Query         gi|254781031|ref|YP_003065444.1| exsB protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 240
No_of_seqs    113 out of 2303
Neff          10.1
Searched_HMMs 39220
Date          Mon May 30 03:33:28 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781031.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK11106 queuosine biosynthesi 100.0       0       0  322.1  17.5  211    9-237     2-216 (231)
  2 COG0603 Predicted PP-loop supe 100.0       0       0  308.6  17.0  209    7-237     1-214 (222)
  3 TIGR00364 TIGR00364 exsB prote 100.0       0       0  316.3  10.1  206   11-227     1-227 (227)
  4 cd01995 ExsB ExsB is a transcr 100.0 1.4E-45       0  302.2  16.3  169   10-233     1-169 (169)
  5 pfam06508 ExsB ExsB. This fami  99.9 2.6E-24 6.7E-29  169.8   9.6  133   10-152     1-137 (137)
  6 pfam02568 ThiI Thiamine biosyn  99.7 2.5E-16 6.5E-21  120.3  14.0  166    8-197     3-169 (197)
  7 PRK08349 hypothetical protein;  99.7 1.5E-16 3.8E-21  121.7  12.1  163   10-196     2-165 (198)
  8 cd01712 ThiI ThiI is required   99.7 2.7E-16 6.9E-21  120.1  13.2  164   10-197     1-164 (177)
  9 PRK01565 thiamine biosynthesis  99.7 3.8E-16 9.6E-21  119.2  13.5  170    7-203   175-344 (399)
 10 PRK01269 thiamine biosynthesis  99.7 1.9E-15 4.8E-20  114.9  13.0  164    7-196   176-340 (483)
 11 COG0301 ThiI Thiamine biosynth  99.7 3.3E-15 8.4E-20  113.4  13.8  168    7-203   174-344 (383)
 12 TIGR00342 TIGR00342 thiamine b  99.7 6.1E-16 1.6E-20  117.9   9.5  172    7-207   185-361 (391)
 13 PRK08384 thiamine biosynthesis  99.4   2E-12 5.1E-17   96.1  11.9  132    7-190   178-309 (310)
 14 PRK00143 trmU tRNA (5-methylam  99.4 5.2E-12 1.3E-16   93.5   9.8  171    7-189     3-185 (355)
 15 COG0482 TrmU Predicted tRNA(5-  99.3 8.4E-12 2.1E-16   92.2   9.5  192    7-206     2-198 (356)
 16 PRK05370 argininosuccinate syn  99.3 1.4E-10 3.5E-15   84.7  12.4  166    5-190     8-182 (447)
 17 cd01998 tRNA_Me_trans tRNA met  99.3 1.5E-11 3.9E-16   90.6   7.2  176   10-190     1-182 (349)
 18 pfam03054 tRNA_Me_trans tRNA m  99.3 1.7E-11 4.4E-16   90.3   7.1  170   10-190     2-184 (354)
 19 PRK00509 argininosuccinate syn  99.2 4.2E-10 1.1E-14   81.7  13.4  160    7-190     1-165 (398)
 20 TIGR02432 lysidine_TilS_N tRNA  99.2 1.9E-10 4.9E-15   83.8  11.5  164   10-194     1-185 (204)
 21 PRK13820 argininosuccinate syn  99.2 5.5E-10 1.4E-14   81.0  13.4  158    7-190     2-163 (395)
 22 COG0037 MesJ tRNA(Ile)-lysidin  99.2 4.7E-10 1.2E-14   81.4  12.7  157    8-189    21-186 (298)
 23 pfam01171 ATP_bind_3 PP-loop f  99.2 2.5E-10 6.5E-15   83.0  10.9  151   10-192     1-164 (182)
 24 COG1606 ATP-utilizing enzymes   99.2 2.2E-10 5.7E-15   83.4   9.6  153    2-191    11-166 (269)
 25 TIGR00032 argG argininosuccina  99.2 5.2E-10 1.3E-14   81.1  10.7  161   10-191     1-174 (420)
 26 PRK04527 argininosuccinate syn  99.1   7E-10 1.8E-14   80.3  10.8  156    8-189     3-167 (397)
 27 cd01992 PP-ATPase N-terminal d  99.1 3.9E-10   1E-14   81.9   9.5  151   10-191     1-163 (185)
 28 cd01993 Alpha_ANH_like_II This  99.1 7.9E-10   2E-14   80.0  10.8  159   10-192     1-175 (185)
 29 TIGR00268 TIGR00268 conserved   99.1 8.4E-10 2.2E-14   79.8  10.4  164    2-204     6-176 (263)
 30 pfam00764 Arginosuc_synth Argi  99.1   2E-09 5.1E-14   77.5  11.9  157   12-190     1-159 (389)
 31 COG0137 ArgG Argininosuccinate  99.1 1.3E-09 3.3E-14   78.7  10.7  165    5-192     1-169 (403)
 32 cd01990 Alpha_ANH_like_I This   99.1 1.1E-09 2.7E-14   79.2  10.2  153   11-203     1-156 (202)
 33 TIGR00884 guaA_Cterm GMP synth  99.1 1.6E-09 4.2E-14   78.0  10.7  164    7-192    15-189 (319)
 34 cd01999 Argininosuccinate_Synt  99.1 6.5E-09 1.6E-13   74.3  13.1  157   11-190     1-162 (385)
 35 TIGR00420 trmU tRNA (5-methyla  99.1 1.4E-09 3.6E-14   78.5   9.2  170    9-188     1-198 (394)
 36 PRK10660 tilS tRNA(Ile)-lysidi  99.1 1.7E-09 4.4E-14   77.9   9.6  159    2-194     7-178 (433)
 37 cd01997 GMP_synthase_C The C-t  98.9   2E-08   5E-13   71.3  10.0  161   10-192     1-167 (295)
 38 PRK00919 GMP synthase subunit   98.9 6.8E-09 1.7E-13   74.2   7.2  157    8-192    20-179 (306)
 39 PRK00074 guaA GMP synthase; Re  98.9   6E-08 1.5E-12   68.3  11.5  164    7-192   215-384 (513)
 40 KOG2805 consensus               98.8 7.1E-09 1.8E-13   74.1   6.5  184    4-190     1-192 (377)
 41 PRK10696 C32 tRNA thiolase; Pr  98.7 1.2E-07   3E-12   66.5   9.6  159    2-188    33-204 (311)
 42 COG0519 GuaA GMP synthase, PP-  98.7 2.7E-07   7E-12   64.2  10.5  163    8-192    21-186 (315)
 43 KOG1706 consensus               98.7 2.1E-07 5.4E-12   64.9   9.4   42    4-45      1-42  (412)
 44 pfam01507 PAPS_reduct Phosphoa  98.6   1E-06 2.6E-11   60.7  10.5  152   10-188     1-152 (174)
 45 PRK05253 sulfate adenylyltrans  98.6 1.8E-06 4.6E-11   59.1  11.5  160    1-186    19-199 (300)
 46 PRK12563 sulfate adenylyltrans  98.5 4.8E-06 1.2E-10   56.6  11.9  159    2-186    31-210 (312)
 47 cd01713 PAPS_reductase This do  98.5 2.4E-06   6E-11   58.4   9.9  155   10-188     1-158 (173)
 48 pfam02540 NAD_synthase NAD syn  98.3 9.1E-06 2.3E-10   54.8   9.5  150    7-191    17-170 (243)
 49 cd00553 NAD_synthase NAD+ synt  98.3 6.9E-06 1.8E-10   55.5   8.7  156    7-191    22-179 (248)
 50 COG2117 Predicted subunit of t  98.2 1.1E-05 2.9E-10   54.2   8.1  144   11-187     3-148 (198)
 51 KOG1622 consensus               98.2 6.7E-06 1.7E-10   55.6   6.6   38    8-45    230-269 (552)
 52 PRK06850 hypothetical protein;  98.1 4.9E-05 1.2E-09   50.3  10.4  216   11-236    24-270 (488)
 53 PRK13980 NAD synthetase; Provi  98.1 3.9E-05   1E-09   50.9   9.6  151    7-191    27-179 (264)
 54 cd01986 Alpha_ANH_like Adenine  98.1 9.3E-06 2.4E-10   54.8   6.3   34   11-44      1-34  (103)
 55 TIGR02039 CysD sulfate adenyly  98.1 7.7E-05   2E-09   49.1  10.9  159    1-186    12-192 (295)
 56 TIGR03183 DNA_S_dndC putative   98.0 3.6E-05 9.2E-10   51.1   8.5  170   11-187    16-200 (447)
 57 PRK00876 nadE NAD synthetase;   98.0 2.4E-05   6E-10   52.2   7.4   35    8-42     33-69  (325)
 58 COG0175 CysH 3'-phosphoadenosi  98.0 7.9E-05   2E-09   49.0   9.9  156    7-188    38-193 (261)
 59 PRK13981 NAD synthetase; Provi  98.0 5.3E-05 1.4E-09   50.1   8.8  150    8-186   281-432 (543)
 60 PRK08576 hypothetical protein;  98.0 1.7E-05 4.4E-10   53.1   6.3   51   10-60    237-287 (439)
 61 PRK08557 hypothetical protein;  98.0 1.8E-05 4.7E-10   52.9   5.7   50   10-59    185-234 (420)
 62 PRK13794 hypothetical protein;  97.9 2.3E-05 5.9E-10   52.3   6.0   52    8-59    245-297 (473)
 63 TIGR03573 WbuX N-acetyl sugar   97.9 5.7E-05 1.5E-09   49.9   7.7  110   10-138    61-171 (343)
 64 cd01994 Alpha_ANH_like_IV This  97.9 0.00045 1.1E-08   44.3  12.0  133   10-190     1-139 (194)
 65 cd01991 Asn_Synthase_B_C The C  97.8   5E-05 1.3E-09   50.2   6.3   56    5-60     12-68  (269)
 66 pfam00733 Asn_synthase Asparag  97.8 4.2E-05 1.1E-09   50.7   5.7   54    7-60     16-70  (195)
 67 COG0171 NadE NAD synthase [Coe  97.7 0.00025 6.5E-09   45.8   8.2   38    7-44     24-67  (268)
 68 PRK13795 hypothetical protein;  97.7 0.00015 3.7E-09   47.3   6.6   50    8-57    245-294 (630)
 69 cd01996 Alpha_ANH_like_III Thi  97.7 8.7E-05 2.2E-09   48.7   5.4  114   10-144     3-119 (154)
 70 PRK00768 nadE NAD synthetase;   97.7 0.00029 7.3E-09   45.5   7.8   24  169-192   181-204 (274)
 71 pfam01902 ATP_bind_4 ATP-bindi  97.6  0.0044 1.1E-07   38.2  13.0  128   10-188     2-134 (219)
 72 TIGR01536 asn_synth_AEB aspara  97.6 0.00029 7.4E-09   45.5   6.6  126    4-147   308-453 (646)
 73 PTZ00323 NAD+ synthase; Provis  97.4  0.0011 2.9E-08   41.8   7.8   26  166-191   187-212 (294)
 74 PTZ00077 asparagine synthetase  97.3  0.0012 3.1E-08   41.6   7.5   26    4-30    234-259 (610)
 75 TIGR03108 eps_aminotran_1 exos  97.3  0.0008   2E-08   42.8   6.1   50   10-59    260-310 (628)
 76 COG1365 Predicted ATPase (PP-l  97.2  0.0015 3.9E-08   41.0   6.8  147    9-203    61-210 (255)
 77 TIGR00289 TIGR00289 conserved   97.2  0.0005 1.3E-08   44.0   4.0   31   11-41      3-34  (227)
 78 PRK02628 nadE NAD synthetase;   97.1  0.0037 9.4E-08   38.6   8.1   34    8-41    362-402 (678)
 79 COG2102 Predicted ATPases of P  97.1 0.00079   2E-08   42.8   4.5  128   10-188     2-135 (223)
 80 COG0367 AsnB Asparagine syntha  97.0  0.0023 5.8E-08   39.9   6.4   54    8-61    230-285 (542)
 81 TIGR03104 trio_amidotrans aspa  97.0  0.0012   3E-08   41.7   4.8   33   11-43    263-296 (589)
 82 PRK09431 asnB asparagine synth  96.7  0.0039   1E-07   38.5   5.5   26    5-31    225-250 (555)
 83 cd01984 AANH_like Adenine nucl  96.7  0.0026 6.6E-08   39.6   4.2   31   11-41      1-34  (86)
 84 COG3969 Predicted phosphoadeno  96.5  0.0037 9.5E-08   38.6   4.3   40    6-45     25-70  (407)
 85 PRK02090 phosphoadenosine phos  96.5   0.036 9.1E-07   32.5   9.1  155    7-190    40-194 (243)
 86 KOG0573 consensus               96.2   0.014 3.6E-07   35.0   5.7   60   10-71    252-322 (520)
 87 KOG0571 consensus               95.9    0.01 2.6E-07   35.9   4.0   53    5-60    223-283 (543)
 88 KOG2594 consensus               95.1    0.13 3.2E-06   29.1   7.2  173    3-186    57-260 (396)
 89 TIGR00552 nadE NAD+ synthetase  95.0    0.11 2.7E-06   29.6   6.6  153    7-189    25-188 (286)
 90 KOG2316 consensus               90.6    0.45 1.1E-05   25.7   4.3   32   10-41      2-33  (277)
 91 TIGR00290 MJ0570_dom MJ0570-re  85.8    0.66 1.7E-05   24.7   2.6   33   10-42      2-34  (265)
 92 KOG2840 consensus               79.8     2.1 5.3E-05   21.6   3.2   75    2-84     45-125 (347)
 93 PRK05077 frsA fermentation/res  71.6     3.1 7.8E-05   20.5   2.3   33   10-42    194-230 (414)
 94 TIGR02397 dnaX_nterm DNA polym  71.3     2.1 5.3E-05   21.6   1.4   23  197-226    56-78  (363)
 95 KOG2303 consensus               69.5     2.6 6.5E-05   21.0   1.5   18   11-28    352-369 (706)
 96 PRK12435 ferrochelatase; Provi  69.1     2.4 6.2E-05   21.2   1.3   22    5-26      1-23  (316)
 97 pfam06500 DUF1100 Alpha/beta h  68.0     4.1 0.00011   19.7   2.3   34    9-42    189-226 (411)
 98 cd01524 RHOD_Pyr_redox Member   66.1     9.1 0.00023   17.6   4.2   32    7-38     50-81  (90)
 99 cd01534 4RHOD_Repeat_3 Member   64.0      10 0.00026   17.3   4.0   31    8-38     56-86  (95)
100 pfam10589 NADH_4Fe-4S NADH-ubi  61.2       2 5.2E-05   21.6  -0.3   14  217-230    15-28  (46)
101 PRK05707 DNA polymerase III su  61.1     5.6 0.00014   18.9   1.9   16   10-26     23-40  (328)
102 TIGR00276 TIGR00276 iron-sulfu  60.5     3.5   9E-05   20.1   0.9   11  216-226   172-182 (297)
103 TIGR00692 tdh L-threonine 3-de  60.1     2.2 5.7E-05   21.4  -0.2   20  176-195   214-233 (341)
104 PRK05818 DNA polymerase III su  58.6     5.8 0.00015   18.8   1.7   12    4-15      3-14  (262)
105 cd01523 RHOD_Lact_B Member of   56.6      13 0.00034   16.5   4.7   29    8-36     61-89  (100)
106 COG1751 Uncharacterized conser  56.1      14 0.00035   16.5   4.6   60    9-69     29-88  (186)
107 PRK13596 NADH dehydrogenase I   56.0     3.5 8.9E-05   20.2   0.2   16  216-231   343-358 (426)
108 KOG0795 consensus               55.5     6.3 0.00016   18.6   1.4   80  139-231    78-161 (262)
109 COG1856 Uncharacterized homolo  55.4     5.4 0.00014   19.0   1.1   31    4-35     51-86  (275)
110 KOG0317 consensus               55.1     6.2 0.00016   18.6   1.3   32  195-226   234-267 (293)
111 TIGR00678 holB DNA polymerase   55.1     7.6 0.00019   18.1   1.8   19  170-188   175-193 (216)
112 COG5273 Uncharacterized protei  55.0     3.6 9.1E-05   20.1   0.1   22  201-228   113-136 (309)
113 COG1062 AdhC Zn-dependent alco  52.2     3.1 7.8E-05   20.5  -0.6   29   13-41    191-219 (366)
114 TIGR02055 APS_reductase adenyl  50.7      17 0.00043   15.9   6.0  151   16-188     1-154 (200)
115 pfam04301 DUF452 Protein of un  50.4      17 0.00043   15.9   3.5   36    7-43      9-45  (213)
116 PTZ00304 NADH dehydrogenase (u  49.9     3.8 9.6E-05   20.0  -0.4   12  217-228   366-377 (483)
117 PTZ00082 L-lactate dehydrogena  49.8      17 0.00044   15.9   6.8   38    1-41      1-38  (322)
118 PRK10684 HCP oxidoreductase, N  49.8      17 0.00044   15.9   5.7   38    9-47    112-152 (335)
119 cd01518 RHOD_YceA Member of th  47.7      19 0.00048   15.7   4.3   24   10-33     63-86  (101)
120 PRK07276 DNA polymerase III su  46.5      14 0.00035   16.5   2.0   21    9-30     24-44  (290)
121 COG1150 HdrC Heterodisulfide r  45.8      13 0.00033   16.6   1.8   10  218-227    85-94  (195)
122 COG1894 NuoF NADH:ubiquinone o  45.8     4.4 0.00011   19.6  -0.6   11  217-227   348-358 (424)
123 PRK11278 NADH dehydrogenase I   45.4       5 0.00013   19.2  -0.4   16  216-231   352-367 (448)
124 pfam04396 consensus             45.1      20 0.00052   15.4   4.1   17  120-136    86-102 (149)
125 TIGR02196 GlrX_YruB Glutaredox  43.3      11 0.00028   17.1   1.1   19  221-239    10-28  (79)
126 COG1341 Predicted GTPase or GT  42.5      22 0.00057   15.2   4.1   42    7-48     70-117 (398)
127 PRK09590 celB cellobiose phosp  42.0      23 0.00058   15.1   4.6   34    9-42      2-41  (104)
128 TIGR03030 CelA cellulose synth  41.6      15 0.00037   16.3   1.5   19  215-235   305-323 (713)
129 cd03274 ABC_SMC4_euk Eukaryoti  41.0      22 0.00056   15.2   2.3   11   13-23    126-136 (212)
130 TIGR01389 recQ ATP-dependent D  40.8     7.6 0.00019   18.1  -0.0   36  196-231   364-402 (607)
131 TIGR01472 gmd GDP-mannose 4,6-  40.3      24 0.00062   15.0   3.6   27   13-39      3-31  (365)
132 TIGR01198 pgl 6-phosphoglucono  40.3      11 0.00029   17.0   0.8   41    1-41     20-67  (251)
133 pfam08366 LLGL LLGL2. This dom  40.2      16  0.0004   16.1   1.5   30    7-44     25-54  (105)
134 COG1158 Rho Transcription term  40.2      11 0.00028   17.1   0.7   15  168-182   355-369 (422)
135 pfam08981 consensus             40.2      24 0.00062   14.9   4.8   58    9-67     27-85  (181)
136 cd05565 PTS_IIB_lactose PTS_II  40.2      24 0.00062   14.9   4.3   35   10-44      2-40  (99)
137 KOG1315 consensus               39.4      12  0.0003   16.9   0.8   21  202-228   116-136 (307)
138 TIGR00725 TIGR00725 conserved   39.3      14 0.00037   16.4   1.2   37    3-39     28-66  (176)
139 cd01522 RHOD_1 Member of the R  39.3      25 0.00064   14.9   4.1   14   25-38      6-19  (117)
140 KOG0316 consensus               38.6     3.5   9E-05   20.2  -2.0   30    5-34    107-136 (307)
141 TIGR02108 PQQ_syn_pqqB coenzym  37.6      27 0.00068   14.7   2.5   22   10-31     82-103 (314)
142 COG1600 Uncharacterized Fe-S p  37.5      13 0.00034   16.6   0.8   12  216-227   185-196 (337)
143 PRK00162 glpE thiosulfate sulf  37.0      27  0.0007   14.6   4.6   18   15-32     65-82  (104)
144 PTZ00200 cysteine proteinase p  35.9      19 0.00048   15.6   1.3   12  212-223   250-261 (448)
145 TIGR00888 guaA_Nterm GMP synth  35.8      18 0.00046   15.8   1.2   19    3-22     36-54  (195)
146 TIGR03366 HpnZ_proposed putati  35.6      16 0.00042   16.0   1.0   32    8-40    121-153 (280)
147 PRK13685 hypothetical protein;  34.8      30 0.00075   14.4   4.4   14  174-187   273-286 (326)
148 PRK06305 DNA polymerase III su  34.0      30 0.00078   14.3   5.6   32   28-60     32-63  (462)
149 KOG0272 consensus               33.6      14 0.00035   16.5   0.3   17   14-30    318-334 (459)
150 COG2210 Peroxiredoxin family p  33.0      32 0.00081   14.2   4.4   37    7-43      2-42  (137)
151 KOG1372 consensus               32.7      32 0.00082   14.2   3.9   36    4-39     22-59  (376)
152 KOG0823 consensus               31.6      17 0.00044   15.9   0.6   22    8-29     57-78  (230)
153 pfam01799 Fer2_2 [2Fe-2S] bind  30.9      19 0.00048   15.6   0.7   12  146-157    29-40  (75)
154 KOG1312 consensus               30.5      19 0.00049   15.6   0.7   14  215-228   162-175 (341)
155 PRK09111 DNA polymerase III su  30.3      35  0.0009   14.0   6.2   16   15-30    284-299 (600)
156 KOG0270 consensus               30.2     4.3 0.00011   19.6  -2.7   19   13-31    258-276 (463)
157 TIGR02518 EutH_ACDH acetaldehy  30.0      31  0.0008   14.3   1.7   20    2-21    180-199 (528)
158 TIGR01488 HAD-SF-IB HAD-superf  29.8      36 0.00091   13.9   2.0   12  172-183   161-172 (204)
159 PRK11433 putative xanthine deh  29.7      24 0.00062   14.9   1.1   12  215-226   144-155 (217)
160 PRK09908 xanthine dehydrogenas  29.6      23 0.00059   15.1   1.0   18  215-232   100-118 (159)
161 PRK09376 rho transcription ter  29.1      20  0.0005   15.5   0.5   19  217-235   237-255 (416)
162 KOG0509 consensus               28.0      36 0.00093   13.9   1.7   57  164-228   391-447 (600)
163 TIGR03198 pucE xanthine dehydr  28.0      26 0.00067   14.7   1.0   12  215-226    95-106 (151)
164 cd04193 UDPGlcNAc_PPase UDPGlc  27.6      35 0.00089   14.0   1.6   21    3-23      9-29  (323)
165 cd01399 GlcN6P_deaminase GlcN6  27.5      33 0.00083   14.2   1.4   40    2-42     12-59  (232)
166 TIGR02057 PAPS_reductase phosp  26.2      41  0.0011   13.5   5.8  192   10-220    29-238 (239)
167 COG0607 PspE Rhodanese-related  26.2      42  0.0011   13.5   3.0   27    8-34     61-87  (110)
168 COG3349 Uncharacterized conser  25.7      42  0.0011   13.5   4.0   29   12-40      3-31  (485)
169 TIGR03193 4hydroxCoAred 4-hydr  25.5      29 0.00074   14.5   0.8   12  215-226    94-105 (148)
170 TIGR02374 nitri_red_nirB nitri  25.4      43  0.0011   13.4   2.3   47  169-228   430-476 (813)
171 TIGR02951 DMSO_dmsB dimethylsu  25.0      36 0.00092   13.9   1.3   30  198-229   103-133 (162)
172 pfam08240 ADH_N Alcohol dehydr  24.9      33 0.00085   14.1   1.1   13  216-228    64-76  (108)
173 KOG4283 consensus               23.9       6 0.00015   18.7  -2.9   19   13-31     58-76  (397)
174 cd01400 6PGL 6PGL: 6-Phosphogl  23.7      43  0.0011   13.4   1.4   40    2-42     16-60  (219)
175 TIGR02819 fdhA_non_GSH formald  23.6      18 0.00046   15.7  -0.5   10  218-227   106-115 (403)
176 KOG1311 consensus               23.5      17 0.00044   15.9  -0.6   15  214-228   126-140 (299)
177 PRK10509 bacterioferritin-asso  23.4      27  0.0007   14.6   0.4   41  174-227     8-48  (64)
178 TIGR01016 sucCoAbeta succinyl-  23.4      44  0.0011   13.4   1.4   25  161-185   306-332 (389)
179 KOG4533 consensus               22.2      48  0.0012   13.1   1.5   18    3-20    127-144 (317)
180 COG2080 CoxS Aerobic-type carb  22.1      37 0.00094   13.8   0.9   10  216-225    98-107 (156)
181 TIGR03451 mycoS_dep_FDH mycoth  22.1      42  0.0011   13.5   1.1   33    7-40    176-209 (358)
182 KOG1313 consensus               21.8      34 0.00087   14.0   0.6   15  213-227   114-128 (309)
183 cd06259 YdcF-like YdcF-like. Y  21.8      50  0.0013   13.0   4.6   31   10-40      1-41  (150)
184 TIGR02963 xanthine_xdhA xanthi  21.7      32 0.00082   14.2   0.5   15  166-180   375-389 (515)
185 COG5574 PEX10 RING-finger-cont  21.7      41   0.001   13.5   1.0   17  212-228   227-245 (271)
186 COG1063 Tdh Threonine dehydrog  21.6      32 0.00082   14.2   0.4   28   11-38    171-199 (350)
187 PTZ00038 ferredoxin; Provision  21.5      51  0.0013   12.9   2.0   41  164-222    77-122 (172)
188 PRK09880 L-idonate 5-dehydroge  21.4      42  0.0011   13.5   1.0   32    8-40    170-202 (343)
189 PRK06674 DNA polymerase III su  21.4      51  0.0013   12.9   5.4   14   16-29    273-286 (563)
190 PRK13339 malate:quinone oxidor  21.2      52  0.0013   12.9   3.0   27    5-31      2-28  (497)
191 PTZ00019 fructose-bisphosphate  20.9      53  0.0013   12.9   2.6   11  193-203   285-295 (356)
192 COG1832 Predicted CoA-binding   20.8      53  0.0013   12.9   3.8   39    3-41     11-52  (140)
193 PRK06647 DNA polymerase III su  20.4      54  0.0014   12.8   5.6   18   13-30     41-60  (560)
194 PRK13389 UTP--glucose-1-phosph  20.3      51  0.0013   13.0   1.2   20    1-21      1-20  (302)
195 KOG1615 consensus               20.2      54  0.0014   12.8   2.2   12  175-186   158-169 (227)
196 pfam04885 Stig1 Stigma-specifi  20.1      40   0.001   13.6   0.7   23  200-222    97-119 (136)
197 KOG2164 consensus               20.1      55  0.0014   12.8   1.5   16  217-232   203-220 (513)
198 pfam02008 zf-CXXC CXXC zinc fi  20.0      26 0.00067   14.7  -0.3   12  217-228    20-31  (48)

