HHsearch alignment for GI: 254781031 and conserved domain: PRK00143

>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed.
Probab=99.37  E-value=5.2e-12  Score=93.54  Aligned_cols=171  Identities=16%  Similarity=0.047  Sum_probs=98.7

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf             59948999809656999999999749839999976778877727999999999999988875203561587501103224
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS   86 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (240)
T Consensus         3 sk~rV~VamSGGVDSsVaA~LL~~~Gy~V~Gv~m~~w~~~~~~~--~C~~~~d~~dA~~va~~LgIp~~v~d~~~~--f~   78 (355)
T PRK00143          3 SKKRVVVGMSGGVDSSVAAALLKEQGYDVIGLFMKLWDDDDGSG--GCCAEEDIADARAVADKLGIPLYVVDFAKE--FW   78 (355)
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEECHHHH--HH
T ss_conf             88889999167899999999999779958999998876887778--998578899999999986985799686998--76


Q ss_pred             CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC------------CCCCCHHHHHHH
Q ss_conf             44332220110001233101111111223337777774339936511454444345------------554430247777
Q gi|254781031|r   87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSG------------YPDCRHDTIRAI  154 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~------------~~~~~~~~~~~~  154 (240)
T Consensus        79 ~~Vi~~f~~~Y~~G~TPNPcv~CN~~I-KFg~l~~~A~~lgad~iATGHYAri~~~~~~~~L~r~~D~~KDQSYf-----  152 (355)
T PRK00143         79 DNVFDYFLDEYKAGRTPNPCVLCNKEI-KFKAFLDYALELGADYIATGHYARIRDEDGRYELLRAVDPNKDQSYF-----  152 (355)
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHCCCCC-CHHHHHHHHHHCCCCEECCCCEEEEEECCCEEEEEECCCCCCCCEEE-----
T ss_conf             788999999997699999733408723-39999999987399842335259999159818998678898872057-----


Q ss_pred             HHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             76775306432167753138988999999998282
Q gi|254781031|r  155 ETAINLGMESHVTVHTPLMWLKKYETWKLAQDIGG  189 (240)
Q Consensus       155 ~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~  189 (240)
T Consensus       153 --L~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gL  185 (355)
T PRK00143        153 --LYQLTQEQLAKLLFPLGELTKPEVREIAAEIGL  185 (355)
T ss_pred             --EECCCHHHHHHEECCCCCCCHHHHHHHHHHCCC
T ss_conf             --610579887420758767735899999997589