HHsearch alignment for GI: 254781031 and conserved domain: TIGR00032

>TIGR00032 argG argininosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate , . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process.
Probab=99.16  E-value=5.2e-10  Score=81.13  Aligned_cols=161  Identities=15%  Similarity=0.137  Sum_probs=94.9

Q ss_pred             CEEEEEECCHHHHHHHHHHHHC-CC-EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCC
Q ss_conf             4899980965699999999974-98-399999767788777279999999999999888752035615875011032244
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDR-FD-RVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISH   87 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~-~~-~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (240)
T Consensus         1 KVvLAySGGLDTSv~l~wL~~kyG~~~Via~~~dvGQPDE~d~~~~~~kA~~~GA~~~---------~~iDak--~eFv~   69 (420)
T TIGR00032         1 KVVLAYSGGLDTSVCLKWLEEKYGYEEVIAVTADVGQPDEEDIDAIEEKALKYGAEKH---------YTIDAK--EEFVK   69 (420)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEE---------EEEECH--HHHHH
T ss_conf             9688860702599999998865289860799975679998888889999887367102---------577236--88999


Q ss_pred             C--CCCCCHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             4--332220110001--233101111111223337777774339936511454444345554430247777767753064
Q gi|254781031|r   88 S--SLTKNVAMKIQD--NNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGME  163 (240)
Q Consensus        88 ~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (240)
T Consensus        70 dy~f~aiqanA~Ye~~GG~~Y~L~TaLaRPlIA~~lVe~Ak~~Ga~AvaHGCT------GKGNDQ~RFe~~---~-~~~~  139 (420)
T TIGR00032        70 DYLFAAIQANAVYEGTGGLVYPLSTALARPLIAKKLVEVAKKEGAEAVAHGCT------GKGNDQVRFERS---I-RALN  139 (420)
T ss_pred             HHHHHHHHCCCEECCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC------CCCCCHHHHHHH---H-HHHC
T ss_conf             99888765066031787410347661145799999999984669549870768------777413576588---8-7526


Q ss_pred             CCEEEEEEE--CCCC-----HHHHHHHHHHHCCCH
Q ss_conf             321677531--3898-----899999999828200
Q gi|254781031|r  164 SHVTVHTPL--MWLK-----KYETWKLAQDIGGQD  191 (240)
Q Consensus       164 ~~~~i~~P~--~~~t-----K~eI~~~~~~~~~~~  191 (240)
T Consensus       140 p~LkviaP~R~~~~~e~lgGR~e~~eYa~~~Gip~  174 (420)
T TIGR00032       140 PDLKVIAPWRDLNLTEELGGREEEIEYAAQKGIPV  174 (420)
T ss_pred             CCCEEECCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf             89858747346467764059488999999668887