No 1  
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=100.00  E-value=0  Score=322.11  Aligned_cols=211  Identities=44%  Similarity=0.843  Sum_probs=177.4

Q ss_pred             CCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCC
Q ss_conf             94899980965699999999974983999997677887772799999999999998887520356158750110322444
Q gi|254781031|r    9 PSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHS   88 (240)
Q Consensus         9 ~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (240)
                      ||||+|||||+||+++|+++++++.+|++|||||||||..+.+++..+++.+.         ...+.+++++.++....+
T Consensus         2 kkavVLlSGGlDStt~L~~a~~~~~~v~alsfdYGQrh~~El~~A~~ia~~~g---------v~~h~vidl~~l~~~~~S   72 (231)
T PRK11106          2 KRAVVVFSGGQDSTTCLIQALQQYDEVHCITFDYGQRHRAEIDVARELALKLG---------ARAHKVLDVTLLNELAVS   72 (231)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHCC---------CCCEEEECCHHHHHHCCC
T ss_conf             80899907878999999999981994999987778671999999999999859---------840067532777775235


Q ss_pred             CCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             33222011----00012331011111112233377777743399365114544443455544302477777677530643
Q gi|254781031|r   89 SLTKNVAM----KIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMES  164 (240)
Q Consensus        89 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (240)
                      ..+.....    .......+..++|+||++++++++++|..+|+..|++|.+.+|++.+|||+++|.++++.++..+...
T Consensus        73 aLt~~~i~vp~~~~~~~~~p~T~VP~RN~ifLsiAaa~Ae~~ga~~I~~G~~~~D~sgYPDCr~eFi~a~~~al~~g~~~  152 (231)
T PRK11106         73 SLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVVLGMAK  152 (231)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             66777877777654445787646716729999999999998599959980465566889989899999999999851789


Q ss_pred             CEEEEEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             2167753138988999999998282000143255372162888655556688998687789999999973064
Q gi|254781031|r  165 HVTVHTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQKGWMEFKEK  237 (240)
Q Consensus       165 ~~~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~~~~~~~~~hCG~C~~C~~R~~af~~~~~~  237 (240)
                      +++|++||++++|.|||+++.+.+   .+++|+..|||||+|.+      +.|||+|.+|++|++||.|++..
T Consensus       153 ~i~i~aPl~~l~K~eiv~l~~~~~---~L~~p~~~TwSCY~g~~------g~~CG~C~sC~~R~~gF~e~~~~  216 (231)
T PRK11106        153 DIRFETPLMWLDKAETWALADYYG---QLDLVRHETLTCYNGIK------GDGCGHCAACHLRANGLNHYLAN  216 (231)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCC---CCCCCCCCCCCCCCCCC------CCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             819983777788889999998616---66865023552759799------99899893288899999995558


No 2  
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=100.00  E-value=0  Score=308.57  Aligned_cols=209  Identities=44%  Similarity=0.740  Sum_probs=181.2

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf             59948999809656999999999749839999976778877727999999999999988875203561587501103224
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS   86 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (240)
                      +.+|||++||||+||+++|+|+++++++|++|||||||||..+.+.+..+++++          ..++++++.+.++...
T Consensus         1 ~~~kavvl~SGG~DStt~l~~a~~~~~ev~alsfdYGQrh~~Ele~A~~iak~l----------gv~~~iid~~~~~~~~   70 (222)
T COG0603           1 MMKKAVVLLSGGLDSTTCLAWAKKEGYEVHALTFDYGQRHRKELEAAKELAKKL----------GVPHHIIDVDLLGEIG   70 (222)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHC----------CCCEEEECHHHHHHCC
T ss_conf             983499991688138999999996098899997507898689999999999981----------9982895416875358


Q ss_pred             CCCCCCCHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             4433222011000----123310111111122333777777433993651145444434555443024777776775306
Q gi|254781031|r   87 HSSLTKNVAMKIQ----DNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGM  162 (240)
Q Consensus        87 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (240)
                      .+..+......+.    ....+..|+|+||.++++++.++|..+|+..|++|.+.+|++++|||+++|.++++.++..++
T Consensus        71 ~saLtd~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~sgYPDcrpefi~a~~~~~~l~~  150 (222)
T COG0603          71 GSALTDDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDFSGYPDCRPEFIEALNEALNLGT  150 (222)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             88675888636666666666864476066099999999999875998599975321047899888899999999998625


Q ss_pred             CCCEE-EEEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             43216-7753138988999999998282000143255372162888655556688998687789999999973064
Q gi|254781031|r  163 ESHVT-VHTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQKGWMEFKEK  237 (240)
Q Consensus       163 ~~~~~-i~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~~~~~~~~~hCG~C~~C~~R~~af~~~~~~  237 (240)
                      ...++ +.+|+++++|.|||+++.++|      +++..|||||+|....      |||+|.+|.+|++||.++|..
T Consensus       151 ~~~~~~i~aPl~~l~Ka~iv~l~~elg------~~~~~T~SCY~g~~~~------~CG~C~sC~~R~~af~~~g~~  214 (222)
T COG0603         151 EKGVRIIHAPLMELTKAEIVKLADELG------VPLELTWSCYNGGEGD------HCGECESCVLRERAFKEAGLE  214 (222)
T ss_pred             CCCCCEEECCEEECCHHHHHHHHHHHC------CCCHHCEEEECCCCCC------CCCCCHHHHHHHHHHHHHCCC
T ss_conf             578617767833134999999888868------8510026776799988------787777789999999983786


No 3  
>TIGR00364 TIGR00364 exsB protein; InterPro: IPR004479   This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome.    In Sinorhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA , .    In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance .   The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr ..
Probab=100.00  E-value=0  Score=316.27  Aligned_cols=206  Identities=44%  Similarity=0.779  Sum_probs=183.0

Q ss_pred             EEEEEECCHHHHHHHHHHHHCC--CEEEEEEEECCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCE-EEECHHHCCCC
Q ss_conf             8999809656999999999749--8399999767788-777279999999999999888752035615-87501103224
Q gi|254781031|r   11 ALLLFSGGQDSSTCLSWALDRF--DRVETLSFDYGQR-NKVELECRLCVRKKIVELMPKWKDSLGEDH-ILPLAILGDIS   86 (240)
Q Consensus        11 av~l~SGGlDS~~~l~~l~~~~--~~v~~i~~~ygq~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   86 (240)
                      ||++||||+||++++++++++|  ++|++|||||||| |..+.+.|..+++.+.          .+++ .++++.++...
T Consensus         1 Av~~lSGG~DStT~~~~a~~~~GkyeV~a~TF~YGQR~H~~Ele~A~~ia~~Lg----------i~~~~~~Dl~~l~~l~   70 (227)
T TIGR00364         1 AVVVLSGGQDSTTVLLIALDEGGKYEVHAITFDYGQRAHSRELESARKIAEALG----------IRHHFVIDLSLLKQLG   70 (227)
T ss_pred             CEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHC----------CCCEEEECHHHHHHHH
T ss_conf             968743734689999999961795079985465013789999999999999808----------9707861779998554


Q ss_pred             C-CCCCCCHHHHHC---C-------CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             4-433222011000---1-------2331011111112233377777743399365114544443455544302477777
Q gi|254781031|r   87 H-SSLTKNVAMKIQ---D-------NNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIE  155 (240)
Q Consensus        87 ~-~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~  155 (240)
                      . +.++........   +       ...+..|+|+||++|++++.++|.+.|+..|.+|+...|++++|||+++|.++++
T Consensus        71 ~YsaLt~~~~~~~~~~~e~d~~~~~E~~p~tfVPgRN~~fl~~a~~yA~~~gA~~v~~G~~~~DfSgYPDCr~EFvka~n  150 (227)
T TIGR00364        71 KYSALTDEQEIPEQKSNEEDKEKALETLPNTFVPGRNLIFLSLAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKALN  150 (227)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             04523578756766665320235653113333780479999999998886184252200100036579888688999999


Q ss_pred             HHHHHC-CCCCEEE-----EEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             677530-6432167-----75313898899999999828200014325537216288865555668899868778999
Q gi|254781031|r  156 TAINLG-MESHVTV-----HTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLR  227 (240)
Q Consensus       156 ~~~~~~-~~~~~~i-----~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~~~~~~~~~hCG~C~~C~~R  227 (240)
                      .++.++ +..+|+|     .+|++++||.|||++|.++| ...++++++.|||||.|...-...+..|||+|.+|.+|
T Consensus       151 ~~l~Lgn~~~~v~i~Piql~aPL~~ltKaeiv~la~elG-kk~l~lv~~~T~sCY~G~~~ilhad~~~Cg~C~sC~lR  227 (227)
T TIGR00364       151 HALNLGNMLTPVEIRPIQLEAPLMDLTKAEIVKLADELG-KKLLDLVIKETYSCYAGGRKILHADGDGCGKCESCMLR  227 (227)
T ss_pred             HHHHHHCCCCCCEEEEEEEECCEEECCHHHHHHHHHHHC-CCEEEEEECCCCHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf             999974126881120246666701269899999988735-11231100011111316730564237887987435579


No 4  
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=100.00  E-value=1.4e-45  Score=302.18  Aligned_cols=169  Identities=46%  Similarity=0.813  Sum_probs=154.3

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCC
Q ss_conf             48999809656999999999749839999976778877727999999999999988875203561587501103224443
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHSS   89 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (240)
                      |||+|||||+||++++++++++|++|++|||||||||..+.+++..+++.+.                            
T Consensus         1 kavvllSGGlDSt~~l~~~~~~g~~v~~l~~dYGQr~~~E~~~a~~i~~~l~----------------------------   52 (169)
T cd01995           1 KAVVLLSGGLDSTTCLAWAKKEGYEVHALSFDYGQRHAKEEEAAKLIAEKLG----------------------------   52 (169)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHC----------------------------
T ss_conf             9899907878899999999984996999997569854999999999999968----------------------------


Q ss_pred             CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             32220110001233101111111223337777774339936511454444345554430247777767753064321677
Q gi|254781031|r   90 LTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVH  169 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (240)
                                    ...++|+||++++++++++|..+|++.|++|.+.+|++.+||++++|.+++++++..+.+.+++|+
T Consensus        53 --------------~~~~VP~RN~ifls~A~~~A~~~g~~~v~~G~~~~d~~~ypDc~~~F~~a~~~~~~~~~~~~v~i~  118 (169)
T cd01995          53 --------------PSTYVPARNLIFLSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPEFIEAMNKALNLGTENGIKIH  118 (169)
T ss_pred             --------------CCCEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             --------------994652838999999999999829996899982477568999869999999999983087985898


Q ss_pred             EEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             5313898899999999828200014325537216288865555668899868778999999997
Q gi|254781031|r  170 TPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQKGWME  233 (240)
Q Consensus       170 ~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~~~~~~~~~hCG~C~~C~~R~~af~~  233 (240)
                      +||++++|.||++++.++|      +|+..|||||+|.+       .|||+|.+|++|++||.|
T Consensus       119 aP~~~~~K~eiv~~g~~lg------v~~~~T~SCy~g~~-------~~CG~C~sC~~R~~aF~e  169 (169)
T cd01995         119 APLIDLSKAEIVRLGGELG------VPLELTWSCYNGGE-------KHCGECDSCLLRKRAFEE  169 (169)
T ss_pred             ECCCCCCHHHHHHHHHHCC------CCHHHCCCCCCCCC-------CCCCCCHHHHHHHHHHCC
T ss_conf             4333598999999998849------97998215779998-------989899779999999639


No 5  
>pfam06508 ExsB ExsB. This family includes putative transcriptional regulators from Bacteria and Archaea.
Probab=99.91  E-value=2.6e-24  Score=169.76  Aligned_cols=133  Identities=46%  Similarity=0.801  Sum_probs=107.2

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCC
Q ss_conf             48999809656999999999749839999976778877727999999999999988875203561587501103224443
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHSS   89 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (240)
                      |||++||||+||+++|++++++++++++|||||||+|..+.+++..+++.+          ..++++++++.++....+.
T Consensus         1 Kavvl~SGG~DSt~~l~~a~~~~~~v~ait~dYGQ~~~~Ei~~A~~ia~~l----------~i~h~vidl~~l~~~~~sa   70 (137)
T pfam06508         1 KAVVLLSGGLDSTTCLAWAKKEGYEVYALTFDYGQRHSKELECAKKIAKAL----------GVEHKIVDLDFLKQIGGSA   70 (137)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHC----------CCCCEEECCCHHHHHCCCC
T ss_conf             989991787899999999998699689998147887399999999999982----------9975030330244416552


Q ss_pred             CCCCHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf             322201----100012331011111112233377777743399365114544443455544302477
Q gi|254781031|r   90 LTKNVA----MKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIR  152 (240)
Q Consensus        90 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~  152 (240)
                      +.....    ...........++|+||+++++++.++|..+|++.|++|.+.+|+..+|||+++|.+
T Consensus        71 L~~~~~~vp~~~~~~~~~~~t~VP~RN~iflsiA~a~A~~~g~~~I~~G~~~~D~~~YPDcr~eFi~  137 (137)
T pfam06508        71 LTDDSIEVPDSELESEEIPNTYVPGRNLIFLSIAASYAEAIGANDIFIGVNEEDFSGYPDCRPEFVK  137 (137)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCC
T ss_conf             2368855566543456787765636549999999999998699979995655756889998867619


No 6  
>pfam02568 ThiI Thiamine biosynthesis protein (ThiI). ThiI is required for thiazole synthesis, required for thiamine biosynthesis.
Probab=99.72  E-value=2.5e-16  Score=120.26  Aligned_cols=166  Identities=19%  Similarity=0.165  Sum_probs=105.0

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCEEEECHHHCCCC
Q ss_conf             99489998096569999999997498399999767788777279999999999999888752-03561587501103224
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKD-SLGEDHILPLAILGDIS   86 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   86 (240)
                      ..|+|+|||||+||.+++|+++++|.+|++|||+-+..   ..+.+......+.+...++.. ....++.++....-.  
T Consensus         3 ~gk~l~LlSGGiDSpVAa~lmmkRG~~V~~vhf~~~p~---~~~~~~~k~~~l~~~l~~y~~~~~~~l~vv~~~~~~~--   77 (197)
T pfam02568         3 QGKVLALLSGGIDSPVAAYLMMRRGCRVVALHFINEPG---TSEEAIEKVRKLAELLAEYGTSCEGKLVVVDFTKVQK--   77 (197)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCC---CCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHH--
T ss_conf             77189886687129999999998799799999879999---9899999999999999973788754499957499999--


Q ss_pred             CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             44332220110001233101111111223337777774339936511454444345554430247777767753064321
Q gi|254781031|r   87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHV  166 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (240)
                            ..    ................++.++..+|...|+..+.+|.+-++.+..+-.         ++.........
T Consensus        78 ------~i----~~~~~~~~~cv~cKr~M~r~A~~iA~~~ga~~IVTGEsLGQVaSQTl~---------nl~~i~~~~~~  138 (197)
T pfam02568        78 ------EI----IEKAPEKYRCVLCKRCMYRAAEKVAEEEGADALVTGESLGQVASQTLD---------NLRVISAATNL  138 (197)
T ss_pred             ------HH----HHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCC---------HHHHHHHHHCC
T ss_conf             ------99----962898765456999999999999998499899847303121004531---------06999876248


Q ss_pred             EEEEEECCCCHHHHHHHHHHHCCCHHCCCCH
Q ss_conf             6775313898899999999828200014325
Q gi|254781031|r  167 TVHTPLMWLKKYETWKLAQDIGGQDLVNLIL  197 (240)
Q Consensus       167 ~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~~  197 (240)
                      .|++|+++++|.||++.++++|.++....++
T Consensus       139 pilRPLig~DK~EIi~~Ar~IGt~~~s~~~~  169 (197)
T pfam02568       139 PILRPLIGLDKEEIINLAKEIGTYEISIEPY  169 (197)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHCCHHHHCCCC
T ss_conf             5313434699999999999948677662888


