HHsearch alignment for GI: 254781031 and conserved domain: TIGR02039

>TIGR02039 CysD sulfate adenylyltransferase, small subunit; InterPro: IPR011784 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through reaction of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS). In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids. Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules.; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0019421 sulfate reduction APS pathway.
Probab=98.09  E-value=7.7e-05  Score=49.05  Aligned_cols=159  Identities=18%  Similarity=0.160  Sum_probs=84.5

Q ss_pred             CCHHHCCCCCEEEEEECCHHHHHHHHHHHHCCC----EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             912213599489998096569999999997498----3999997677887772799999999999998887520356158
Q gi|254781031|r    1 MNDIIKKAPSALLLFSGGQDSSTCLSWALDRFD----RVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHI   76 (240)
Q Consensus         1 ~~~~~~~~~~av~l~SGGlDS~~~l~~l~~~~~----~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   76 (240)
T Consensus        12 ~REvaa~F~~PV~LyS~GKDS~VlLHLA~KaF~Pg~~PFplLHvDTgw~--f~---------E~~~fRD~~~~~~~~~L~   80 (295)
T TIGR02039        12 IREVAAEFERPVLLYSIGKDSSVLLHLARKAFYPGRLPFPLLHVDTGWK--FR---------EMIAFRDELVAKYGLELI   80 (295)
T ss_pred             HHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCC--HH---------HHHHHHHHHHHHHCCEEE
T ss_conf             9987630379768986573479999987640588887973577406632--78---------999999999987097688


Q ss_pred             EECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCEEECCCCCCCCC--------------
Q ss_conf             750110322444332220110001233101111111223337777774-33993651145444434--------------
Q gi|254781031|r   77 LPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAY-RLGITNIVIGVCETDYS--------------  141 (240)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~g~~~i~~~~~~~~~~--------------  141 (240)
T Consensus        81 v~~~~~~~~-------------~g~~P~~~~~~~~~~~~~T~~L~~Al~~~~FDAa~gGARRdEE~sRaKERifS~R~~~  147 (295)
T TIGR02039        81 VHSNEEGIA-------------EGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEKSRAKERIFSFRDAF  147 (295)
T ss_pred             EEECHHHHH-------------HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCEEHHCCCC
T ss_conf             850502354-------------1566201012455555631899999873388656316631344301201000100345


Q ss_pred             ---CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf             ---555443024777776775306432167753138988999999998
Q gi|254781031|r  142 ---GYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQD  186 (240)
Q Consensus       142 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~  186 (240)
T Consensus       148 h~WDPk~QRPELW~~YNg~~~--~GE~~RvF-PLSNwTE~DiW~Y~~~  192 (295)
T TIGR02039       148 HQWDPKKQRPELWNLYNGRIS--KGESVRVF-PLSNWTELDIWRYIAA  192 (295)
T ss_pred             CCCCCCCCCHHHHHHCCCCCC--CCCEEEEE-CCCCCCHHHHHHHHHH
T ss_conf             788851257377875052346--88726872-2666504458988743