HHsearch alignment for GI: 254781031 and conserved domain: PRK00143
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed.
Probab=99.37 E-value=5.2e-12 Score=93.54 Aligned_cols=171 Identities=16% Similarity=0.047 Sum_probs=98.7
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf 59948999809656999999999749839999976778877727999999999999988875203561587501103224
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS 86 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (240)
T Consensus 3 sk~rV~VamSGGVDSsVaA~LL~~~Gy~V~Gv~m~~w~~~~~~~--~C~~~~d~~dA~~va~~LgIp~~v~d~~~~--f~ 78 (355)
T PRK00143 3 SKKRVVVGMSGGVDSSVAAALLKEQGYDVIGLFMKLWDDDDGSG--GCCAEEDIADARAVADKLGIPLYVVDFAKE--FW 78 (355)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEECHHHH--HH
T ss_conf 88889999167899999999999779958999998876887778--998578899999999986985799686998--76
Q ss_pred CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC------------CCCCCHHHHHHH
Q ss_conf 44332220110001233101111111223337777774339936511454444345------------554430247777
Q gi|254781031|r 87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSG------------YPDCRHDTIRAI 154 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~------------~~~~~~~~~~~~ 154 (240)
T Consensus 79 ~~Vi~~f~~~Y~~G~TPNPcv~CN~~I-KFg~l~~~A~~lgad~iATGHYAri~~~~~~~~L~r~~D~~KDQSYf----- 152 (355)
T PRK00143 79 DNVFDYFLDEYKAGRTPNPCVLCNKEI-KFKAFLDYALELGADYIATGHYARIRDEDGRYELLRAVDPNKDQSYF----- 152 (355)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHCCCCC-CHHHHHHHHHHCCCCEECCCCEEEEEECCCEEEEEECCCCCCCCEEE-----
T ss_conf 788999999997699999733408723-39999999987399842335259999159818998678898872057-----
Q ss_pred HHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 76775306432167753138988999999998282
Q gi|254781031|r 155 ETAINLGMESHVTVHTPLMWLKKYETWKLAQDIGG 189 (240)
Q Consensus 155 ~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~ 189 (240)
T Consensus 153 --L~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gL 185 (355)
T PRK00143 153 --LYQLTQEQLAKLLFPLGELTKPEVREIAAEIGL 185 (355)
T ss_pred --EECCCHHHHHHEECCCCCCCHHHHHHHHHHCCC
T ss_conf --610579887420758767735899999997589