No 7  
>PRK08349 hypothetical protein; Validated
Probab=99.71  E-value=1.5e-16  Score=121.68  Aligned_cols=163  Identities=16%  Similarity=0.160  Sum_probs=104.7

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCCEEEECHHHCCCCCC
Q ss_conf             4899980965699999999974983999997677887772799999999999998887520-356158750110322444
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDS-LGEDHILPLAILGDISHS   88 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   88 (240)
                      |||+|||||+||.+++|+++++|.+|+++||+.|..   ..+.+..+++.+    ..+... ....+.++.....     
T Consensus         2 Kvl~LlSGGiDSPVAa~~mmKRG~~V~~lhf~~~~~---~~~kv~~~~~~L----~~~~~~~~~~~~iv~~~~~~-----   69 (198)
T PRK08349          2 KVVALLSSGIDSPVAIYLMLSRGVEIYPLHFRQDEK---KEHKARELVEIL----QEIHGGKVKDPVIVDAYEVQ-----   69 (198)
T ss_pred             EEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCHH---HHHHHHHHHHHH----HHHCCCCCCEEEEECCHHHH-----
T ss_conf             499996588438999999997799799998638778---899999999999----99708887528997722532-----


Q ss_pred             CCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             33222011000123310111111122333777777433993651145444434555443024777776775306432167
Q gi|254781031|r   89 SLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTV  168 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (240)
                         .................-.....++.++..+|...|+.++.+|.+-++.+..+         +.++.......+..|
T Consensus        70 ---~~i~~~i~~~~~~~~~~vl~rr~M~riA~~iA~~~g~~aivTGEsLGQVASQT---------l~NL~~i~~~~~~pV  137 (198)
T PRK08349         70 ---GPVFEKLREIGKEKWTCLFCKYTMYRVAERYAHEIGAKAIVTGDSLGQVASQT---------LDNLMVISTATDLPI  137 (198)
T ss_pred             ---HHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH---------HHHHHHHHHHHCCCC
T ss_conf             ---89999998607765130999999999999999985998898452167888999---------988999987506766


Q ss_pred             EEEECCCCHHHHHHHHHHHCCCHHCCCC
Q ss_conf             7531389889999999982820001432
Q gi|254781031|r  169 HTPLMWLKKYETWKLAQDIGGQDLVNLI  196 (240)
Q Consensus       169 ~~P~~~~tK~eI~~~~~~~~~~~~~~~~  196 (240)
                      .+|+++++|.||++.++++|.++....+
T Consensus       138 lRPLig~DK~EII~~Ar~IGTye~S~~~  165 (198)
T PRK08349        138 LRPLIGLDKEEIVRIAKEIGTFEISIEP  165 (198)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCHHHHCCC
T ss_conf             4776679989999999981955343289


No 8  
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.71  E-value=2.7e-16  Score=120.09  Aligned_cols=164  Identities=21%  Similarity=0.187  Sum_probs=98.2

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCC
Q ss_conf             48999809656999999999749839999976778877727999999999999988875203561587501103224443
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHSS   89 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (240)
                      |+|+|+|||+||++++|+++++|++|++|||+.+.-.   .+.+...+   ......+..+..............     
T Consensus         1 kvl~L~SGGiDS~VAa~ll~krG~~V~~l~f~~~~~~---~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~-----   69 (177)
T cd01712           1 KALALLSGGIDSPVAAWLLMKRGIEVDALHFNSGPFT---SEKAREKV---EDLARKLARYSPGHKLVVIIFTFF-----   69 (177)
T ss_pred             CEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCC---CHHHHHHH---HHHHHHHHHHCCCCEEEEEECCHH-----
T ss_conf             9899957781699999999987998999999899988---88999999---999999999489962899945389-----


Q ss_pred             CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             32220110001233101111111223337777774339936511454444345554430247777767753064321677
Q gi|254781031|r   90 LTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVH  169 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (240)
                      ...  ...............  +..++..+..+|..+|++.+++|...+....         +...++..........|.
T Consensus        70 ~~~--~~~~~g~~~npcv~c--kr~m~r~a~~~A~~~ga~~IvTGe~lGQvas---------qt~~nl~~i~~~~~~~il  136 (177)
T cd01712          70 VQK--EIYGYGKEKYRCILC--KRMMYRIAEKLAEELGADAIVTGESLGQVAS---------QTLENLLVISSGTDLPIL  136 (177)
T ss_pred             HHH--HHHHHCCCCCCCEEH--HHHHHHHHHHHHHHCCCCEEEECCCHHHHHH---------HHHHHHHHHHHHHCCCCC
T ss_conf             999--999708888986362--9999999999999869989986652220447---------689999999874256421


Q ss_pred             EEECCCCHHHHHHHHHHHCCCHHCCCCH
Q ss_conf             5313898899999999828200014325
Q gi|254781031|r  170 TPLMWLKKYETWKLAQDIGGQDLVNLIL  197 (240)
Q Consensus       170 ~P~~~~tK~eI~~~~~~~~~~~~~~~~~  197 (240)
                      +|+..+||.||++++++.|.++....+.
T Consensus       137 RPL~~~dK~EI~~~A~~igt~~~s~~~~  164 (177)
T cd01712         137 RPLIGFDKEEIIGIARRIGTYDISIRPR  164 (177)
T ss_pred             CCCCCCCHHHHHHHHHHHCCHHHHCCCC
T ss_conf             4888999899999999809674405895


No 9  
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=99.71  E-value=3.8e-16  Score=119.19  Aligned_cols=170  Identities=22%  Similarity=0.282  Sum_probs=111.9

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf             59948999809656999999999749839999976778877727999999999999988875203561587501103224
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS   86 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (240)
                      ..+++|+|+|||+||.+++|+++++|.++++|||+-+.   ...+.+...+..+......+ ......+.++....... 
T Consensus       175 t~Gk~l~LlSGGIDSPVAa~~mmkRG~~v~~v~f~~~p---~t~~~a~~kv~~l~~~L~~y-~~~~kl~~v~f~~~~~~-  249 (399)
T PRK01565        175 TSGKALLLLSGGIDSPVAGYLAMKRGVEIEAVHFHSPP---YTSERAKEKVIDLARILAKY-GGRIKLHVVPFTEIQEE-  249 (399)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCC---CCCHHHHHHHHHHHHHHHHH-CCCCEEEEECCHHHHHH-
T ss_conf             77857998617875399999998559879999986899---87789999999999999972-88855999663999999-


Q ss_pred             CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             44332220110001233101111111223337777774339936511454444345554430247777767753064321
Q gi|254781031|r   87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHV  166 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (240)
                                 ...........-....+++.++...|...|+.++.+|.+-++.+..+         +.++.......+.
T Consensus       250 -----------i~~~~~~~~~~vl~RR~M~riA~~iA~~~~~~alvTGESLGQVASQT---------l~Nl~~i~~~~~~  309 (399)
T PRK01565        250 -----------IKKKVPESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQT---------LESMQAINAVTNL  309 (399)
T ss_pred             -----------HHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH---------HHHHHHHHHHCCC
T ss_conf             -----------98608800385999999999999999985997898241355676755---------6778888752177


Q ss_pred             EEEEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCC
Q ss_conf             6775313898899999999828200014325537216
Q gi|254781031|r  167 TVHTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTC  203 (240)
Q Consensus       167 ~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC  203 (240)
                      .|.+|++.++|.||++.+++.|.++....|+.  -+|
T Consensus       310 pVlRPLIg~DK~EII~~Ar~IGTye~Si~p~e--dcC  344 (399)
T PRK01565        310 PVLRPLIGMDKEEIIEIAKEIGTYDISILPYE--DCC  344 (399)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCC--CEE
T ss_conf             54466557898999999987096011217875--726


No 10 
>PRK01269 thiamine biosynthesis protein ThiI; Provisional
Probab=99.67  E-value=1.9e-15  Score=114.85  Aligned_cols=164  Identities=19%  Similarity=0.158  Sum_probs=105.5

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCEEEECHHHCCC
Q ss_conf             599489998096569999999997498399999767788777279999999999999888752-0356158750110322
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKD-SLGEDHILPLAILGDI   85 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   85 (240)
                      ..+++++|+|||+||.+++|+++++|.+++++|||+|...  .+.....+++.+.   .++.. ....++.++....-..
T Consensus       176 tqGkvL~LlSGGiDSPVAa~~mmKRG~~v~~l~F~lg~~~--~e~~V~~va~~L~---~~~~~~~~vr~~~V~f~~v~~e  250 (483)
T PRK01269        176 TQEDVLSLISGGFDSGVASYMLMRRGSRVHYCFFNLGGAA--HEIGVKQVAHYLW---NRYGSSHRVRFISVDFEPVVGE  250 (483)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCCCHH--HHHHHHHHHHHHH---HHHCCCCCEEEEEECCHHHHHH
T ss_conf             7786899952788838889999845987999995799868--8999999999999---9738888708999767999999


Q ss_pred             CCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             44433222011000123310111111122333777777433993651145444434555443024777776775306432
Q gi|254781031|r   86 SHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESH  165 (240)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (240)
                                  .........+.-....+++.++..+|...|+.++.+|.+-++-+..+         +.++.......+
T Consensus       251 ------------I~~~v~~~~~~vv~KR~M~R~A~~iA~~~g~~ALVTGESLGQVASQT---------L~NL~~i~~~~~  309 (483)
T PRK01269        251 ------------ILEKVDNGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVSSQT---------LTNLRLIDNVTD  309 (483)
T ss_pred             ------------HHHHCCHHHEEHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH---------HHHHHHHHHHCC
T ss_conf             ------------98738763443999999999999999985998898555034567767---------878899887407


Q ss_pred             EEEEEEECCCCHHHHHHHHHHHCCCHHCCCC
Q ss_conf             1677531389889999999982820001432
Q gi|254781031|r  166 VTVHTPLMWLKKYETWKLAQDIGGQDLVNLI  196 (240)
Q Consensus       166 ~~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~  196 (240)
                      ..|.+|++.++|.||++.+++.|.+++.+..
T Consensus       310 ~pVlRPLIg~DK~eII~~Ar~IGTye~s~~~  340 (483)
T PRK01269        310 TLILRPLIAMDKEDIIDLARQIGTEDFAKTM  340 (483)
T ss_pred             CCEECCCCCCCHHHHHHHHHHHCHHHHHCCC
T ss_conf             7400476679889999999983928776036


No 11 
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=99.67  E-value=3.3e-15  Score=113.36  Aligned_cols=168  Identities=22%  Similarity=0.218  Sum_probs=110.5

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH-HHHHHCC--CCCEEEECHHHC
Q ss_conf             5994899980965699999999974983999997677887772799999999999998-8875203--561587501103
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELM-PKWKDSL--GEDHILPLAILG   83 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~   83 (240)
                      ...|+|+|+|||+||.+++|+++++|.+|+++||+-..   ...+.+   ..+..... .....+.  ...+.++....-
T Consensus       174 t~Gk~l~LlSGGIDSPVA~~l~mkRG~~v~~v~f~~~p---~~~~~a---~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~  247 (383)
T COG0301         174 TQGKVLLLLSGGIDSPVAAWLMMKRGVEVIPVHFGNPP---YTSEKA---REKVVALALLRLTSYGGKVRLYVVPFTEVQ  247 (383)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEECCCC---CCHHHH---HHHHHHHHHHHHCCCCCCEEEEEECHHHHH
T ss_conf             67748999707877499999998569877999972799---851889---999999986430246872289997629999


Q ss_pred             CCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             22444332220110001233101111111223337777774339936511454444345554430247777767753064
Q gi|254781031|r   84 DISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGME  163 (240)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (240)
                      .            ............-.....++.++.-++...|+.++.+|..-++-+..+         +.+|......
T Consensus       248 ~------------~i~~~~~~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVASQT---------l~nL~~i~~~  306 (383)
T COG0301         248 E------------EILEKVPESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVASQT---------LENLRVIDSV  306 (383)
T ss_pred             H------------HHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHH---------HHHHHHHHHC
T ss_conf             9------------998636753020478999999999999983983998368610466767---------8889999815


Q ss_pred             CCEEEEEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCC
Q ss_conf             3216775313898899999999828200014325537216
Q gi|254781031|r  164 SHVTVHTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTC  203 (240)
Q Consensus       164 ~~~~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC  203 (240)
                      .+..|++|++.++|.||++.++++|.++..-.++.  .+|
T Consensus       307 t~~pIlRPLI~~DK~eIi~~Ar~IgT~eiSi~p~e--~cc  344 (383)
T COG0301         307 TNTPVLRPLIGLDKEEIIEIARRIGTYEISIEPPE--DCC  344 (383)
T ss_pred             CCCCEECCCCCCCHHHHHHHHHHHCCHHHHCCCCC--CCC
T ss_conf             58742314457998999999998297443135788--885


No 12 
>TIGR00342 TIGR00342 thiamine biosynthesis/tRNA modification protein ThiI; InterPro: IPR003720 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway . Almost all the proteins in this group have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0009228 thiamin biosynthetic process.
Probab=99.66  E-value=6.1e-16  Score=117.87  Aligned_cols=172  Identities=20%  Similarity=0.157  Sum_probs=113.0

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH----HHHCCCCCEEEECHHH
Q ss_conf             599489998096569999999997498399999767788777279999999999999888----7520356158750110
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPK----WKDSLGEDHILPLAIL   82 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   82 (240)
                      .-+|||+|+|||+||.+++|++++||++|++|||+-...|   .+   ...+++..++..    -......++.++....
T Consensus       185 ~~Gkvl~LlSGGiDSPVAaf~~m~RGc~V~~vhf~~~~~~---~~---~~~~kv~~la~~~~~~~~~~~~~l~~~~F~~~  258 (391)
T TIGR00342       185 TQGKVLALLSGGIDSPVAAFLAMKRGCRVVAVHFFNEPAA---SE---KAREKVERLANLLSLNETGGSVKLYVVDFTDV  258 (391)
T ss_pred             CHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEECCCCCC---CH---HHHHHHHHHHHHHHHCCCEEEEEEEEECHHHH
T ss_conf             2536320411883516799999663877999973288552---46---89999999999885400037999998543899


Q ss_pred             CCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             32244433222011000123310111111122333777777433993651145444434555443024777776775306
Q gi|254781031|r   83 GDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGM  162 (240)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (240)
                      -...            ..........-.....++.+|..++...|+.++.+|..-++-+..+         +.++.....
T Consensus       259 ~~~~------------~~~~~e~~~~v~~rR~M~~~A~~~ae~~g~~A~VTGe~LGQVASQT---------L~Nl~vI~~  317 (391)
T TIGR00342       259 QEEI------------IEIIPEKYTMVLCRRLMLKIASKVAEKEGCLAIVTGESLGQVASQT---------LENLRVIQA  317 (391)
T ss_pred             HHHH------------HHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH---------HHHHHHHHH
T ss_conf             9999------------8418998788740667999999888860994899766342037778---------889999972


Q ss_pred             CCCEEEEE-EECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCC
Q ss_conf             43216775-3138988999999998282000143255372162888
Q gi|254781031|r  163 ESHVTVHT-PLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGK  207 (240)
Q Consensus       163 ~~~~~i~~-P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~  207 (240)
                      ..+..|.. |+++++|.+|+++|+++|.++..-.+..  -+|+-+.
T Consensus       318 ~~~~~iL~RPLIg~DK~~Ii~~Ak~IgTyeiSi~~~~--~Cc~~~~  361 (391)
T TIGR00342       318 VVNTPILRRPLIGMDKEEIIELAKEIGTYEISIEPHE--DCCTIFK  361 (391)
T ss_pred             CCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCC--CCCCEEC
T ss_conf             3787424077554797899999741396214441257--8863002


No 13 
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=99.45  E-value=2e-12  Score=96.08  Aligned_cols=132  Identities=17%  Similarity=0.171  Sum_probs=86.6

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf             59948999809656999999999749839999976778877727999999999999988875203561587501103224
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS   86 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (240)
                      ...++++|+|||+ |.+++|+++++|.+++++||+.|.+   ..+    .++.+.....++. .....+.+...      
T Consensus       178 s~Gk~l~LlSGGi-SPVAa~~mmKRG~~v~~vhf~~~~~---~~~----kv~~l~~~L~~y~-~~~~~~~~~~~------  242 (310)
T PRK08384        178 TQGKMVGLLSDEL-SAVAIFLMMKRGVEVIPVHIGMGEK---NLE----KVRKLWNQLKKYS-YGSKGRLVVVK------  242 (310)
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHHCCCEEEEEEECCCHH---HHH----HHHHHHHHHHHHC-CCCCEEEEEEC------
T ss_conf             7884899953886-3999999985698799998568878---999----9999999999867-99846999966------


Q ss_pred             CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             44332220110001233101111111223337777774339936511454444345554430247777767753064321
Q gi|254781031|r   87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHV  166 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (240)
                                                  ....+...|..+|+.++.+|.+-++.+..+         +.++.......+.
T Consensus       243 ----------------------------~~~~a~~ia~~~~~~alvTGEsLGQVASQT---------l~nl~~i~~~~~~  285 (310)
T PRK08384        243 ----------------------------NFERVNKIIRDFGAKGVVKGLRPEQLASET---------LENIYEDSRMFDV  285 (310)
T ss_pred             ----------------------------HHHHHHHHHHHHCCCEEEECCCHHHHHHHH---------HHHHHHHHHCCCC
T ss_conf             ----------------------------599999999985998999774125545457---------9889999730488


Q ss_pred             EEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             677531389889999999982820
Q gi|254781031|r  167 TVHTPLMWLKKYETWKLAQDIGGQ  190 (240)
Q Consensus       167 ~i~~P~~~~tK~eI~~~~~~~~~~  190 (240)
                      .|.+|++.++|.||++.+++.|.+
T Consensus       286 PVlRPLIg~DK~EII~~Ar~IGTy  309 (310)
T PRK08384        286 PVYYPLIALPDEYIEKVKEKIGTF  309 (310)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             730385689989999999863889


No 14 
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed
Probab=99.37  E-value=5.2e-12  Score=93.54  Aligned_cols=171  Identities=16%  Similarity=0.047  Sum_probs=98.7

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf             59948999809656999999999749839999976778877727999999999999988875203561587501103224
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS   86 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (240)
                      .++|++|.+|||+||++.|++|+++|++|+.+|+..+.......  ..+..+.+.+..........++++++....  ..
T Consensus         3 sk~rV~VamSGGVDSsVaA~LL~~~Gy~V~Gv~m~~w~~~~~~~--~C~~~~d~~dA~~va~~LgIp~~v~d~~~~--f~   78 (355)
T PRK00143          3 SKKRVVVGMSGGVDSSVAAALLKEQGYDVIGLFMKLWDDDDGSG--GCCAEEDIADARAVADKLGIPLYVVDFAKE--FW   78 (355)
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEECHHHH--HH
T ss_conf             88889999167899999999999779958999998876887778--998578899999999986985799686998--76


Q ss_pred             CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC------------CCCCCHHHHHHH
Q ss_conf             44332220110001233101111111223337777774339936511454444345------------554430247777
Q gi|254781031|r   87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSG------------YPDCRHDTIRAI  154 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~------------~~~~~~~~~~~~  154 (240)
                      ......-......+..+.-....++.. .+......|..+|++.+++|.-+.-...            .+|.+-+     
T Consensus        79 ~~Vi~~f~~~Y~~G~TPNPcv~CN~~I-KFg~l~~~A~~lgad~iATGHYAri~~~~~~~~L~r~~D~~KDQSYf-----  152 (355)
T PRK00143         79 DNVFDYFLDEYKAGRTPNPCVLCNKEI-KFKAFLDYALELGADYIATGHYARIRDEDGRYELLRAVDPNKDQSYF-----  152 (355)
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHCCCCC-CHHHHHHHHHHCCCCEECCCCEEEEEECCCEEEEEECCCCCCCCEEE-----
T ss_conf             788999999997699999733408723-39999999987399842335259999159818998678898872057-----


Q ss_pred             HHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             76775306432167753138988999999998282
Q gi|254781031|r  155 ETAINLGMESHVTVHTPLMWLKKYETWKLAQDIGG  189 (240)
Q Consensus       155 ~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~  189 (240)
                        |....+..--++..|+-.++|.||.+++++++.
T Consensus       153 --L~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gL  185 (355)
T PRK00143        153 --LYQLTQEQLAKLLFPLGELTKPEVREIAAEIGL  185 (355)
T ss_pred             --EECCCHHHHHHEECCCCCCCHHHHHHHHHHCCC
T ss_conf             --610579887420758767735899999997589


No 15 
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.34  E-value=8.4e-12  Score=92.24  Aligned_cols=192  Identities=16%  Similarity=0.078  Sum_probs=105.8

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf             59948999809656999999999749839999976778877727999999999999988875203561587501103224
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS   86 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (240)
                      ..+|+|+++|||+||++.|++|.++|++|+.||++-+.-......   +..+.+.+..........+++.++...  ..+
T Consensus         2 ~~~kV~v~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~~~~~~~C---~s~~d~~da~~va~~LGIp~~~vdf~~--~y~   76 (356)
T COG0482           2 KKKKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDEDGGGGC---CSEEDLRDAERVADQLGIPLYVVDFEK--EFW   76 (356)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCC---CCHHHHHHHHHHHHHHCCCEEEECHHH--HHH
T ss_conf             876799990577789999999997697499999996414788867---725678999999998099559984689--988


