HHsearch alignment for GI: 254781031 and conserved domain: COG0482
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=99.34 E-value=8.4e-12 Score=92.24 Aligned_cols=192 Identities=16% Similarity=0.078 Sum_probs=105.8
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf 59948999809656999999999749839999976778877727999999999999988875203561587501103224
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS 86 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (240)
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~~~~~~~C---~s~~d~~da~~va~~LGIp~~~vdf~~--~y~ 76 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDEDGGGGC---CSEEDLRDAERVADQLGIPLYVVDFEK--EFW 76 (356)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCC---CCHHHHHHHHHHHHHHCCCEEEECHHH--HHH
T ss_conf 876799990577789999999997697499999996414788867---725678999999998099559984689--988
Q ss_pred CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC---CCCCCHHHHHHHHHHH--HHC
Q ss_conf 44332220110001233101111111223337777774339936511454444345---5544302477777677--530
Q gi|254781031|r 87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSG---YPDCRHDTIRAIETAI--NLG 161 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~ 161 (240)
T Consensus 77 ~~V~~~f~~~Y~~G~TPNPci~CN~~-iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~~ 155 (356)
T COG0482 77 NKVFEYFLAEYKAGKTPNPCILCNKE-IKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYALS 155 (356)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHCCHH-HHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHEECCCC
T ss_conf 88888778998579999965104878-89999999999759985787446765437760001467874203000201268
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCC
Q ss_conf 643216775313898899999999828200014325537216288
Q gi|254781031|r 162 MESHVTVHTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLG 206 (240)
Q Consensus 162 ~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~ 206 (240)
T Consensus 156 ~~ql~~~lFPlG~l~K~evR~iA~~~gL~~a~K--kdS~~ICFi~ 198 (356)
T COG0482 156 QEQLERLLFPLGDLEKLEVRPIAAEKGLPTAKK--KDSQGICFIG 198 (356)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC--CCCCCCEECC
T ss_conf 877753225677777789999999759976676--6677622137