
Sbjct: 197 IDKMM 201
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 75/148 (50%), Gaps = 19/148 (12%)
Query: 417 TLNDVLQSL-----RISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLEN--RITAFLKEI 469
T+ D++ SL I LQ K + N++ +++N ++ D NT+ + T +E+
Sbjct: 219 TITDLITSLDKMIKAIDLQ-KVNQILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEV 277
Query: 470 VETFNNSITDFSSFYK--------DNLSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNI 521
+ ++ ++DFSS K +N+++ SN++ +I ++ + + + I
Sbjct: 278 GQKIDHLLSDFSSKMKSKETSAFLENIADSTSNMRSSISAIREITDQRQKIISTI--NTI 335
Query: 522 QTIGSNLDKKTLLFEDILSKKQNNISQI 549
+ I SNL+ + F +++SK NNIS +
Sbjct: 336 ENITSNLNDSSQKFAELMSKI-NNISAL 362
>gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 673
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 37/225 (16%)
Query: 1055 QTLAQELVSVIGSMSQSTTDISG-KLEISLDSVNQKIQK---CREFFGDNIVAFMDEISK 1110
+ L+QE I + S I+G E+S ++N IQ+ C N+V D+ +
Sbjct: 47 KPLSQEQKEKIKILWSSLRKIAGSNEEVSDPNLNSPIQREDDC------NVVRTNDDTKQ 100
Query: 1111 VMEISEKRISQR--TQEISQQLLQNNDVITNQIIDSTSRVRGEIVDISNKFIETSRVLEQ 1168
+ + K++S Q I + QN + N +S + G +
Sbjct: 101 IFNLLRKKLSNPHLQQHIESKTEQNGGIDPNLQSESLPTIPGTAI--------------- 145
Query: 1169 REEK----FHSALDSFSDNISRI--LLDVDHTISSHTNESRSL--IEQRIHE--VKDVLS 1218
RE+ FHS + S +I+ + ++ + SH+ + L +E E ++ V +
Sbjct: 146 REDDDIDIFHSDMAKLSKSITELCRIISIPGIKKSHSQLEKILSKMENIAKECSLQSVEN 205
Query: 1219 NLDRALESYGSTVFKQFKEYVQCFETNMENMESLFDKNNDSMLLS 1263
N AL+ + FK E + M M+ FDKNN+ S
Sbjct: 206 NWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTFDKNNNGFAAS 250
>gi|254781130|ref|YP_003065543.1| hypothetical protein CLIBASIA_05160 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 378
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 191 EKMQSISSAVRKEIVLMTEEIDRAISRASELEKTVRSEIEVLENNYTK-SEMRIDNITQN 249
+K+ SSA +EI+ + ID S ++ +R I ENN + +E+ +D I
Sbjct: 265 KKVHGESSASAREIIEQLKFIDFNYLPESGMDSELRYLIGFSENNLKEINEVFVDTIGGY 324
Query: 250 LKQEREAIINHGTQLCTSIAEVHESLKE 277
L II H L +I E+ + +KE
Sbjct: 325 LAPNPSVIIPH---LAKAIQELLQEVKE 349
>gi|255764487|ref|YP_003065115.2| heat shock protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 219
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 1172 KFHSALDSFSDNISRILLDVDHTISSHTNESRSLIEQRIHEVKDVLSNLDRALESYGSTV 1231
KF + S SDN+SR L +++ +S S+++ I ++ + LE YG
Sbjct: 75 KFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYG--- 131
Query: 1232 FKQFKEYVQCFETNMENMESLFDKNNDSM 1260
K+ Q F NM +++F++ +D++
Sbjct: 132 VKKIDAKDQKFNPNMH--QAMFEEPHDTV 158
>gi|254780373|ref|YP_003064786.1| flagellar basal body-associated protein FliL [Candidatus Liberibacter
asiaticus str. psy62]
Length = 172
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 1168 QREEKFHS-ALDSFSDNISRILLDVDHTISSHTNESRSLIEQRIHEVKDVLSNLD 1221
Q+EEK+ L++F DN R S HT ++ SL + +I ++ +++N D
Sbjct: 48 QKEEKYQKFILNNFYDNSVR---------SVHTGDTISLKKLQIFSLQPIITNFD 93
>gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62]
Length = 562
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 868 AIDVANSLTEIQGNVGVTLENHSQAML 894
I N + I+GN+ + L NHS+AML
Sbjct: 376 GIVAENIQSRIRGNILMALSNHSKAML 402
>gi|254780350|ref|YP_003064763.1| hypothetical protein CLIBASIA_01175 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 431
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 1153 VDISNKFIETSRVLEQREEKFHSAL-DSFSDNISRILLDVDHTISSHTNESRSLIEQRIH 1211
+ + K I S + E E +HS + D F + ++R+ + +D I + E+ + E+ I
Sbjct: 24 LSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIA 83
Query: 1212 EVKDVLS 1218
+D+LS
Sbjct: 84 FYQDILS 90
>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
Length = 806
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 1110 KVMEISEKRISQRTQEISQQLLQNNDVITNQIIDSTSRVRGEIVDISNKFIETSRVLEQR 1169
+++ S+ ++Q T S +++QNN ++ S ++GEIV++ + T LE
Sbjct: 313 EILSTSQSPVNQMT--FSPKVMQNNACTLKSVL-SDFGIQGEIVNVRPGPVITLYELEPA 369
Query: 1170 EEKFHSALDSFSDNISR 1186
S + SD+I+R
Sbjct: 370 PGIKSSRIIGLSDDIAR 386
>gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B' [Candidatus Liberibacter asiaticus
str. psy62]
Length = 176
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 22/85 (25%)
Query: 606 SDREKLFS--NSLARVQSHFEETIA---GHPQSIVDSISNSTNNLYDKIMVLAAALSESQ 660
SD+EK+ S + + S +EE++A H + I+D V+AAA +
Sbjct: 60 SDQEKMDSAKREVESMISSYEESLAIARAHAKEIIDK-------------VVAAA----E 102
Query: 661 KSLDNSLKAHATDVVHKITNAENQL 685
++L+ + D++HK++NA+N++
Sbjct: 103 QNLEFQREVFEKDLLHKLSNAQNEI 127
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.311 0.126 0.328
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,070,135
Number of Sequences: 1233
Number of extensions: 44649
Number of successful extensions: 329
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 57
length of query: 1828
length of database: 328,796
effective HSP length: 87
effective length of query: 1741
effective length of database: 221,525
effective search space: 385675025
effective search space used: 385675025
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)