Q ss_pred             CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC---CCCCCHHHHHHHHHHH--HHC
Q ss_conf             44332220110001233101111111223337777774339936511454444345---5544302477777677--530
Q gi|254781031|r   87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSG---YPDCRHDTIRAIETAI--NLG  161 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~  161 (240)
                      ......-......+..+.-.....+. +.+.....++...|++.+++|........   ....+..=....+..+  ...
T Consensus        77 ~~V~~~f~~~Y~~G~TPNPci~CN~~-iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~~  155 (356)
T COG0482          77 NKVFEYFLAEYKAGKTPNPCILCNKE-IKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYALS  155 (356)
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHCCHH-HHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHEECCCC
T ss_conf             88888778998579999965104878-89999999999759985787446765437760001467874203000201268


Q ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCC
Q ss_conf             643216775313898899999999828200014325537216288
Q gi|254781031|r  162 MESHVTVHTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLG  206 (240)
Q Consensus       162 ~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~  206 (240)
                      ...--++..|+-.++|.||-++|++.+....-+  -..|+=|..|
T Consensus       156 ~~ql~~~lFPlG~l~K~evR~iA~~~gL~~a~K--kdS~~ICFi~  198 (356)
T COG0482         156 QEQLERLLFPLGDLEKLEVRPIAAEKGLPTAKK--KDSQGICFIG  198 (356)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC--CCCCCCEECC
T ss_conf             877753225677777789999999759976676--6677622137


No 16 
>PRK05370 argininosuccinate synthase; Validated
Probab=99.27  E-value=1.4e-10  Score=84.67  Aligned_cols=166  Identities=10%  Similarity=0.029  Sum_probs=88.0

Q ss_pred             HCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH--
Q ss_conf             135994899980965699999999974983999997677887772799999999999998887520356158750110--
Q gi|254781031|r    5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAIL--   82 (240)
Q Consensus         5 ~~~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   82 (240)
                      |..-||+|+.||||||+++++.||.++|++|++++.|.||..+...+....-+.++.       ..  ..++++....  
T Consensus         8 ~~~gkKVvLAYSGGLDTSv~l~wL~e~g~eVia~taDvGQ~de~d~~~i~~kA~~~G-------A~--k~~v~D~reefv   78 (447)
T PRK05370          8 LPVGQRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYG-------AE--NARLIDCRAQLV   78 (447)
T ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHC-------CC--EEEEECCHHHHH
T ss_conf             878888999958982799999999875987999999799986133899999999829-------97--899971799999


Q ss_pred             CCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             32244433222011000123310111111122333777777433993651145444434555443024777776775306
Q gi|254781031|r   83 GDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGM  162 (240)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (240)
                      ....+ ....................+..-..........+...|++.+..|...-      .+-+..+...    ....
T Consensus        79 ~~~i~-ai~a~A~y~~~~g~~Y~l~t~laRplia~~lv~~a~~~ga~~iaHGaTGK------GNDQVRFe~~----~~~l  147 (447)
T PRK05370         79 AEGIA-AIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYK------GNDIERFYRY----GLLT  147 (447)
T ss_pred             HHHHH-HHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCC------CCCHHHHHHH----HHHH
T ss_conf             99999-99736233302576445877307889999999999983998995577678------7438899999----9852


Q ss_pred             CCCEEEEEEECCC-------CHHHHHHHHHHHCCC
Q ss_conf             4321677531389-------889999999982820
Q gi|254781031|r  163 ESHVTVHTPLMWL-------KKYETWKLAQDIGGQ  190 (240)
Q Consensus       163 ~~~~~i~~P~~~~-------tK~eI~~~~~~~~~~  190 (240)
                      ...++|++|+..+       +..|.++.+++.|.+
T Consensus       148 ~P~lkIiaPwRd~~f~~el~sR~e~i~Ya~~~gIp  182 (447)
T PRK05370        148 NPELKIYKPWLDQDFIDELGGRAEMSEFMIACGFD  182 (447)
T ss_pred             CCCCEEECCCCCHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf             99876971433466665415749999999984998


No 17 
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The  archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.26  E-value=1.5e-11  Score=90.63  Aligned_cols=176  Identities=14%  Similarity=0.041  Sum_probs=96.2

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCC
Q ss_conf             48999809656999999999749839999976778877727999999999999988875203561587501103224443
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHSS   89 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (240)
                      |+++.+|||+||++.|++|+++|++|+.+|+..+.......  .....+.+.+..........++++++....  .....
T Consensus         1 kV~v~mSGGVDSsvaA~LL~~~G~~V~gv~m~~w~~~~~~~--~C~~~~d~~dA~~va~~LgIp~~v~d~~~e--f~~~V   76 (349)
T cd01998           1 KVVVAMSGGVDSSVAAALLKEQGYEVIGVFMKNWDEDDGKG--GCCSEEDLKDARRVADQLGIPHYVVNFEKE--YWEKV   76 (349)
T ss_pred             CEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEECHHHH--HHHHH
T ss_conf             98999077899999999998779957999999678876678--988677899999999986996799680998--86888


Q ss_pred             CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC----C--HHHHHHHHHHHHHCCC
Q ss_conf             322201100012331011111112233377777743399365114544443455544----3--0247777767753064
Q gi|254781031|r   90 LTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDC----R--HDTIRAIETAINLGME  163 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~  163 (240)
                      ...-......+..+.-....++. +.+......|...|++.+++|.-+.-.......    .  ...-++.--+......
T Consensus        77 ~~~f~~~Y~~G~TPNPcv~CN~~-IKF~~l~~~A~~~g~d~iATGHYAri~~~~~~~~~L~r~~D~~KDQSYfL~~l~~~  155 (349)
T cd01998          77 FEPFLEEYKKGRTPNPDILCNKE-IKFGALLDYAKKLGADYIATGHYARIEEDNNGRYRLLRGVDPNKDQSYFLSQLSQE  155 (349)
T ss_pred             HHHHHHHHHCCCCCCCCHHCCCE-EEHHHHHHHHHHCCCCEECCCCEEEEEECCCCCEEEEECCCCCCCCCEEEECCCHH
T ss_conf             99999999748999876211873-51999999998759986413514788975898489987689987820564012487


Q ss_pred             CCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             321677531389889999999982820
Q gi|254781031|r  164 SHVTVHTPLMWLKKYETWKLAQDIGGQ  190 (240)
Q Consensus       164 ~~~~i~~P~~~~tK~eI~~~~~~~~~~  190 (240)
                      .--++..|+-.++|.||.++|++++..
T Consensus       156 ~L~~~~FPLG~~~K~eVR~iA~~~gl~  182 (349)
T cd01998         156 QLSRLIFPLGDLTKPEVREIAKELGLP  182 (349)
T ss_pred             HHHHEECCCCCCCHHHHHHHHHHCCCC
T ss_conf             661038788786538999999985999


No 18 
>pfam03054 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs.
Probab=99.25  E-value=1.7e-11  Score=90.30  Aligned_cols=170  Identities=15%  Similarity=0.027  Sum_probs=93.7

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCC
Q ss_conf             48999809656999999999749839999976778877727999999999999988875203561587501103224443
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHSS   89 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (240)
                      |++|.+|||+||++.|++|+++|++|+.+|+..+...... ....+....+.+..........++++++....  .....
T Consensus         2 kV~VamSGGVDSsVaA~LL~~~Gy~V~Gv~m~~w~~~~~~-~~~C~~~~d~~dA~~va~~LgIp~~v~d~~~~--f~~~V   78 (354)
T pfam03054         2 KVVVAMSGGVDSSVAAYLLKEQGYEVIGVFMKNWDEEDEF-GHGCCSEEDLADAQRVCEQLGIPLYVVNFEKE--YWEKV   78 (354)
T ss_pred             EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCEEEECHHHH--HHHHH
T ss_conf             6999904789999999999977996399999956688766-78899889999999999986997899787998--75899


Q ss_pred             CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCEEECCCCCCCCCC------------CCCCCHHHHHHHHH
Q ss_conf             32220110001233101111111223337777774-339936511454444345------------55443024777776
Q gi|254781031|r   90 LTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAY-RLGITNIVIGVCETDYSG------------YPDCRHDTIRAIET  156 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~g~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~  156 (240)
                      ...-......+..+.-....++..- +......|. .+|++.+++|.-+.-...            .+|.+-+.      
T Consensus        79 i~~fv~~Y~~G~TPNPcv~CN~~IK-Fg~l~~~A~~~lGad~iATGHYAri~~~~~~~~L~r~~D~~KDQSYfL------  151 (354)
T pfam03054        79 FEPFLDEYKNGRTPNPDILCNREIK-FGALLDYAKQVLGADYLATGHYARVSLNENESELLRGKDKNKDQSYFL------  151 (354)
T ss_pred             HHHHHHHHHCCCCCCCCHHHCCCCC-HHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEE------
T ss_conf             9999999976999984144189643-899999999866998104474289990499389998999999801786------


Q ss_pred             HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             7753064321677531389889999999982820
Q gi|254781031|r  157 AINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQ  190 (240)
Q Consensus       157 ~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~  190 (240)
                       ....+..--++..|+-.++|.||.++++++|..
T Consensus       152 -~~l~q~~L~~~lFPLG~~~K~eVR~iA~~~gL~  184 (354)
T pfam03054       152 -SGLSQEQLEKLLFPLGDLTKEEVRKIAKEAGLP  184 (354)
T ss_pred             -ECCCHHHHHHEECCCCCCCHHHHHHHHHHCCCC
T ss_conf             -107898764318287688528999999976998


No 19 
>PRK00509 argininosuccinate synthase; Provisional
Probab=99.24  E-value=4.2e-10  Score=81.72  Aligned_cols=160  Identities=17%  Similarity=0.074  Sum_probs=87.0

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCC
Q ss_conf             5994899980965699999999974-983999997677887772799999999999998887520356158750110322
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDR-FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDI   85 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~-~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (240)
                      +.+|+|++||||||+++++.||.++ |++|++++.|.||..  +.+..       .+.+.....  ...++++....-..
T Consensus         1 m~kKVvLAySGGLDTSv~l~wL~e~yg~eVia~~~d~Gq~~--d~~~i-------~~kA~~~GA--~~~~v~D~r~ef~~   69 (398)
T PRK00509          1 MVKKVVLAYSGGLDTSVIIKWLKEEYGCEVVAFTADVGQGE--ELEPI-------REKALASGA--SEIYVEDLREEFVR   69 (398)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEECCCHH--HHHHH-------HHHHHHHCC--CEEEEECCHHHHHH
T ss_conf             98549999089845999999998753988999999798877--88999-------999998299--78999630999999


Q ss_pred             CCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHH-HHHHHHHHHHHCCCC
Q ss_conf             4443322201100012331011111112233377777743399365114544443455544302-477777677530643
Q gi|254781031|r   86 SHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHD-TIRAIETAINLGMES  164 (240)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  164 (240)
                      ..-.........+....+  ...+..-..........|...|++.+..|...-      .+-+. |...+.     ....
T Consensus        70 ~~i~p~I~ana~Yeg~Yp--L~tslaRplia~~~ve~A~~~ga~aiaHG~TGk------GNDQvRFe~~~~-----aL~P  136 (398)
T PRK00509         70 DYVFPAIRANALYEGKYP--LGTALARPLIAKKLVEIARKEGADAVAHGCTGK------GNDQVRFELAIA-----ALAP  136 (398)
T ss_pred             HHHHHHHHCCCCCCCCEE--EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCC------CCCHHHHHHHHH-----HHCC
T ss_conf             999999960854558545--522031889999999999971985998545567------860899999999-----8599


Q ss_pred             CEEEEEEECC---CCHHHHHHHHHHHCCC
Q ss_conf             2167753138---9889999999982820
Q gi|254781031|r  165 HVTVHTPLMW---LKKYETWKLAQDIGGQ  190 (240)
Q Consensus       165 ~~~i~~P~~~---~tK~eI~~~~~~~~~~  190 (240)
                      .++|++|+..   ++..|.++.+++.|.+
T Consensus       137 ~l~iiaP~Rd~~~~sR~~~i~ya~~~gIp  165 (398)
T PRK00509        137 DLKVIAPWREWDLMSREELIAYAEEHGIP  165 (398)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf             97686113213416899999999986998


No 20 
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase; InterPro: IPR012795   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=99.23  E-value=1.9e-10  Score=83.81  Aligned_cols=164  Identities=18%  Similarity=0.132  Sum_probs=92.6

Q ss_pred             CEEEEEECCHHHHHHHHHHHHC----CCE-------EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             4899980965699999999974----983-------99999767788777279999999999999888752035615875
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDR----FDR-------VETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILP   78 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~----~~~-------v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   78 (240)
                      +.||.+|||+||+++++.|.+-    +.+       +.++|+|++-|..+..+.+.    .+...+.+.   ..+.+...
T Consensus         1 ~~lvAvSGG~DS~aLL~~L~~~~~~~~~~~~~~~~~~~a~h~nH~lR~~s~~~~~~----~v~~~c~~~---~~~~~~~~   73 (204)
T TIGR02432         1 KILVAVSGGVDSMALLHLLLKLQPKLKISWQIKDFKLIAAHVNHGLRPESAQEEAE----FVQQFCEKL---NIPLEIKK   73 (204)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHH----HHHHHHHHC---CCCEEEEE
T ss_conf             97888628642799999999976632787788750689999617788415899999----999999961---89569984


Q ss_pred             CHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCCC------CCCCCHHHH
Q ss_conf             0110322444332220110001233101111111223337777774339-936511454444345------554430247
Q gi|254781031|r   79 LAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLG-ITNIVIGVCETDYSG------YPDCRHDTI  151 (240)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g-~~~i~~~~~~~~~~~------~~~~~~~~~  151 (240)
                      ............          ........-.|...+    ...+..+| +..|.++.+.+|..-      .+.+...-.
T Consensus        74 ~~~~~~~~~~~~----------~~~E~~AR~~RY~~f----~~~~~~~~~~~~i~tAHh~dDq~ET~L~rL~RG~~~~Gl  139 (204)
T TIGR02432        74 LVDVKALAKGKK----------KNLEEAAREARYAFF----EEIAKKHGKADYILTAHHADDQAETILMRLLRGSGLRGL  139 (204)
T ss_pred             EECCCCCCCCCC----------CCHHHHHHHHHHHHH----HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHH
T ss_conf             212411012247----------677899999999999----999997299408997248322799999987516870001


Q ss_pred             HHHHHHHHHC---CCCCEEEEEEECCCCHHHHHHHHHHHCCCHHCC
Q ss_conf             7777677530---643216775313898899999999828200014
Q gi|254781031|r  152 RAIETAINLG---MESHVTVHTPLMWLKKYETWKLAQDIGGQDLVN  194 (240)
Q Consensus       152 ~~~~~~~~~~---~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~~~~  194 (240)
                      ..+..+-..+   ......+++|++..+|.||.+.+++.+.+...|
T Consensus       140 ~g~~~~~~~~~~g~~~~~~~~RPLL~~~k~ei~~y~~~~~l~~~eD  185 (204)
T TIGR02432       140 SGMPEIRPLGSLGWYKGGQIIRPLLNISKSEIEEYLKENGLPYFED  185 (204)
T ss_pred             HHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEC
T ss_conf             1101336633244225632770775677899999999668965657


No 21 
>PRK13820 argininosuccinate synthase; Provisional
Probab=99.22  E-value=5.5e-10  Score=80.96  Aligned_cols=158  Identities=15%  Similarity=0.061  Sum_probs=85.5

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHC-CC-EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCC
Q ss_conf             5994899980965699999999974-98-399999767788777279999999999999888752035615875011032
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDR-FD-RVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGD   84 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~-~~-~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (240)
                      ++||+|++||||||+++++.||.++ |+ +|++++.|.||..   ++... +.++    ..   ......++++....-.
T Consensus         2 ~~kKVvLAySGGLDTSv~l~wL~e~yg~~eVi~~~~d~Gq~~---e~~~~-~~~k----A~---~~G~~~~viD~r~ef~   70 (395)
T PRK13820          2 MKKKVVLAYSGGLDTSVCIPLLKEKYGYDEVITVAVDVGQPE---EEIKE-AEEK----AK---KLGVKHYTIDAKEEFA   70 (395)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCH---HHHHH-HHHH----HH---HCCCCEEEEECHHHHH
T ss_conf             987299996898489999999998519986999999899976---77699-9999----99---7099499981699999


Q ss_pred             CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             24443322201100012331011111112233377777743399365114544443455544302477777677530643
Q gi|254781031|r   85 ISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMES  164 (240)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (240)
                      ...-.........+..   .....+..-..........|...|+..+..|...-+.     ..-+|...+    .   -.
T Consensus        71 ~~~i~paI~ana~Yeg---YpL~tslaRplia~~~v~~A~~~ga~aiaHG~TGkGN-----DQvRFe~~~----~---ap  135 (395)
T PRK13820         71 KDYIFPAIKANALYEG---YPLGTALARPLIAKKIVEVAKKEGASAIAHGCTGKGN-----DQLRFEAVF----R---AT  135 (395)
T ss_pred             HHHHHHHHHCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC-----HHHHHHHHH----H---CC
T ss_conf             9999999970873267---3032410468999999999997598298307778987-----099999998----6---78


Q ss_pred             CEEEEEEECC--CCHHHHHHHHHHHCCC
Q ss_conf             2167753138--9889999999982820
Q gi|254781031|r  165 HVTVHTPLMW--LKKYETWKLAQDIGGQ  190 (240)
Q Consensus       165 ~~~i~~P~~~--~tK~eI~~~~~~~~~~  190 (240)
                      .++|++|+..  ++..|.++.+++.|.+
T Consensus       136 ~~~iiaP~R~~~~~R~~~i~ya~~~gI~  163 (395)
T PRK13820        136 DLDVIAPIRELNLTREWEIEYAKEHGIP  163 (395)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf             9868721045334589999999985998


No 22 
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21  E-value=4.7e-10  Score=81.39  Aligned_cols=157  Identities=18%  Similarity=0.101  Sum_probs=88.4

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHCC--CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCC
Q ss_conf             9948999809656999999999749--83999997677887772799999999999998887520356158750110322
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDRF--DRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDI   85 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~~--~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (240)
                      ..++++.+|||.||+++|+.|++.+  .++.++|+|.|++.....+  ...++.+.   ...   ..+..+......-..
T Consensus        21 ~~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd~~~~~~~~~~--~~~~~~~~---~~~---~~~~~v~~~~~~~~~   92 (298)
T COG0037          21 EYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQE--AELVEKLC---EKL---GIPLIVERVTDDLGR   92 (298)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHH--HHHHHHHH---HHC---CCCEEEEEHHHHHHH
T ss_conf             7858999378789999999999842257389999708988643289--99999999---964---998488620454310


Q ss_pred             CCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC------CCCCHHHHHHHHHHHH
Q ss_conf             4443322201100012331011111112233377777743399365114544443455------5443024777776775
Q gi|254781031|r   86 SHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGY------PDCRHDTIRAIETAIN  159 (240)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  159 (240)
                      .  ...        ........    ....-......+...|++.|++|.+.+|...+      +.........+..   
T Consensus        93 ~--~~~--------~~~~c~~c----~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et~lm~l~~g~~~~~l~~~~~---  155 (298)
T COG0037          93 E--TLD--------GKSICAAC----RRLRRGLLYKIAKELGADKIATGHHLDDQAETFLMNLLRGSGLRGLRGMPP---  155 (298)
T ss_pred             C--CCC--------CCCHHHHH----HHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCC---
T ss_conf             0--246--------76787999----999999999999985999898567846899999999861752245640885---


Q ss_pred             HCCCCCE-EEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             3064321-67753138988999999998282
Q gi|254781031|r  160 LGMESHV-TVHTPLMWLKKYETWKLAQDIGG  189 (240)
Q Consensus       160 ~~~~~~~-~i~~P~~~~tK~eI~~~~~~~~~  189 (240)
                      ....... .+++|++..++.||...+...+.
T Consensus       156 ~~~~~~~~~~iRPL~~~~~~ei~~~~~~~~l  186 (298)
T COG0037         156 KRPFEGGLLIIRPLLYVREKEIELYAKEKGL  186 (298)
T ss_pred             CCCCCCCCEEECCCCCCCHHHHHHHHHHCCC
T ss_conf             2445788645475746889999999997599


No 23 
>pfam01171 ATP_bind_3 PP-loop family. This family of proteins belongs to the PP-loop superfamily.
Probab=99.20  E-value=2.5e-10  Score=83.05  Aligned_cols=151  Identities=17%  Similarity=0.104  Sum_probs=85.4

Q ss_pred             CEEEEEECCHHHHHHHHHHHH----CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCC
Q ss_conf             489998096569999999997----4983999997677887772799999999999998887520356158750110322
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALD----RFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDI   85 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~----~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (240)
                      |.+|.+|||.||+++++.|.+    .+.++.++|+|+|.+..+..+. . .   +...+..   ...+.++...... ..
T Consensus         1 ki~vavSGG~DS~~Ll~~l~~~~~~~~~~~~~~hvnh~lr~~s~~~~-~-~---v~~~~~~---~~i~~~i~~~~~~-~~   71 (182)
T pfam01171         1 KILVAVSGGPDSMALLYLLKKLKPKFGIDLTAAHVDHGLREESDREA-Q-F---VKELCRQ---LNIPLEVLRVDVA-KK   71 (182)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHH-H-H---HHHHHHH---CCCCEEEEEEECC-CC
T ss_conf             99999678599999999999999975997899998799865405899-9-9---9999998---5997599997347-66


