HHsearch alignment for GI: 254781031 and conserved domain: COG0482

>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=99.34  E-value=8.4e-12  Score=92.24  Aligned_cols=192  Identities=16%  Similarity=0.078  Sum_probs=105.8

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf             59948999809656999999999749839999976778877727999999999999988875203561587501103224
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS   86 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (240)
T Consensus         2 ~~~kV~v~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~~~~~~~C---~s~~d~~da~~va~~LGIp~~~vdf~~--~y~   76 (356)
T COG0482           2 KKKKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDEDGGGGC---CSEEDLRDAERVADQLGIPLYVVDFEK--EFW   76 (356)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCC---CCHHHHHHHHHHHHHHCCCEEEECHHH--HHH
T ss_conf             876799990577789999999997697499999996414788867---725678999999998099559984689--988


Q ss_pred             CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC---CCCCCHHHHHHHHHHH--HHC
Q ss_conf             44332220110001233101111111223337777774339936511454444345---5544302477777677--530
Q gi|254781031|r   87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSG---YPDCRHDTIRAIETAI--NLG  161 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~  161 (240)
T Consensus        77 ~~V~~~f~~~Y~~G~TPNPci~CN~~-iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~~  155 (356)
T COG0482          77 NKVFEYFLAEYKAGKTPNPCILCNKE-IKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYALS  155 (356)
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHCCHH-HHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHEECCCC
T ss_conf             88888778998579999965104878-89999999999759985787446765437760001467874203000201268


Q ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCC
Q ss_conf             643216775313898899999999828200014325537216288
Q gi|254781031|r  162 MESHVTVHTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLG  206 (240)
Q Consensus       162 ~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~  206 (240)
T Consensus       156 ~~ql~~~lFPlG~l~K~evR~iA~~~gL~~a~K--kdS~~ICFi~  198 (356)
T COG0482         156 QEQLERLLFPLGDLEKLEVRPIAAEKGLPTAKK--KDSQGICFIG  198 (356)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC--CCCCCCEECC
T ss_conf             877753225677777789999999759976676--6677622137