Q ss_pred             CCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHH---------H
Q ss_conf             4443322201100012331011111112233377777743399365114544443455544302477777---------6
Q gi|254781031|r   86 SHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIE---------T  156 (240)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~  156 (240)
                          ....         ........|.    ......+...|+..+++|.+.+|..-      .++..+.         .
T Consensus        72 ----~~~~---------~e~~aR~~Ry----~~l~~~a~~~~~~~i~lgHh~DD~~E------T~lm~l~rG~~~~gl~g  128 (182)
T pfam01171        72 ----SGLN---------LEEAAREARY----DFFEEIAKKNGAEVLLTAHHADDQAE------TFLMRLLRGSGLAGLAG  128 (182)
T ss_pred             ----CCCC---------HHHHHHHHHH----HHHHHHHHHHCCCEEEEECCCCHHHH------HHHHHHHCCCCCCCCCC
T ss_conf             ----7877---------7578999999----99999898617664887434232999------99999972898110338


Q ss_pred             HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHH
Q ss_conf             775306432167753138988999999998282000
Q gi|254781031|r  157 AINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQDL  192 (240)
Q Consensus       157 ~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~~  192 (240)
                      +-......++++++|++..+|.||.+.+...+.+..
T Consensus       129 m~~~~~~~~~~iiRPLl~~~k~ei~~~a~~~~l~~~  164 (182)
T pfam01171       129 IAPVRPLAGGRIVRPLLKVTKSEIEEYLKEHGIPWV  164 (182)
T ss_pred             CCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCEE
T ss_conf             875134689438702114889999999998699368


No 24 
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.18  E-value=2.2e-10  Score=83.39  Aligned_cols=153  Identities=19%  Similarity=0.168  Sum_probs=94.6

Q ss_pred             CHHHCCCCCEEEEEECCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECH
Q ss_conf             122135994899980965699999999974-9839999976778877727999999999999988875203561587501
Q gi|254781031|r    2 NDIIKKAPSALLLFSGGQDSSTCLSWALDR-FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLA   80 (240)
Q Consensus         2 ~~~~~~~~~av~l~SGGlDS~~~l~~l~~~-~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (240)
                      +..||..+++++.||||+||+++|+.+.+. |.++.++|++...-.+.+.+-+...+++          ....+.+++..
T Consensus        11 ~~~ik~~~kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~----------iGi~H~~i~~~   80 (269)
T COG1606          11 KKAIKEKKKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKE----------IGIRHEFIKMN   80 (269)
T ss_pred             HHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHH----------HCCCCEEEEHH
T ss_conf             99986437399996588427999999999735646999971687776660678999999----------48762465500


Q ss_pred             HHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             10322444332220110001233101111111223337777774339936511454444345554430247777767753
Q gi|254781031|r   81 ILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINL  160 (240)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (240)
                      -+. ..             ..........+..-...+.....+...|.+.+..|....|...++.   ...     +..+
T Consensus        81 ~~~-~~-------------~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~RP---G~r-----A~kE  138 (269)
T COG1606          81 RMD-PE-------------FKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDYRP---GLR-----ALKE  138 (269)
T ss_pred             HCC-HH-------------HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCC---CHH-----HHHH
T ss_conf             025-23-------------3049987355778999999999999739988974775787337883---023-----5776


Q ss_pred             CCCCCEEEEEEE--CCCCHHHHHHHHHHHCCCH
Q ss_conf             064321677531--3898899999999828200
Q gi|254781031|r  161 GMESHVTVHTPL--MWLKKYETWKLAQDIGGQD  191 (240)
Q Consensus       161 ~~~~~~~i~~P~--~~~tK~eI~~~~~~~~~~~  191 (240)
                           ..|..||  .++||.||.+.+..+|...
T Consensus       139 -----~gi~sPl~e~gitk~eIre~a~~lgl~~  166 (269)
T COG1606         139 -----LGIRSPLAEFGITKKEIREIAKSLGLPT  166 (269)
T ss_pred             -----CCCCCHHHHHCCCHHHHHHHHHHCCCCC
T ss_conf             -----0777718883975999999999759984


No 25 
>TIGR00032 argG argininosuccinate synthase; InterPro: IPR001518   Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate , .   In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation.   AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process.
Probab=99.16  E-value=5.2e-10  Score=81.13  Aligned_cols=161  Identities=15%  Similarity=0.137  Sum_probs=94.9

Q ss_pred             CEEEEEECCHHHHHHHHHHHHC-CC-EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCC
Q ss_conf             4899980965699999999974-98-399999767788777279999999999999888752035615875011032244
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDR-FD-RVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISH   87 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~-~~-~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (240)
                      |+|+.||||||.++++.||.++ |+ +|++++.|-||.-+.+.+.+..-+.++....+         ..|+-.  .+...
T Consensus         1 KVvLAySGGLDTSv~l~wL~~kyG~~~Via~~~dvGQPDE~d~~~~~~kA~~~GA~~~---------~~iDak--~eFv~   69 (420)
T TIGR00032         1 KVVLAYSGGLDTSVCLKWLEEKYGYEEVIAVTADVGQPDEEDIDAIEEKALKYGAEKH---------YTIDAK--EEFVK   69 (420)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEE---------EEEECH--HHHHH
T ss_conf             9688860702599999998865289860799975679998888889999887367102---------577236--88999


Q ss_pred             C--CCCCCHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             4--332220110001--233101111111223337777774339936511454444345554430247777767753064
Q gi|254781031|r   88 S--SLTKNVAMKIQD--NNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGME  163 (240)
Q Consensus        88 ~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (240)
                      .  ....+....+..  ........+..-+.........|...|+.++..|-.      .+.+=+..+...   + ...-
T Consensus        70 dy~f~aiqanA~Ye~~GG~~Y~L~TaLaRPlIA~~lVe~Ak~~Ga~AvaHGCT------GKGNDQ~RFe~~---~-~~~~  139 (420)
T TIGR00032        70 DYLFAAIQANAVYEGTGGLVYPLSTALARPLIAKKLVEVAKKEGAEAVAHGCT------GKGNDQVRFERS---I-RALN  139 (420)
T ss_pred             HHHHHHHHCCCEECCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC------CCCCCHHHHHHH---H-HHHC
T ss_conf             99888765066031787410347661145799999999984669549870768------777413576588---8-7526


Q ss_pred             CCEEEEEEE--CCCC-----HHHHHHHHHHHCCCH
Q ss_conf             321677531--3898-----899999999828200
Q gi|254781031|r  164 SHVTVHTPL--MWLK-----KYETWKLAQDIGGQD  191 (240)
Q Consensus       164 ~~~~i~~P~--~~~t-----K~eI~~~~~~~~~~~  191 (240)
                      .+++|++|.  ++++     ..|.++.+.+.|-+.
T Consensus       140 p~LkviaP~R~~~~~e~lgGR~e~~eYa~~~Gip~  174 (420)
T TIGR00032       140 PDLKVIAPWRDLNLTEELGGREEEIEYAAQKGIPV  174 (420)
T ss_pred             CCCEEECCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf             89858747346467764059488999999668887


No 26 
>PRK04527 argininosuccinate synthase; Provisional
Probab=99.14  E-value=7e-10  Score=80.31  Aligned_cols=156  Identities=18%  Similarity=0.123  Sum_probs=81.7

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCEEEECH--HHCC
Q ss_conf             99489998096569999999997498399999767788777279999999999999888752035-61587501--1032
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLG-EDHILPLA--ILGD   84 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~   84 (240)
                      +||+|+.||||||+++++-||+++|++|++++.|.||...-+.+....-+.+          ... ...+++..  +...
T Consensus         3 ~kkVvLAySGGLDTSv~l~wL~e~g~~Vi~~~ad~G~~~~e~~~~i~~kA~~----------~GA~~~~v~D~~~ef~~~   72 (397)
T PRK04527          3 TKDIVLAFSGGLDTSFCIPYLQERGYAVHTVFADTGGVDAEERDFIEKRAAE----------LGAASHVTVDGGPAIWEG   72 (397)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHH----------HCCCEEEEECCHHHHHHH
T ss_conf             8759999089728999999998759947999997899861515789999998----------199779997289999999


Q ss_pred             CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             24443322201100012331011111112233377777743399365114544443455544302477777677530643
Q gi|254781031|r   85 ISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMES  164 (240)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (240)
                      ......  .....+....+  .....| ..+.....-.|...|+..+..|...-+-     ..-+|......     .. 
T Consensus        73 ~v~~~i--~ana~Yeg~Yp--L~tsaR-plIak~~ve~A~~~ga~~iaHG~TGkGN-----DQvRFe~~~~a-----l~-  136 (397)
T PRK04527         73 FVKPFV--WAGEGYQGQYP--LLVSDR-YLIVDAALKRAEELGTRIIAHGCTGMGN-----DQVRFDLAVKA-----LG-  136 (397)
T ss_pred             HHHHHH--HHCHHHCCCCC--CCCCHH-HHHHHHHHHHHHHCCCEEEECCCCCCCC-----CHHHHHHHHHH-----CC-
T ss_conf             999998--60645418555--632107-9999999999997298384047666787-----02567768886-----36-


Q ss_pred             CEEEEEEEC------CCCHHHHHHHHHHHCC
Q ss_conf             216775313------8988999999998282
Q gi|254781031|r  165 HVTVHTPLM------WLKKYETWKLAQDIGG  189 (240)
Q Consensus       165 ~~~i~~P~~------~~tK~eI~~~~~~~~~  189 (240)
                      .++|++|+.      +.+..+.++.+++.+.
T Consensus       137 ~~~viAP~R~~~~~~~~~R~~~~~ya~~~gi  167 (397)
T PRK04527        137 DYQIVAPIREIQKEHTQTRAYEQKYLEERGF  167 (397)
T ss_pred             CCCCCCCHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf             7654365565310222029999976786499


No 27 
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This domain has  a strongly conserved motif SGGXD at the N terminus.
Probab=99.14  E-value=3.9e-10  Score=81.89  Aligned_cols=151  Identities=19%  Similarity=0.087  Sum_probs=83.7

Q ss_pred             CEEEEEECCHHHHHHHHHHHH----CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCC
Q ss_conf             489998096569999999997----4983999997677887772799999999999998887520356158750110322
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALD----RFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDI   85 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~----~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (240)
                      |.++.+|||.||+++++.|.+    .+.++.++|+|+|.+..+..+. .    .+...+.   ....+.++........ 
T Consensus         1 ki~vavSGG~DS~~Ll~~l~~~~~~~~~~l~a~hvdh~lr~~s~~~~-~----~v~~~~~---~~~i~~~i~~~~~~~~-   71 (185)
T cd01992           1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEA-A----FVADLCA---KLGIPLYILVVALAPK-   71 (185)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHH-H----HHHHHHH---HCCCCEEEEEEEECCC-
T ss_conf             99999678499999999999999974994899998189888888999-9----9999999---8599889999775367-


Q ss_pred             CCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHH--------HHH
Q ss_conf             444332220110001233101111111223337777774339936511454444345554430247777--------767
Q gi|254781031|r   86 SHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAI--------ETA  157 (240)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~  157 (240)
                          .....         .......|.    ......+...++..+++|.+.+|..-+     .++...        ..+
T Consensus        72 ----~~~~~---------e~~aR~~Ry----~~l~~~~~~~~~~~i~lgHh~dD~~ET-----~lm~l~rg~~~~gl~gm  129 (185)
T cd01992          72 ----PGGNL---------EAAAREARY----DFFAEIAKEHGADVLLTAHHADDQAET-----VLMRLLRGSGLRGLAGM  129 (185)
T ss_pred             ----CCCCH---------HHHHHHHHH----HHHHHHHHHHCCCCEEECCCHHHHHHH-----HHHHHHCCCCCCCCCCC
T ss_conf             ----89999---------999999999----999999987354504203630368999-----99998718996415277


Q ss_pred             HHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCH
Q ss_conf             7530643216775313898899999999828200
Q gi|254781031|r  158 INLGMESHVTVHTPLMWLKKYETWKLAQDIGGQD  191 (240)
Q Consensus       158 ~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~  191 (240)
                      -.......+.+++|++..+|.||.+.+.+.+.+.
T Consensus       130 ~~~~~~~~~~iiRPLL~~~k~ei~~~~~~~~i~~  163 (185)
T cd01992         130 PARIPFGGGRLIRPLLGITRAEIEAYLRENGLPW  163 (185)
T ss_pred             CCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCE
T ss_conf             8413579952871577853999999999849956


No 28 
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily   of proteins is predicted to  bind ATP. This domainhas  a strongly conserved motif SGGKD at the N terminus.
Probab=99.14  E-value=7.9e-10  Score=80.00  Aligned_cols=159  Identities=19%  Similarity=0.064  Sum_probs=82.7

Q ss_pred             CEEEEEECCHHHHHHHHHHHHC------CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHC
Q ss_conf             4899980965699999999974------9839999976778877727999999999999988875203561587501103
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDR------FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILG   83 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~------~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (240)
                      |.||.+|||.||++++++|.+-      +.++.++|+|+|.+..+..+. . .+   .......   ..+.+.+......
T Consensus         1 kilva~SGG~DS~~Ll~ll~~~~~~~~~~~~l~~~hvnh~~r~~s~~~~-~-~v---~~~~~~~---~i~~~~~~~~~~~   72 (185)
T cd01993           1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESL-E-VV---ERLAEEL---GIELEIVSFKEEY   72 (185)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHH-H-HH---HHHHHHC---CCCEEEEEEEECC
T ss_conf             9899965849999999999998886488956999995699888889999-9-99---9989962---9935998764036


Q ss_pred             CCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHH-HH-----H
Q ss_conf             22444332220110001233101111111223337777774339936511454444345554430247777-76-----7
Q gi|254781031|r   84 DISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAI-ET-----A  157 (240)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~-----~  157 (240)
                            ...................-.|..    .....+...+++.+++|.+.+|..-      .+...+ ..     +
T Consensus        73 ------~~~~~~~~~~~~~~c~~c~r~Rr~----~l~~~~~~~~~~~i~~gHh~dD~~E------T~l~~l~rg~~~~~~  136 (185)
T cd01993          73 ------TDDIEVKKRGGKSPCSLCGVLRRG----LLNKIAKELGADKLATGHNLDDEAE------TLLMNLLRGGILRLM  136 (185)
T ss_pred             ------CCCHHHHHHHHCCHHHHHHHHHHH----HHHHHHHHCCCCEEEEECCHHHHHH------HHHHHHHCCCCHHHC
T ss_conf             ------763899998640634689999999----9999999819988975330768999------999999848970005


Q ss_pred             ----HHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHH
Q ss_conf             ----75306432167753138988999999998282000
Q gi|254781031|r  158 ----INLGMESHVTVHTPLMWLKKYETWKLAQDIGGQDL  192 (240)
Q Consensus       158 ----~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~~  192 (240)
                          ........+++++|++..+|.||.+.+.+.+.+..
T Consensus       137 ~~~~~~~~~~~~i~iiRPLL~~~k~ei~~y~~~~~l~~~  175 (185)
T cd01993         137 RPGPILYLDEGDVTRIRPLVYVREKEIVLYAELNGLPFV  175 (185)
T ss_pred             CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEE
T ss_conf             676633356898479954988989999999998799878


No 29 
>TIGR00268 TIGR00268 conserved hypothetical protein TIGR00268; InterPro: IPR005232   This family of conserved hypothetical proteins has no known function but is predicted to be part of the wider PP-loop superfamily ..
Probab=99.12  E-value=8.4e-10  Score=79.81  Aligned_cols=164  Identities=18%  Similarity=0.148  Sum_probs=104.4

Q ss_pred             CHHHCC---CCCEEEEEECCHHHHHHHHHHHH-CCCEEEEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             122135---99489998096569999999997-49839999976778877-72799999999999998887520356158
Q gi|254781031|r    2 NDIIKK---APSALLLFSGGQDSSTCLSWALD-RFDRVETLSFDYGQRNK-VELECRLCVRKKIVELMPKWKDSLGEDHI   76 (240)
Q Consensus         2 ~~~~~~---~~~av~l~SGGlDS~~~l~~l~~-~~~~v~~i~~~ygq~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   76 (240)
                      +..++.   ++++|+.||||+||++++..+.+ .|.++.+||+-.=+-.+ -+.+-|...          +......+..
T Consensus         6 ~~fl~~kf~nk~~~IAySGGvDS~lla~v~~~v~g~~~lait~~sP~~sp~~el~~A~~~----------A~~~g~~he~   75 (263)
T TIGR00268         6 RNFLKEKFKNKKVLIAYSGGVDSSLLAAVCSDVAGTEVLAITVVSPSISPRRELEDAKAI----------AKEIGVKHEL   75 (263)
T ss_pred             HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHH----------HHHHCCCEEE
T ss_conf             889876764081699951746589999999875310113578762775735448999999----------9880830121


Q ss_pred             EECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             75011032244433222011000123310111111122333777777433993651145444434555443024777776
Q gi|254781031|r   77 LPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIET  156 (240)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  156 (240)
                      +....+...             ....-.....++..-.++......+...|.+.+.-|...+|-..++..-.    +   
T Consensus        76 ~~~d~~~n~-------------~f~~N~~~RCY~CK~~~~~~L~~~a~~~gy~~V~dGtN~dDL~~~RPG~~----A---  135 (263)
T TIGR00268        76 VKIDKMANP-------------NFRANVEERCYFCKKKVLSILVKLAEKRGYDVVVDGTNADDLEDHRPGLR----A---  135 (263)
T ss_pred             ECCCCCCCC-------------CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHH----H---
T ss_conf             100123685-------------00168854441548889999899998639957982346200023675135----6---


Q ss_pred             HHHHCCCCCEEEEEEE--CCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCC
Q ss_conf             7753064321677531--38988999999998282000143255372162
Q gi|254781031|r  157 AINLGMESHVTVHTPL--MWLKKYETWKLAQDIGGQDLVNLILEESHTCY  204 (240)
Q Consensus       157 ~~~~~~~~~~~i~~P~--~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~  204 (240)
                       ..+..+    ...||  ...||.||.+.++.+| ....+-|   +.+|-
T Consensus       136 -~~E~~g----~~SP~aef~I~K~eir~ia~~lg-~~~~DKP---~~~CL  176 (263)
T TIGR00268       136 -VKELNG----VYSPWAEFGITKKEIREIAKSLG-LSFYDKP---SEACL  176 (263)
T ss_pred             -HHHCCC----CCCCCCCCCCCHHHHHHHHHHCC-CCCCCCC---CCCHH
T ss_conf             -766078----86872002568799999999748-8988886---62102


No 30 
>pfam00764 Arginosuc_synth Arginosuccinate synthase. This family contains a PP-loop motif.
Probab=99.11  E-value=2e-09  Score=77.51  Aligned_cols=157  Identities=15%  Similarity=0.153  Sum_probs=83.8

Q ss_pred             EEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCCCC
Q ss_conf             99980965699999999974983999997677887772799999999999998887520356158750110322444332
Q gi|254781031|r   12 LLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHSSLT   91 (240)
Q Consensus        12 v~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (240)
                      |+.||||||+++++.||++++++|++++.|.||..+ +.+....-+.++.       .  ...++++....-....-...
T Consensus         1 VLAySGGLDTSv~l~wL~e~~~eVia~~~d~Gq~~e-d~~~i~~kA~~~G-------A--~~~~v~D~r~ef~~~~i~p~   70 (389)
T pfam00764         1 VLAYSGGLDTSVCIPWLKEKYYEVIAVAVDVGQGEE-DLDEAREKALKLG-------A--VKHYVIDAKEEFVEDYIFPA   70 (389)
T ss_pred             CEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCHH-HHHHHHHHHHHHC-------C--CEEEEECCHHHHHHHHHHHH
T ss_conf             960367628999999999709928999997999778-7899999999829-------9--78999737999999989999


Q ss_pred             CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             22011000123310111111122333777777433993651145444434555443024777776775306432167753
Q gi|254781031|r   92 KNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTP  171 (240)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P  171 (240)
                      ......+.+.  .....+..-..........|...|++.+..|...-+-.     --+|...+.     .....++|++|
T Consensus        71 i~ana~Yeg~--Y~L~tslaRplia~~~v~~A~~~ga~aiaHG~TGkGND-----QvRFe~~~~-----aL~P~l~iiaP  138 (389)
T pfam00764        71 IKANALYEGR--YPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGND-----QVRFELSIR-----SLAPDLKVIAP  138 (389)
T ss_pred             HHCCCCCCCC--EEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC-----HHHHHHHHH-----HHCCCCEEECC
T ss_conf             9668674464--78524321669999999998763976994366679974-----535478899-----74999758545


Q ss_pred             E--CCCCHHHHHHHHHHHCCC
Q ss_conf             1--389889999999982820
Q gi|254781031|r  172 L--MWLKKYETWKLAQDIGGQ  190 (240)
Q Consensus       172 ~--~~~tK~eI~~~~~~~~~~  190 (240)
                      +  ..++..+.++.+++.|.+
T Consensus       139 ~R~~~~sR~~~i~ya~~~gI~  159 (389)
T pfam00764       139 VRDLNLTREEEIEYAKEKGIP  159 (389)
T ss_pred             CCCCCCCHHHHHHHHHHCCCC
T ss_conf             245320579999999985998


No 31 
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=99.10  E-value=1.3e-09  Score=78.70  Aligned_cols=165  Identities=15%  Similarity=0.085  Sum_probs=91.3

Q ss_pred             HCCCCCEEEEEECCHHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CEEEECHHH
Q ss_conf             1359948999809656999999999749-83999997677887772799999999999998887520356-158750110
Q gi|254781031|r    5 IKKAPSALLLFSGGQDSSTCLSWALDRF-DRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGE-DHILPLAIL   82 (240)
Q Consensus         5 ~~~~~~av~l~SGGlDS~~~l~~l~~~~-~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   82 (240)
                      |...+|+|+.||||||.++++-||.+++ ++|++++.|.||. ..+.+.+..-+..          .... .++++...-
T Consensus         1 ~~~~kkvvLAYSGGLDTSv~i~wL~e~~~~eVit~tadvGQ~-eed~~~i~eKA~~----------~Ga~~~~viD~ree   69 (403)
T COG0137           1 MMKVKKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQP-EEDLDAIREKALE----------LGAEEAYVIDAREE   69 (403)
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCC-HHHHHHHHHHHHH----------HCCCEEEEEECHHH
T ss_conf             987767999954882399999999976594699999758997-5775799999998----------18852899643899


Q ss_pred             CCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             32244433222011000123310111111122333777777433993651145444434555443024777776775306
Q gi|254781031|r   83 GDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGM  162 (240)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (240)
                      -....-.........+...  .....+..-..........|...|+..+..|...-+-..-     +|....     ...
T Consensus        70 Fv~~yi~~~i~ana~Yeg~--YpL~TalaRPLIak~lVe~A~k~Ga~avaHGcTGKGNDQv-----RFE~~~-----~al  137 (403)
T COG0137          70 FVEDYIFPAIKANALYEGV--YPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQV-----RFELAI-----LAL  137 (403)
T ss_pred             HHHHHHHHHHHHHCEEECC--CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEE-----EEEEEH-----HHH
T ss_conf             9999999999730512156--4145434677999999999997199699746788887535-----432004-----541


Q ss_pred             CCCEEEEEEE--CCCCHHHHHHHHHHHCCCHH
Q ss_conf             4321677531--38988999999998282000
Q gi|254781031|r  163 ESHVTVHTPL--MWLKKYETWKLAQDIGGQDL  192 (240)
Q Consensus       163 ~~~~~i~~P~--~~~tK~eI~~~~~~~~~~~~  192 (240)
                      ..+++|++|.  .+++..+.++.+++.|.+..
T Consensus       138 ~pdlkiiAP~Rew~~~R~~~i~Ya~~~gipv~  169 (403)
T COG0137         138 NPDLKIIAPWREWNLTREEEIEYAEEHGIPVK  169 (403)
T ss_pred             CCCCEEEEEHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf             89967985633413376999999998499766


No 32 
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily   of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.10  E-value=1.1e-09  Score=79.22  Aligned_cols=153  Identities=25%  Similarity=0.256  Sum_probs=92.4

Q ss_pred             EEEEEECCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCC
Q ss_conf             899980965699999999974-9839999976778877727999999999999988875203561587501103224443
Q gi|254781031|r   11 ALLLFSGGQDSSTCLSWALDR-FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHSS   89 (240)
Q Consensus        11 av~l~SGGlDS~~~l~~l~~~-~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (240)
                      .+|.||||+||+++|+.+.+. |.++++||++.+--...+.+.+...++          .....+..++...+....   
T Consensus         1 V~vA~SGGVDSs~la~la~~alG~~v~aV~~~s~~~~~~E~e~a~~~a~----------~~gi~~~~i~~~~l~~~~---   67 (202)
T cd01990           1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELEEAKRLAK----------EIGIRHEVIETDELDDPE---   67 (202)
T ss_pred             CEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHH----------HCCCCEEEEECCHHHHHH---
T ss_conf             9898238599999999999976878799997279899789999999998----------639857997341110165---


Q ss_pred             CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             32220110001233101111111223337777774339936511454444345554430247777767753064321677
Q gi|254781031|r   90 LTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVH  169 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (240)
                      ...        .  ...........+.......+...|...+..|...+|...++..   . .+..         ...|.
T Consensus        68 ~~~--------N--~~~RCy~CK~~l~~~l~~~a~~~g~~~v~dGtn~dDl~d~RPG---l-~A~~---------e~~v~  124 (202)
T cd01990          68 FAK--------N--PPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYRPG---L-KALR---------ELGVR  124 (202)
T ss_pred             HCC--------C--CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC---H-HHHH---------HCCCC
T ss_conf             545--------9--7556229989999999999996799789415757632355786---8-8998---------76998


Q ss_pred             EEECC--CCHHHHHHHHHHHCCCHHCCCCHHHCCCC
Q ss_conf             53138--98899999999828200014325537216
Q gi|254781031|r  170 TPLMW--LKKYETWKLAQDIGGQDLVNLILEESHTC  203 (240)
Q Consensus       170 ~P~~~--~tK~eI~~~~~~~~~~~~~~~~~~~T~SC  203 (240)
                      .|+..  ++|.||-++++++|.+. -+.|   +.+|
T Consensus       125 sPL~e~gl~K~eVR~la~~lgLp~-~~kp---~~~C  156 (202)
T cd01990         125 SPLAEAGLGKAEIRELARELGLPT-WDKP---AMAC  156 (202)
T ss_pred             CCHHHCCCCHHHHHHHHHHCCCCC-CCCC---CCCC
T ss_conf             852651978899999999839985-6689---9875


No 33 
>TIGR00884 guaA_Cterm GMP synthase, C-terminal domain; InterPro: IPR001674   The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations . GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains .; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process.
Probab=99.09  E-value=1.6e-09  Score=78.01  Aligned_cols=164  Identities=21%  Similarity=0.154  Sum_probs=107.2

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE--ECHHHC
Q ss_conf             5994899980965699999999974-9839999976778877727999999999999988875203561587--501103
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDR-FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHIL--PLAILG   83 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~-~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   83 (240)
                      -+.+|++.+|||+|||++|.++-+. |.+++|||+|.|=--.++.+.   +.+.+.+.      ...+...+  ...+++
T Consensus        15 GD~~vi~ALSGGVDSsV~A~L~hrAIGD~L~~vFVD~GLlR~gE~E~---V~~~F~~~------lg~nl~~VDA~e~FL~   85 (319)
T TIGR00884        15 GDAKVIIALSGGVDSSVAAVLLHRAIGDRLTCVFVDHGLLRKGEAER---VVKTFSDK------LGLNLVVVDAKERFLS   85 (319)
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHH---HHHHHHHH------HCCCCEEECCCHHHHH
T ss_conf             88468998108815899999998642276048982278887663789---99998753------0898278761079887


Q ss_pred             CCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC----CCEEECCCCCCCCCCC----CCCCHHHHHHHH
Q ss_conf             22444332220110001233101111111223337777774339----9365114544443455----544302477777
Q gi|254781031|r   84 DISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLG----ITNIVIGVCETDYSGY----PDCRHDTIRAIE  155 (240)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g----~~~i~~~~~~~~~~~~----~~~~~~~~~~~~  155 (240)
                      .+..-.             .++.-.-.-.-.|+.+..-.|..++    +..+.-|....|.--+    -......++..+
T Consensus        86 ~L~GV~-------------DPE~KRKIIG~~FI~VFE~~A~~~~~~~~a~yL~QGTlYPDvIES~~~kG~~~a~~IKsHH  152 (319)
T TIGR00884        86 ALKGVT-------------DPEEKRKIIGRVFIEVFEREAEKIGDKKKAEYLVQGTLYPDVIESASSKGTSGAATIKSHH  152 (319)
T ss_pred             HCCCCC-------------CCHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf             528898-------------7034131122566777888998507997799997343447464602304776476456310


Q ss_pred             HHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHH
Q ss_conf             6775306432167753138988999999998282000
Q gi|254781031|r  156 TAINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQDL  192 (240)
Q Consensus       156 ~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~~  192 (240)
                      |.-.+-....++++-|+..+=|-||-+++..||.+..
T Consensus       153 NVGGLP~~m~l~LvEPLR~LfKDEVR~lG~~LGlP~e  189 (319)
T TIGR00884       153 NVGGLPEDMKLKLVEPLRELFKDEVRKLGKELGLPEE  189 (319)
T ss_pred             CCCCCCCCCEEEEECCCHHCCHHHHHHHHHHCCCCHH
T ss_conf             6688854260258754023021789999987188679


No 34 
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate .  In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=99.07  E-value=6.5e-09  Score=74.33  Aligned_cols=157  Identities=17%  Similarity=0.132  Sum_probs=83.2

Q ss_pred             EEEEEECCHHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCC
Q ss_conf             8999809656999999999749-839999976778877727999999999999988875203561587501103224443
Q gi|254781031|r   11 ALLLFSGGQDSSTCLSWALDRF-DRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHSS   89 (240)
Q Consensus        11 av~l~SGGlDS~~~l~~l~~~~-~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (240)
                      +|++||||||+++++.||.+++ ++|++++.|.||... ..+.   +.++    .......  ..++++....-......
T Consensus         1 VvLAySGGLDTSv~l~wL~e~~~~eVia~~~d~Gq~~e-~~~~---i~~k----A~~~GA~--~~~v~D~r~ef~~~~i~   70 (385)
T cd01999           1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQPEE-EIEA---IEEK----ALKLGAK--KHVVVDLREEFVEDYIF   70 (385)
T ss_pred             CEEEECCCCHHHHHHHHHHHHCCCEEEEEEEECCCCHH-HHHH---HHHH----HHHHCCC--EEEEECHHHHHHHHHHH
T ss_conf             97997788179999999997459849999998999667-7789---9999----9981997--89996129999999999


Q ss_pred             CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHH-HHHHHHHHHHHCCCCCEEE
Q ss_conf             322201100012331011111112233377777743399365114544443455544302-4777776775306432167
Q gi|254781031|r   90 LTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHD-TIRAIETAINLGMESHVTV  168 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i  168 (240)
                      ........+..  ......+..-..........|...|+..+..|...-+      +-+. |....     .......+|
T Consensus        71 pai~ana~Yeg--~Y~L~tslaRplIak~~ve~A~~~ga~aiaHG~TGkG------NDQvRFe~~~-----~aL~P~l~i  137 (385)
T cd01999          71 PAIQANALYEG--TYPLGTALARPLIAKALVEVAKEEGADAVAHGCTGKG------NDQVRFELAF-----YALNPDLKI  137 (385)
T ss_pred             HHHHHCCCCCC--CEECCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCC------CCHHHHHHHH-----HHHCCCCEE
T ss_conf             99960864337--5321350157899999999999809849974566688------8406899999-----985999758


Q ss_pred             EEEECC---CCHHHHHHHHHHHCCC
Q ss_conf             753138---9889999999982820
Q gi|254781031|r  169 HTPLMW---LKKYETWKLAQDIGGQ  190 (240)
Q Consensus       169 ~~P~~~---~tK~eI~~~~~~~~~~  190 (240)
                      ++|+..   ++..|.++.+++.|.+
T Consensus       138 iAP~Rd~~~~sR~~~i~ya~~~gi~  162 (385)
T cd01999         138 IAPWRDWEFLSREEEIEYAEEHGIP  162 (385)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf             5147314448889999999985999


No 35 
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; InterPro: IPR004506 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (2.1.1.61 from EC) catalyses the addition of 5-methylaminomethyl-2-thiouridylate to tRNAs using S-adenosyl-L-methionine as a substrate and releasing S-adenosyl-L-homocysteine. The enzyme is cytoplasmic and is involved in tRNA processing.; GO: 0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=99.05  E-value=1.4e-09  Score=78.45  Aligned_cols=170  Identities=14%  Similarity=0.036  Sum_probs=105.3

Q ss_pred             CCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCH---------HHHHHHH-HHHHHHHHHHHHCCCCCEEEE
Q ss_conf             948999809656999999999749839999976778877727---------9999999-999999888752035615875
Q gi|254781031|r    9 PSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVEL---------ECRLCVR-KKIVELMPKWKDSLGEDHILP   78 (240)
Q Consensus         9 ~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~---------~~a~~~~-~~~~~~~~~~~~~~~~~~~~~   78 (240)
                      +|++|++|||+||++.||+|.++|++|..|++.-+.......         ..+.+.. +.+.+..+......++++.++
T Consensus         1 ~kv~VglSGGVDSSVsA~lL~~qg~~v~G~ylk~W~~~~~~d~~GH~~~N~~K~~C~~~~dl~~a~~ic~~LGi~l~~~n   80 (394)
T TIGR00420         1 KKVIVGLSGGVDSSVSAYLLKQQGYEVVGVYLKNWDEDEKNDILGHKKINENKSGCSSAEDLRDAQAICEKLGIPLEKVN   80 (394)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             94899806854789999999714965899987765124666644316562467788368879999999985598189855


Q ss_pred             CHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-C--CCCEEECCCCCCCC-CCCC----------
Q ss_conf             01103224443322201100012331011111112233377777743-3--99365114544443-4555----------
Q gi|254781031|r   79 LAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYR-L--GITNIVIGVCETDY-SGYP----------  144 (240)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~--g~~~i~~~~~~~~~-~~~~----------  144 (240)
                      +..  .++......-....-.+..+.-....++..-|-.. .-++.. .  |.+.+++|+-+.-. ....          
T Consensus        81 f~~--~Y~~~Vf~~~i~~y~~G~TPnPDi~CN~~iKFG~~-~e~~~~~~Gtg~~~~aTGHYAr~~q~~~~~~~~~L~~~~  157 (394)
T TIGR00420        81 FQK--EYWNKVFEPFIQEYKEGLTPNPDILCNKLIKFGLL-LEYAKQLLGTGNDKIATGHYARIAQEIENKSLFELLRAL  157 (394)
T ss_pred             HHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH-HHHHHHHCCCCCCEEECCHHHHHHHHHCCCCHHHHHCCC
T ss_conf             078--87888889999987367777862004712003789-999998528995434424476544342131014443046


Q ss_pred             ----CCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             ----44302477777677530643216775313898899999999828
Q gi|254781031|r  145 ----DCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQDIG  188 (240)
Q Consensus       145 ----~~~~~~~~~~~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~  188 (240)
                          |- ..|...+....      =-.++.|+..++|.+|-++|.+.+
T Consensus       158 D~~KDQ-SYFL~~l~~~~------~~~~~FPlG~L~K~~vR~iA~~~~  198 (394)
T TIGR00420       158 DKNKDQ-SYFLYHLSQEQ------LAKLLFPLGELLKPEVRQIAKNAG  198 (394)
T ss_pred             CCCCCC-HHHHHHHHHHH------HHHHCCCCCCCCCHHHHHHHHHCC
T ss_conf             788861-17376401898------887505301036778999998648


No 36 
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=99.05  E-value=1.7e-09  Score=77.89  Aligned_cols=159  Identities=13%  Similarity=0.030  Sum_probs=83.5

Q ss_pred             CHHHCCCCCEEEEEECCHHHHHHHHHHH---HC--CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             1221359948999809656999999999---74--983999997677887772799999999999998887520356158
Q gi|254781031|r    2 NDIIKKAPSALLLFSGGQDSSTCLSWAL---DR--FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHI   76 (240)
Q Consensus         2 ~~~~~~~~~av~l~SGGlDS~~~l~~l~---~~--~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   76 (240)
                      |-|+.+.++.||.+|||+||+++|+.|.   ++  +.+++++|+|.|-+.+...+.+  .+   .+.+.   ...++.+.
T Consensus         7 ~~~~~~~~~ilvavSGG~DS~~LL~~L~~l~~~~~~~~l~~~HvnHgl~~~ad~~~~--fv---~~~c~---~~~ip~~~   78 (433)
T PRK10660          7 NRQLLESRQILVAFSGGLDSTVLLHQLVQWRTQNPGVTLRAIHIHHGLSPNADSWVK--HC---EQVCQ---QWQVPLVV   78 (433)
T ss_pred             HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHH--HH---HHHHH---HCCCCEEE
T ss_conf             664699998999972809999999999999986689828999971897926699999--99---99999---75997899


Q ss_pred             EECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             75011032244433222011000123310111111122333777777433993651145444434555443024777776
Q gi|254781031|r   77 LPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIET  156 (240)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  156 (240)
                      ..... ..     ...         .........|...+....    ..  ...+.++.+.+|..-+     .++..+-.
T Consensus        79 ~~~~v-~~-----~~~---------~~E~aAR~~RY~~f~~~~----~~--~~~l~tAHh~dDQaET-----vLlrL~RG  132 (433)
T PRK10660         79 ERVQL-AQ-----EGL---------GIEAAARQARYQAFARTL----LP--GEVLVTAQHLDDQCET-----FLLALKRG  132 (433)
T ss_pred             EEEEE-CC-----CCC---------CHHHHHHHHHHHHHHHHH----HH--CCEEEECCCCCHHHHH-----HHHHHHCC
T ss_conf             99872-79-----997---------699999999999999987----43--8879962456519999-----99998658


Q ss_pred             HHHHC-CCC-------CEEEEEEECCCCHHHHHHHHHHHCCCHHCC
Q ss_conf             77530-643-------216775313898899999999828200014
Q gi|254781031|r  157 AINLG-MES-------HVTVHTPLMWLKKYETWKLAQDIGGQDLVN  194 (240)
Q Consensus       157 ~~~~~-~~~-------~~~i~~P~~~~tK~eI~~~~~~~~~~~~~~  194 (240)
                      .-..| .+.       +..+++|++..+|.||...+.+.+.....+
T Consensus       133 sG~~GL~gm~~~r~~~~~~liRPLL~~~r~eI~~Y~~~~~l~~~eD  178 (433)
T PRK10660        133 SGPAGLSAMAEVSPFAGTQLLRPLLARTRGELEQWAQAHGLRWIED  178 (433)
T ss_pred             CCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEC
T ss_conf             9964456775224478970773744665999999999849980389


No 37 
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.89  E-value=2e-08  Score=71.35  Aligned_cols=161  Identities=22%  Similarity=0.161  Sum_probs=81.2

Q ss_pred             CEEEEEECCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECH--HHCCCC
Q ss_conf             4899980965699999999974-9839999976778877727999999999999988875203561587501--103224
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDR-FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLA--ILGDIS   86 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~-~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   86 (240)
                      |+++++|||+||+++|.++-+. |..+++||+|.|---..+.+......   .    +..  ......++.+  +++.+.
T Consensus         1 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVDnGlmRk~E~e~V~~~~---~----~~~--~~~~~~vdas~~Fl~~L~   71 (295)
T cd01997           1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGLLRKNEAERVEELF---S----KLL--GINLIVVDASERFLSALK   71 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHH---H----HHC--CCCEEEECHHHHHHHHHC
T ss_conf             9899905782899999999988650569999858978888299999999---8----706--997799566999999865


Q ss_pred             CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCC--CCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             44332220110001233101111111223337777774339-9365114544443--45554430247777767753064
Q gi|254781031|r   87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLG-ITNIVIGVCETDY--SGYPDCRHDTIRAIETAINLGME  163 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g-~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  163 (240)
                      .     ..+        ++.-.-.-.-.++.+....+..++ +..+.-|....|.  +.........+....+.......
T Consensus        72 g-----v~D--------PE~KRKiIG~~Fi~vf~~~~~~~~~~~~L~QGTlyPDvIES~~~~~~a~~IKsHHNvggLp~~  138 (295)
T cd01997          72 G-----VTD--------PEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGKGSADTIKSHHNVGGLPED  138 (295)
T ss_pred             C-----CCC--------HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCCCCCEEEEECCCCCCCHH
T ss_conf             8-----779--------256365653899999999997558861897243026257507888887514522456777232


Q ss_pred             CCEEEEEEECCCCHHHHHHHHHHHCCCHH
Q ss_conf             32167753138988999999998282000
Q gi|254781031|r  164 SHVTVHTPLMWLKKYETWKLAQDIGGQDL  192 (240)
Q Consensus       164 ~~~~i~~P~~~~tK~eI~~~~~~~~~~~~  192 (240)
                      ...+++-|+..+-|.||-+++.+||.+..
T Consensus       139 ~~~kliEPLr~LfKDEVR~lG~~LGlp~~  167 (295)
T cd01997         139 MKLKLIEPLRDLFKDEVRELGRELGLPEE  167 (295)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             26540016788745999999998689788


No 38 
>PRK00919 GMP synthase subunit B; Validated
Probab=98.88  E-value=6.8e-09  Score=74.21  Aligned_cols=157  Identities=22%  Similarity=0.169  Sum_probs=87.3

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHH--HCC
Q ss_conf             994899980965699999999974-98399999767788777279999999999999888752035615875011--032
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDR-FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAI--LGD   84 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~-~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   84 (240)
                      .+|+++.+|||+||+++|.++-+. |..+++|++|.|---..+.+..   .+.+    +.    ......++.+.  ++.
T Consensus        20 ~~kvi~~lSGGVDStV~A~Ll~kAig~~l~~v~VD~GllR~~E~~~V---~~~~----~~----~~~l~~vda~~~Fl~~   88 (306)
T PRK00919         20 DGKAIIALSGGVDSSVAAVLAHRAIGDRLLAVYVDTGLMRKGETERI---REIF----KD----GLNLRIVDASDRFLEA   88 (306)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHH---HHHH----HH----CCCCEEEEHHHHHHHH
T ss_conf             98599991688479999999998864265999986898879869999---9999----83----5892898349999997


Q ss_pred             CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             24443322201100012331011111112233377777743399365114544443455544302477777677530643
Q gi|254781031|r   85 ISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMES  164 (240)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (240)
                      +.     .-.+        ++.-.-.-...|+.+....+..+++..+.-|....|.--+    ...+....+.-.+....
T Consensus        89 L~-----gv~D--------PE~KRKiIG~~Fi~vfe~~~~~~~~~~LaQGTlyPDvIES----~~~IKSHHNVggLp~~m  151 (306)
T PRK00919         89 LK-----GVTD--------PEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIES----EGGIKSHHNVGGLPEGM  151 (306)
T ss_pred             HC-----CCCC--------HHHCCCHHHHHHHHHHHHHHHHHCCCEEEECEECCCHHHC----CCCCCCCCCCCCCHHHC
T ss_conf             37-----9989--------5674602579999999999998298768511073760204----67643416688773323


Q ss_pred             CEEEEEEECCCCHHHHHHHHHHHCCCHH
Q ss_conf             2167753138988999999998282000
Q gi|254781031|r  165 HVTVHTPLMWLKKYETWKLAQDIGGQDL  192 (240)
Q Consensus       165 ~~~i~~P~~~~tK~eI~~~~~~~~~~~~  192 (240)
                      ..+++-|+..+-|.||-+++.+||.+..
T Consensus       152 ~~kliEPLr~LfKDEVR~lG~~LGlp~~  179 (306)
T PRK00919        152 VLKIVEPLRDLYKDEVREVARALGLPEE  179 (306)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             5631031899855999999999697888


No 39 
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.86  E-value=6e-08  Score=68.32  Aligned_cols=164  Identities=21%  Similarity=0.140  Sum_probs=82.1

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECH--HHC
Q ss_conf             5994899980965699999999974-9839999976778877727999999999999988875203561587501--103
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDR-FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLA--ILG   83 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~-~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   83 (240)
                      ..+|++|.+|||+||+++|.++-+. |..+++|++|.|---..+.+.   +.+.+..   .   .......++.+  +++
T Consensus       215 g~~kVi~~lSGGVDStV~A~Ll~kAIGd~l~cvfVD~GllRknE~~~---V~~~~~~---~---lgl~~~~vdA~~~Fl~  285 (513)
T PRK00074        215 GDKKVILGLSGGVDSSVAAVLLHKAIGDQLTCVFVDHGLLRKNEAEQ---VMEMFRE---H---FGLNLIHVDASDRFLS  285 (513)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCCCHHH---HHHHHHH---H---CCCCEEEEEHHHHHHH
T ss_conf             87628997238830899999999985112489995377111672999---9999988---6---1996799224899999


Q ss_pred             CCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCCC--CCCCCCCHHHHHHHHHHHHH
Q ss_conf             2244433222011000123310111111122333777777433-99365114544443--45554430247777767753
Q gi|254781031|r   84 DISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRL-GITNIVIGVCETDY--SGYPDCRHDTIRAIETAINL  160 (240)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-g~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  160 (240)
                      .+..     -.+        ++.-.-.-.-.|+.+....+..+ ++..+.-|....|.  +.........+....+.-.+
T Consensus       286 ~L~g-----v~D--------PE~KRKIIG~~FI~vfe~~a~~~~~~~~L~QGTlYPDvIES~~~~~~a~~IKsHHNVggl  352 (513)
T PRK00074        286 ALAG-----VTD--------PEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDVIESASGTGKAATIKSHHNVGGL  352 (513)
T ss_pred             HHCC-----CCC--------HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             7379-----989--------799678877899999999997579983996467655068847989998860487758788


Q ss_pred             CCCCCEEEEEEECCCCHHHHHHHHHHHCCCHH
Q ss_conf             06432167753138988999999998282000
Q gi|254781031|r  161 GMESHVTVHTPLMWLKKYETWKLAQDIGGQDL  192 (240)
Q Consensus       161 ~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~~  192 (240)
                      ......++.-|+..+-|.||.+++.+||.+..
T Consensus       353 p~~~~~~lvEPlr~lfKDEVR~lg~~Lglp~~  384 (513)
T PRK00074        353 PEDMKLKLVEPLRELFKDEVRKLGLELGLPEE  384 (513)
T ss_pred             HHHCCCEEEEEHHHHCCHHHHHHHHHHCCCHH
T ss_conf             56648754503175615899999999689777


No 40 
>KOG2805 consensus
Probab=98.85  E-value=7.1e-09  Score=74.07  Aligned_cols=184  Identities=16%  Similarity=0.067  Sum_probs=84.6

Q ss_pred             HHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHC
Q ss_conf             21359948999809656999999999749839999976778877727999999999999988875203561587501103
Q gi|254781031|r    4 IIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILG   83 (240)
Q Consensus         4 ~~~~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (240)
                      ||++..++||.+|||+||++.|++|.++|+.+..|++.-++-.. +........+...+..+......++.+.+...  .
T Consensus         1 ~p~~~~~VvvamSgGVDSsVaa~Ll~~~g~~v~gv~M~nWd~~d-e~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~--k   77 (377)
T KOG2805           1 MPEKPDRVVVAMSGGVDSSVAARLLAARGYNVTGVFMKNWDSLD-EFGSQCPAERDWKDAKRVCKQLNIPLHQVNFV--K   77 (377)
T ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEH--H
T ss_conf             98666548999537711899999997418871699662201222-35668981120899999998709702787437--9


Q ss_pred             CCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC-C-----HHHHHHHHHH
Q ss_conf             224443322201100012331011111112233377777743399365114544443455544-3-----0247777767
Q gi|254781031|r   84 DISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDC-R-----HDTIRAIETA  157 (240)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~-~-----~~~~~~~~~~  157 (240)
                      +++......-.+....+..+.-.....+..-+-...---....|.+.++.|..+...-...++ .     +.-....+..
T Consensus        78 EYW~~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~~~~~~l~~~~d~~KDQt~  157 (377)
T KOG2805          78 EYWNDVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDEDNAESHLLISKDMVKDQTY  157 (377)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCCCCCEE
T ss_conf             99999999998887658999997134451421178999987558873774212144037556762357612566677326


Q ss_pred             HH--HCCCCCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             75--3064321677531389889999999982820
Q gi|254781031|r  158 IN--LGMESHVTVHTPLMWLKKYETWKLAQDIGGQ  190 (240)
Q Consensus       158 ~~--~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~  190 (240)
                      +.  .....--+...|+..++|.||-+++...|-+
T Consensus       158 FL~~in~~~L~r~lfPlg~~~K~eVk~lA~~~gf~  192 (377)
T KOG2805         158 FLSTINQTQLKRLLFPLGCLTKSEVKKLAKQAGFP  192 (377)
T ss_pred             EEECCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
T ss_conf             76303699998620667656779999999865986


No 41 
>PRK10696 C32 tRNA thiolase; Provisional
Probab=98.73  E-value=1.2e-07  Score=66.54  Aligned_cols=159  Identities=17%  Similarity=0.125  Sum_probs=91.1

Q ss_pred             CHHHCCCCCEEEEEECCHHHHHHHHHHHHC------CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             122135994899980965699999999974------98399999767788777279999999999999888752035615
Q gi|254781031|r    2 NDIIKKAPSALLLFSGGQDSSTCLSWALDR------FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDH   75 (240)
Q Consensus         2 ~~~~~~~~~av~l~SGGlDS~~~l~~l~~~------~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   75 (240)
                      ++|+....+.+|-+|||.||.++|+.|..-      ..++.++|+|.++.-. ..+.       +.+..   .....+.+
T Consensus        33 y~MIedGDRVlVglSGGKDS~~LL~iL~~Lq~~api~FeLvAv~lD~~~pGf-~~~~-------L~~yl---~~lGvp~~  101 (311)
T PRK10696         33 FNMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGF-PEHI-------LPEYL---EKLGVEYK  101 (311)
T ss_pred             HCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC-CHHH-------HHHHH---HHCCCCCE
T ss_conf             5877899999998267888999999999999858998559999837899998-8068-------89999---97499707


Q ss_pred             EEECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             87501103224443322201100012331011111112233377777743399365114544443455544302477777
Q gi|254781031|r   76 ILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIE  155 (240)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~  155 (240)
                      ++.....+ ...       ..........+...-.|-    .+....|...|++.|+.|.+.+|..-+-     ++..+.
T Consensus       102 i~~~d~~~-iv~-------~~~~egks~CslCsRlRR----g~Ly~~A~e~G~nKIALGHH~DDi~ETf-----LMNlf~  164 (311)
T PRK10696        102 IVEENTYG-IVK-------EKIPEGKTTCSLCSRLRR----GILYRTATELGATKIALGHHRDDILQTL-----FLNMFY  164 (311)
T ss_pred             EEEEEHHH-HHH-------HHCCCCCCHHHHHHHHHH----HHHHHHHHHCCCCEEEECCCHHHHHHHH-----HHHHHH
T ss_conf             99840767-998-------754368863789999999----9999999986998798606505589999-----999996


Q ss_pred             -----HH--HHHCCCCCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             -----67--7530643216775313898899999999828
Q gi|254781031|r  156 -----TA--INLGMESHVTVHTPLMWLKKYETWKLAQDIG  188 (240)
Q Consensus       156 -----~~--~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~  188 (240)
                           .|  ..........|++|+.+-...+|.+.+...+
T Consensus       165 gG~LktM~Pkl~~d~g~~~VIRPL~y~~E~di~~~a~~~~  204 (311)
T PRK10696        165 GGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIERFADAKA  204 (311)
T ss_pred             CCCCCCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf             6876367976674899759983042015999999999759


No 42 
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=98.69  E-value=2.7e-07  Score=64.24  Aligned_cols=163  Identities=21%  Similarity=0.134  Sum_probs=99.2

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC--HHHCC
Q ss_conf             994899980965699999999974-983999997677887772799999999999998887520356158750--11032
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDR-FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPL--AILGD   84 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~-~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   84 (240)
                      .+|+++.+|||+||++++.++-+. |..+++|++|.|---..+.+.   +.+.+.+.      +......++.  .+++.
T Consensus        21 ~~kvi~alSGGVDSsv~a~L~~~AiGd~l~cvfVD~GLlR~~E~e~---V~~~f~~~------~~~nl~~VdA~~~Fl~~   91 (315)
T COG0519          21 DGKVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDHGLLRKGEAEQ---VVEMFREH------LGLNLIVVDAKDRFLSA   91 (315)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHH---HHHHHHHH------CCCCEEEECHHHHHHHH
T ss_conf             8539998338780899999999974052489996377434785699---99998753------29845997549889988


Q ss_pred             CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             24443322201100012331011111112233377777743399365114544443455544302477777677530643
Q gi|254781031|r   85 ISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMES  164 (240)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (240)
                      +..-.             .+....-.-.-.++......+..+++..+.-|....|.--+-......+....+.-.+.-..
T Consensus        92 L~Gvt-------------DPE~KRKiIG~~Fi~VFe~ea~k~~~~~LaQGTiYpDvIES~~g~~~~IKSHHNVGGLP~~m  158 (315)
T COG0519          92 LKGVT-------------DPEEKRKIIGREFIEVFEEEAKKLGAEFLAQGTIYPDVIESGTGKAGTIKSHHNVGGLPEDM  158 (315)
T ss_pred             HCCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             43999-------------88998999879999999999985786068704434504650688888621356268895014


Q ss_pred             CEEEEEEECCCCHHHHHHHHHHHCCCHH
Q ss_conf             2167753138988999999998282000
Q gi|254781031|r  165 HVTVHTPLMWLKKYETWKLAQDIGGQDL  192 (240)
Q Consensus       165 ~~~i~~P~~~~tK~eI~~~~~~~~~~~~  192 (240)
                      .++++-|+..+-|.||.+++.+||.+..
T Consensus       159 ~lkLvEPLr~LfKDEVR~lg~~LGlp~~  186 (315)
T COG0519         159 KLKLVEPLRELFKDEVRELGRELGLPEE  186 (315)
T ss_pred             CEEEEHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             2223077898868999999998599888


No 43 
>KOG1706 consensus
Probab=98.67  E-value=2.1e-07  Score=64.92  Aligned_cols=42  Identities=29%  Similarity=0.472  Sum_probs=39.9

Q ss_pred             HHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf             213599489998096569999999997498399999767788
Q gi|254781031|r    4 IIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQR   45 (240)
Q Consensus         4 ~~~~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~   45 (240)
                      ||+..+++|+.+|||||.++.+.||+++|++|++..-|-||+
T Consensus         1 ~~~~~~~vVLAySGgLDTscil~WLkeqGyeViay~AnvGQ~   42 (412)
T KOG1706           1 MMSSKKSVVLAYSGGLDTSCILAWLKEQGYEVIAYLANVGQK   42 (412)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCH
T ss_conf             987774599995388672343588886296589840015626


No 44 
>pfam01507 PAPS_reduct Phosphoadenosine phosphosulfate reductase family. This domain is found in phosphoadenosine phosphosulfate (PAPS) reductase enzymes or PAPS sulfotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP). It is also found in NodP nodulation protein P from Rizobium which has ATP sulfurylase activity (sulfate adenylate transferase).
Probab=98.57  E-value=1e-06  Score=60.70  Aligned_cols=152  Identities=14%  Similarity=0.066  Sum_probs=73.0

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCC
Q ss_conf             48999809656999999999749839999976778877727999999999999988875203561587501103224443
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHSS   89 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (240)
                      +.|++||||.||+++|.++.+.+..+..+++|.|.-.+-..+....+.++       .   ....+..... ......  
T Consensus         1 ~v~vsfSGGKDS~vlL~L~~~~~~~~~vvf~Dtg~efpet~~~v~~~~~~-------~---~~~~~~~~~~-~~~~~~--   67 (174)
T pfam01507         1 ELVVSFSGGKDSLVLLHLASKAFPPGPVIFIDTGYEFPETYEFVDELEEK-------Y---GLNLKVYRPE-DSFAEG--   67 (174)
T ss_pred             CEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH-------H---CCEEEEEECC-HHHHHH--
T ss_conf             99999576099999999999848997579997899868999999999998-------4---9818998086-779877--


Q ss_pred             CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             32220110001233101111111223337777774339936511454444345554430247777767753064321677
Q gi|254781031|r   90 LTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVH  169 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (240)
                         ..................+....+   .......+......|..+++... +...+.+.      ........++ .
T Consensus        68 ---~~~~~~~~~~~~~~~~~~~K~~p~---~~~l~~~~~~~~i~GiR~~Es~~-R~~~~~~~------~~~~~~~~~~-~  133 (174)
T pfam01507        68 ---INPEGIPSKLWEDCPCRLRKVEPL---KRALKKLDFDAWFTGLRRDESPS-RAKLPIVS------IDGDFPKVIK-V  133 (174)
T ss_pred             ---HHHCCCCHHHCCCCCHHHHHHHHH---HHHHHHCCCCEEEEEEECCCHHH-HHHCCEEE------EECCCCCEEE-E
T ss_conf             ---631279501145452146651799---99998659968999510024456-64071674------3057888599-9


Q ss_pred             EEECCCCHHHHHHHHHHHC
Q ss_conf             5313898899999999828
Q gi|254781031|r  170 TPLMWLKKYETWKLAQDIG  188 (240)
Q Consensus       170 ~P~~~~tK~eI~~~~~~~~  188 (240)
                      +|.+++|..+|+....+.+
T Consensus       134 ~PI~~Wt~~DVw~yi~~~~  152 (174)
T pfam01507       134 FPLLNWTETDVWQYILANN  152 (174)
T ss_pred             ECHHHCCHHHHHHHHHHCC
T ss_conf             5005299999999999839


No 45 
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=98.56  E-value=1.8e-06  Score=59.14  Aligned_cols=160  Identities=18%  Similarity=0.224  Sum_probs=86.5

Q ss_pred             CCHHHCCCCCEEEEEECCHHHHHHHHHHHHCCC----EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             912213599489998096569999999997498----3999997677887772799999999999998887520356158
Q gi|254781031|r    1 MNDIIKKAPSALLLFSGGQDSSTCLSWALDRFD----RVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHI   76 (240)
Q Consensus         1 ~~~~~~~~~~av~l~SGGlDS~~~l~~l~~~~~----~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   76 (240)
                      |+|-....++-|+|||||.||+++|+++.+..+    -+.+||+|.|.+=.           .+.++..++........+
T Consensus        19 ~RE~~a~f~~pvmL~S~GKDS~VmLhLarKAF~p~~iPfPllHIDTg~kF~-----------Emi~fRD~~a~e~gl~Li   87 (300)
T PRK05253         19 IREVAAEFENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFP-----------EMIEFRDRRAKELGLELI   87 (300)
T ss_pred             HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHH-----------HHHHHHHHHHHHHCCCEE
T ss_conf             999999736967987167259999999999857889996348830799818-----------999999999998499789


Q ss_pred             EECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC---------------
Q ss_conf             75011032244433222011000123310111111122333777777433993651145444434---------------
Q gi|254781031|r   77 LPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYS---------------  141 (240)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~---------------  141 (240)
                      +.... .....       ...+...    -....++.+............+.++++.|...+...               
T Consensus        88 V~~n~-e~i~~-------g~~p~~~----g~~~~~~~lKT~~L~~al~~~~fda~~gGaRRDEe~sRAKERiFS~R~~~~  155 (300)
T PRK05253         88 VHSNP-EGIAR-------GINPFTH----GSAKHTNIMKTEGLKQALEKYGFDAAFGGARRDEEKSRAKERIFSFRDEFG  155 (300)
T ss_pred             EEECH-HHHHC-------CCCCCCC----CCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             97576-77756-------9995668----822231578789999999964876565101234432121254247756468


Q ss_pred             --CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf             --555443024777776775306432167753138988999999998
Q gi|254781031|r  142 --GYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQD  186 (240)
Q Consensus       142 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~  186 (240)
                        .+++.+|++.+.++.-+.  .+..++|. |+.++|--+||+....
T Consensus       156 ~Wdpk~QrPElW~lyn~~~~--~geh~RVf-PlsnWTElDIW~YI~~  199 (300)
T PRK05253        156 QWDPKNQRPELWNLYNGRIN--KGEHIRVF-PLSNWTELDIWQYIYR  199 (300)
T ss_pred             CCCCCCCCCHHHHHHCCCCC--CCCEEEEE-CCCCCHHHHHHHHHHH
T ss_conf             88856698026676355679--99647751-1202257789999998


No 46 
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=98.48  E-value=4.8e-06  Score=56.55  Aligned_cols=159  Identities=14%  Similarity=0.183  Sum_probs=85.9

Q ss_pred             CHHHCCCCCEEEEEECCHHHHHHHHHHHHCCC----EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             12213599489998096569999999997498----39999976778877727999999999999988875203561587
Q gi|254781031|r    2 NDIIKKAPSALLLFSGGQDSSTCLSWALDRFD----RVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHIL   77 (240)
Q Consensus         2 ~~~~~~~~~av~l~SGGlDS~~~l~~l~~~~~----~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (240)
                      +|-....++-|+|||||.||+++++++.+..+    -+.+||+|.|.+-           +.+.++...+........++
T Consensus        31 RE~~a~f~~pvmL~S~GKDS~VmlhLA~KAF~p~~iPfPllHIDTg~kF-----------~Emi~fRD~~a~~~~l~LiV   99 (312)
T PRK12563         31 REVVAECSKPVMLYSIGKDSSVMLHLAMKAFRPTRPPFPLLHVDTTWKF-----------REMIDFRDRRAKELGLDLVV   99 (312)
T ss_pred             HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCH-----------HHHHHHHHHHHHHHCCEEEE
T ss_conf             9999973696798616742999999999973778999735886368875-----------99999999999981986898


Q ss_pred             ECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC----------------
Q ss_conf             5011032244433222011000123310111111122333777777433993651145444434----------------
Q gi|254781031|r   78 PLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYS----------------  141 (240)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~----------------  141 (240)
                      ....- ....       ...+..    ......++.+.......-....+.++++-|...+...                
T Consensus       100 ~~n~~-~i~~-------g~~p~~----~~~~~~~~~lKT~~L~~ale~~~fDa~~gGaRRDEEksRAKERiFS~Rd~~~~  167 (312)
T PRK12563        100 HHNPD-GIAR-------GIVPFR----HGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEKSRAKERIFSFRSAFHR  167 (312)
T ss_pred             ECCHH-HHHC-------CCCCCC----CCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCCCCCC
T ss_conf             32878-8866-------999676----78377766898899999999739887850453213423443403066677889


Q ss_pred             -CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf             -555443024777776775306432167753138988999999998
Q gi|254781031|r  142 -GYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQD  186 (240)
Q Consensus       142 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~  186 (240)
                       .+++.+|++.+.++.-+.  .+..++| .|+.++|--+||+....
T Consensus       168 WDPknQrPElWnlyN~~~~--~Geh~RV-fPlsNWTElDIW~YI~~  210 (312)
T PRK12563        168 WDPKAQRPELWSLYNARLR--RGESLRV-FPLSNWTELDVWQYIAR  210 (312)
T ss_pred             CCCCCCCHHHHHHHCCCCC--CCCEEEE-CCCCCCCHHHHHHHHHH
T ss_conf             8855588358776155679--9971442-23556617899999998


No 47 
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold.   The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=98.45  E-value=2.4e-06  Score=58.43  Aligned_cols=155  Identities=15%  Similarity=0.089  Sum_probs=71.1

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCC---EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf             489998096569999999997498---39999976778877727999999999999988875203561587501103224
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFD---RVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS   86 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~---~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (240)
                      +.+++||||.||+++|+++.+...   .+..+|+|.|.-.+-..+....+.       ..+   ........ .......
T Consensus         1 ~~~vsfSGGKDS~vll~L~~~~~~~~~~~~vvf~DTg~e~pet~~~~~~~~-------~~~---~~~~~~~~-~~~~~~~   69 (173)
T cd01713           1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVA-------ERY---GLPLVVVR-PPDSPAE   69 (173)
T ss_pred             CEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH-------HHC---CCEEEEEE-CCCCHHH
T ss_conf             959996464999999999999665558837999688898989999999999-------873---99079996-8972899


Q ss_pred             CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             44332220110001233101111111223337777774339936511454444345554430247777767753064321
Q gi|254781031|r   87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHV  166 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (240)
                      ..... ......... .............+   .......+......|..+++........ ..       .......+.
T Consensus        70 ~~~~~-~~~~~~~~~-~~~~c~~~~K~~P~---~~~~~~~~~~~~~~GiR~~Es~~R~~~~-~~-------~~~~~~~~~  136 (173)
T cd01713          70 GLALG-LKGFPLPSP-DRRWCCRILKVEPL---RRALKELGVVAWITGIRRDESARRALLP-VV-------WTDDGKGGI  136 (173)
T ss_pred             HHHHH-CCCCCCCCC-CHHHHHHHHHHHHH---HHHHHHCCCCEEEEECCCCCCHHHCCCC-CC-------CCCCCCCCE
T ss_conf             99861-357799832-26889888807899---9999832982899941214624444376-23-------432688998


Q ss_pred             EEEEEECCCCHHHHHHHHHHHC
Q ss_conf             6775313898899999999828
Q gi|254781031|r  167 TVHTPLMWLKKYETWKLAQDIG  188 (240)
Q Consensus       167 ~i~~P~~~~tK~eI~~~~~~~~  188 (240)
                      -.++|+.++|..+|+....+.+
T Consensus       137 ~~~~Pi~~Wt~~dVw~yi~~~~  158 (173)
T cd01713         137 LKVNPLLDWTYEDVWAYLARHG  158 (173)
T ss_pred             EEEECHHHCCHHHHHHHHHHCC
T ss_conf             9993228599999999999839


No 48 
>pfam02540 NAD_synthase NAD synthase. NAD synthase (EC:6.3.5.1) is involved in the de novo synthesis of NAD and is induced by stress factors such as heat shock and glucose limitation.
Probab=98.28  E-value=9.1e-06  Score=54.79  Aligned_cols=150  Identities=15%  Similarity=0.111  Sum_probs=71.2

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHC-C-CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCC
Q ss_conf             5994899980965699999999974-9-8399999767788777279999999999999888752035615875011032
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDR-F-DRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGD   84 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~-~-~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (240)
                      ..+++|+-+|||+||++++.++.+. | ..|+++..-+.+......+.+...++          ........+++...-.
T Consensus        17 g~~gvViGlSGGIDSav~a~La~~AlG~~~v~~v~mP~~~ss~~s~~~A~~la~----------~lgi~~~~i~I~~~~~   86 (243)
T pfam02540        17 GAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALIMPSINSSEEDVQDALALAE----------NLGINYKTIDIKPIVR   86 (243)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHH----------HHCCCEEEEECHHHHH
T ss_conf             999199978887999999999999559742899964777898889999999999----------9689269998889999


Q ss_pred             CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC--CCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             2444332220110001233101111111223337777774339936511454444--34555443024777776775306
Q gi|254781031|r   85 ISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETD--YSGYPDCRHDTIRAIETAINLGM  162 (240)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  162 (240)
                      ...........     .   ...-.............++...+  .++.|...-.  ..++-       ..        .
T Consensus        87 ~~~~~~~~~~~-----~---~a~~Ni~aR~Rm~~ly~~A~~~~--~lVlgT~NksE~~~Gy~-------Tk--------y  141 (243)
T pfam02540        87 AFSQLFQPAKD-----D---LAKGNLKARIRMIILYAHANKFN--RLVLGTGNKSELALGYF-------TK--------Y  141 (243)
T ss_pred             HHHHHHCCCHH-----H---HHHHHHHHHHHHHHHHHHHCCCC--EEEEECCCCCCEEEEEE-------EE--------C
T ss_conf             99988532013-----7---78745578888999998623379--18981687042005432-------31--------2


Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHCCCH
Q ss_conf             43216775313898899999999828200
Q gi|254781031|r  163 ESHVTVHTPLMWLKKYETWKLAQDIGGQD  191 (240)
Q Consensus       163 ~~~~~i~~P~~~~tK~eI~~~~~~~~~~~  191 (240)
                      +...--++|...++|.||.++++.++.+.
T Consensus       142 GD~~~di~Pi~dL~KteV~~la~~l~vP~  170 (243)
T pfam02540       142 GDGACDIAPIGDLYKTQVYELAKRLNVPE  170 (243)
T ss_pred             CCCCCCHHHHCCCCHHHHHHHHHHHCCCH
T ss_conf             77765515416881899999999949888


No 49 
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=98.27  E-value=6.9e-06  Score=55.54  Aligned_cols=156  Identities=19%  Similarity=0.084  Sum_probs=72.0

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHC-C-CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCC
Q ss_conf             5994899980965699999999974-9-8399999767788777279999999999999888752035615875011032
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDR-F-DRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGD   84 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~-~-~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (240)
                      ..+++|+-+|||+||++++.++.+. | .+|++++.-.........+.+..+++.+          ......+++...-.
T Consensus        22 g~~~~viGlSGGIDSav~a~La~~Alg~~~v~~v~mP~~~ss~~s~~~A~~la~~l----------gi~~~~i~I~~~~~   91 (248)
T cd00553          22 GFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSSEETREDAKELAEAL----------GIEHVNIDIDPAVE   91 (248)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH----------CCCEEEECHHHHHH
T ss_conf             99919995888899999999999972887599988999789875899999999995----------89168715599999


Q ss_pred             CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             24443322201100012331011111112233377777743399365114544443455544302477777677530643
Q gi|254781031|r   85 ISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMES  164 (240)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (240)
                      ..........................    .....-.++...+...+.++--.+...++-           .    -.+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~NiqaRl----Rm~~Ly~~An~~~~lVlgTgNksE~~~Gy~-----------T----kyGD  152 (248)
T cd00553          92 AFLALLGESGGSELEDLALGNIQARL----RMVILYALANKLGGLVLGTGNKSELLLGYF-----------T----KYGD  152 (248)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHHHHHHHHCCCEEECCCCHHHHHHCCC-----------E----ECCC
T ss_conf             99998644048705567874248788----899999999744998962874607875721-----------0----0078


Q ss_pred             CEEEEEEECCCCHHHHHHHHHHHCCCH
Q ss_conf             216775313898899999999828200
Q gi|254781031|r  165 HVTVHTPLMWLKKYETWKLAQDIGGQD  191 (240)
Q Consensus       165 ~~~i~~P~~~~tK~eI~~~~~~~~~~~  191 (240)
                      ..-=++|...+.|.||.++++-++.+.
T Consensus       153 ~~~d~~Pi~~L~Kt~V~~la~~l~vp~  179 (248)
T cd00553         153 GAADINPIGDLYKTQVRELARYLGVPE  179 (248)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCHH
T ss_conf             775822136884999999999968889


No 50 
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.18  E-value=1.1e-05  Score=54.24  Aligned_cols=144  Identities=22%  Similarity=0.178  Sum_probs=72.3

Q ss_pred             EEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCCC
Q ss_conf             89998096569999999997498399999767788777279999999999999888752035615875011032244433
Q gi|254781031|r   11 ALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHSSL   90 (240)
Q Consensus        11 av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (240)
                      +-+|||||.||+..|++|.+-|++|.+||+|+|--.  .-+.|...++           .+...|.+...+-....+ +.
T Consensus         3 v~vLfSGGKDSSLaA~iL~klgyev~LVTvnFGv~d--~~k~A~~tA~-----------~lgF~h~vl~Ldr~ile~-A~   68 (198)
T COG2117           3 VYVLFSGGKDSSLAALILDKLGYEVELVTVNFGVLD--SWKYARETAA-----------ILGFPHEVLQLDREILED-AV   68 (198)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC--CHHHHHHHHH-----------HHCCCCCEECCCHHHHHH-HH
T ss_conf             689844897105899999871787179998733466--4066899999-----------829970000168899999-99


Q ss_pred             CCCHHHHHCCCCCCHHHHHHHHHHHHHHH--HHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             22201100012331011111112233377--7777433993651145444434555443024777776775306432167
Q gi|254781031|r   91 TKNVAMKIQDNNLPNTFVPGRNIIFLVFA--ATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTV  168 (240)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (240)
                      ..-.+..+          |.+..-.+...  ...|.. ..+.+..|..++|-      .|.....  ..-++....++.+
T Consensus        69 em~iedg~----------P~~aIq~iH~~alE~~A~r-~~~~iaDGTRRDDr------vP~ls~~--~~qSLEdR~nv~Y  129 (198)
T COG2117          69 EMIIEDGY----------PRNAIQYIHEMALEALASR-EVDRIADGTRRDDR------VPKLSRS--EAQSLEDRLNVQY  129 (198)
T ss_pred             HHHHHCCC----------CCHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCC------CCCCCHH--HHHHHHHHCCCEE
T ss_conf             99985389----------8508899999999999877-78887578744566------7642498--8751887518645


Q ss_pred             EEEECCCCHHHHHHHHHHH
Q ss_conf             7531389889999999982
Q gi|254781031|r  169 HTPLMWLKKYETWKLAQDI  187 (240)
Q Consensus       169 ~~P~~~~tK~eI~~~~~~~  187 (240)
                      ++|+.++-++.|-+++..+
T Consensus       130 i~PL~G~G~kti~~Lv~~~  148 (198)
T COG2117         130 IRPLLGLGYKTIRRLVSAI  148 (198)
T ss_pred             ECCCCCCCHHHHHHHHHHH
T ss_conf             5303344678999998877


No 51 
>KOG1622 consensus
Probab=98.16  E-value=6.7e-06  Score=55.63  Aligned_cols=38  Identities=32%  Similarity=0.414  Sum_probs=33.2

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHC-C-CEEEEEEEECCCC
Q ss_conf             994899980965699999999974-9-8399999767788
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDR-F-DRVETLSFDYGQR   45 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~-~-~~v~~i~~~ygq~   45 (240)
                      ..++|++.|||+||++++.++.+. + ..++++++|-|-.
T Consensus       230 ~~~Vl~~vSGgvdStV~a~Ll~~alg~~R~~ai~vdNG~m  269 (552)
T KOG1622         230 DYKVLVAVSGGVDSTVCAALLRRALGPDRVHAIHVDNGFM  269 (552)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf             4455998348850899999999863789448998126401


No 52 
>PRK06850 hypothetical protein; Provisional
Probab=98.12  E-value=4.9e-05  Score=50.27  Aligned_cols=216  Identities=14%  Similarity=0.075  Sum_probs=98.0

Q ss_pred             EEEEEECCHHHHHHHHHHH---------HCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHH
Q ss_conf             8999809656999999999---------7498399999767788777279999999999999888752035615875011
Q gi|254781031|r   11 ALLLFSGGQDSSTCLSWAL---------DRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAI   81 (240)
Q Consensus        11 av~l~SGGlDS~~~l~~l~---------~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (240)
                      =|+-||||-||++++.+..         ++...|+.|+-|.+--.+.-..+.....+.+...+...   ..+.......+
T Consensus        24 WvIGySGGKDSTavLqLvw~Al~~Lp~e~r~K~v~VIssDTlVEnPiV~~~v~~sL~~i~~~A~~~---~LPI~~~~v~P  100 (488)
T PRK06850         24 WVIGYSGGKDSTAVLQLVWNALAGLPPEKRHKPVYVISTDTLVENPVVVAWVNKSLERIKEAAKKQ---GLPITPHKLTP  100 (488)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCEEEEECC
T ss_conf             799758771999999999999983788766898899958987567799999999999999999865---99822688148


Q ss_pred             HCCCCCCCCCCCHHHHHCCCCCCHHHHHHHH--HHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHH--HH-HH
Q ss_conf             0322444332220110001233101111111--2233377777743399365114544443455544302477--77-76
Q gi|254781031|r   82 LGDISHSSLTKNVAMKIQDNNLPNTFVPGRN--IIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIR--AI-ET  156 (240)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~--~~-~~  156 (240)
                        ....+.-..-....++.....+-|...|.  .............+|...+..|.....+.. +..+.....  .. ..
T Consensus       101 --~~~dtFWvnlIGrGYPaP~~~FRWCTdRLKI~P~~rFI~~~v~~~ge~IlvLGtR~~ES~~-Ra~~m~k~e~~~~r~~  177 (488)
T PRK06850        101 --KVKDTFWVNLIGKGYPAPRRKFRWCTERLKINPSNDFIRDKVSAFGEVIVVLGTRKAESAA-RAQVMAKHKIGGTRDR  177 (488)
T ss_pred             --CCCCCHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHHHHCCCCCCC
T ss_conf             --8654433542047679998766547566514848999999987539789998545277799-9999998752473012


Q ss_pred             HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHHC-----CCCHHHC---CCCCCCCCCCCCCCCCCCC----CCHHH
Q ss_conf             7753064321677531389889999999982820001-----4325537---2162888655556688998----68778
Q gi|254781031|r  157 AINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQDLV-----NLILEES---HTCYLGKRDKRYEWGYGCN----SCPAC  224 (240)
Q Consensus       157 ~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~~~-----~~~~~~T---~SC~~~~~~~~~~~~~hCG----~C~~C  224 (240)
                      +..-....+..+++|...++-.+||........+-..     ..+|...   -.|  |-.  ....+..||    -||-|
T Consensus       178 Ls~h~~l~n~~vy~PI~~ws~ddVW~yL~~~~nPWg~~n~~L~~lY~~A~~~gEC--Plv--~d~stpSCG~SRFGCWvC  253 (488)
T PRK06850        178 LSRHSTLPNSFVYTPIEDWSNDDVWKYLLQWENPWGGSNKDLFTLYRGATADGEC--PLV--VDTSTPSCGNSRFGCWVC  253 (488)
T ss_pred             CCCCCCCCCCEEECCHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCC--CEE--ECCCCCCCCCCCCCCEEE
T ss_conf             5778888886897125537733799998618998899769999997057889967--736--579999877876661677


Q ss_pred             HHHH-----HHHHHHHH
Q ss_conf             9999-----99997306
Q gi|254781031|r  225 YLRQ-----KGWMEFKE  236 (240)
Q Consensus       225 ~~R~-----~af~~~~~  236 (240)
                      -.=.     .||++-|.
T Consensus       254 TvV~~DKSm~~mI~nge  270 (488)
T PRK06850        254 TVVTKDKSMEAMIQNDE  270 (488)
T ss_pred             EEECCCHHHHHHHHCCC
T ss_conf             77643372999987786


No 53 
>PRK13980 NAD synthetase; Provisional
Probab=98.10  E-value=3.9e-05  Score=50.86  Aligned_cols=151  Identities=20%  Similarity=0.155  Sum_probs=70.5

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHC-C-CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCC
Q ss_conf             5994899980965699999999974-9-8399999767788777279999999999999888752035615875011032
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDR-F-DRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGD   84 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~-~-~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (240)
                      ..+++|+-+|||+||++++.++.+. | .+|++|..=+...+....+.|..+++.          .......+++...-.
T Consensus        27 g~kg~VlGlSGGIDSavva~La~~Alg~~~v~~v~mP~~~ss~~s~~dA~~la~~----------lgi~~~~i~I~~~~~   96 (264)
T PRK13980         27 GFKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPYRVSPPEDLEDALLVAER----------LGIEYKVIEITPIVD   96 (264)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH----------HCCCEEEEECHHHHH
T ss_conf             9980999798688899999999985496606899898999988789999999998----------699849982799999


Q ss_pred             CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             24443322201100012331011111112233377777743399365114544443455544302477777677530643
Q gi|254781031|r   85 ISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMES  164 (240)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (240)
                      .........      +.....   ....-......-.++...+  .++.|..         +..++..-+...    .+.
T Consensus        97 ~~~~~~~~~------~~~~~~---NiqaR~Rm~~Ly~~An~~~--~lVlgTg---------NksE~~~Gy~Tk----yGD  152 (264)
T PRK13980         97 AFFSAVPDA------DRLRRG---NIMARTRMVLLYDYANRDN--RLVLGTS---------NKSELLLGYFTK----YGD  152 (264)
T ss_pred             HHHHHCCCC------CHHHHH---HHHHHHHHHHHHHHHHHCC--CEEECCC---------CHHHHHHHHCCC----CCC
T ss_conf             999863100------066888---7589899999999864339--7765588---------674798721001----687


Q ss_pred             CEEEEEEECCCCHHHHHHHHHHHCCCH
Q ss_conf             216775313898899999999828200
Q gi|254781031|r  165 HVTVHTPLMWLKKYETWKLAQDIGGQD  191 (240)
Q Consensus       165 ~~~i~~P~~~~tK~eI~~~~~~~~~~~  191 (240)
                      ..-=++|...+.|.||.++++.++.+.
T Consensus       153 ~~~d~~Pi~dL~Kt~V~~La~~l~vP~  179 (264)
T PRK13980        153 GAVDINPIGDLYKTQVRELARHLGVPE  179 (264)
T ss_pred             CCCCHHHHCCCCHHHHHHHHHHHCCCH
T ss_conf             665624525873999999999939966


No 54 
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily  including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which  binds to Adenosine group..
Probab=98.10  E-value=9.3e-06  Score=54.76  Aligned_cols=34  Identities=32%  Similarity=0.372  Sum_probs=31.3

Q ss_pred             EEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf             8999809656999999999749839999976778
Q gi|254781031|r   11 ALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQ   44 (240)
Q Consensus        11 av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq   44 (240)
                      +++++|||+||++.+++|.+.++++.++++|.|.
T Consensus         1 ~~v~~sgG~ds~~~~~~l~~~~~~~~~~~~~~~~   34 (103)
T cd01986           1 VLVAFSGGKDSSVAAALLKKLGYQVIAVTVDHGI   34 (103)
T ss_pred             CEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf             9897428822199999999869862899985376


No 55 
>TIGR02039 CysD sulfate adenylyltransferase, small subunit; InterPro: IPR011784   Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through reaction of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS). In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids. Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules.; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0019421 sulfate reduction APS pathway.
Probab=98.09  E-value=7.7e-05  Score=49.05  Aligned_cols=159  Identities=18%  Similarity=0.160  Sum_probs=84.5

Q ss_pred             CCHHHCCCCCEEEEEECCHHHHHHHHHHHHCCC----EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             912213599489998096569999999997498----3999997677887772799999999999998887520356158
Q gi|254781031|r    1 MNDIIKKAPSALLLFSGGQDSSTCLSWALDRFD----RVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHI   76 (240)
Q Consensus         1 ~~~~~~~~~~av~l~SGGlDS~~~l~~l~~~~~----~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   76 (240)
                      |+|.+....+=|+|||+|-||+++|+++.+..+    -..++|+|.|.+  -.         .+...............+
T Consensus        12 ~REvaa~F~~PV~LyS~GKDS~VlLHLA~KaF~Pg~~PFplLHvDTgw~--f~---------E~~~fRD~~~~~~~~~L~   80 (295)
T TIGR02039        12 IREVAAEFERPVLLYSIGKDSSVLLHLARKAFYPGRLPFPLLHVDTGWK--FR---------EMIAFRDELVAKYGLELI   80 (295)
T ss_pred             HHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCC--HH---------HHHHHHHHHHHHHCCEEE
T ss_conf             9987630379768986573479999987640588887973577406632--78---------999999999987097688


Q ss_pred             EECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCEEECCCCCCCCC--------------
Q ss_conf             750110322444332220110001233101111111223337777774-33993651145444434--------------
Q gi|254781031|r   77 LPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAY-RLGITNIVIGVCETDYS--------------  141 (240)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~g~~~i~~~~~~~~~~--------------  141 (240)
                      +....-+..             .+..+..........++-+.+.-.|. ..+.++.+-|...+.-.              
T Consensus        81 v~~~~~~~~-------------~g~~P~~~~~~~~~~~~~T~~L~~Al~~~~FDAa~gGARRdEE~sRaKERifS~R~~~  147 (295)
T TIGR02039        81 VHSNEEGIA-------------EGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEKSRAKERIFSFRDAF  147 (295)
T ss_pred             EEECHHHHH-------------HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCEEHHCCCC
T ss_conf             850502354-------------1566201012455555631899999873388656316631344301201000100345


Q ss_pred             ---CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf             ---555443024777776775306432167753138988999999998
Q gi|254781031|r  142 ---GYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQD  186 (240)
Q Consensus       142 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~  186 (240)
                         .++..+|+.....+..+.  .|..++++ |+-++|-.+||+....
T Consensus       148 h~WDPk~QRPELW~~YNg~~~--~GE~~RvF-PLSNwTE~DiW~Y~~~  192 (295)
T TIGR02039       148 HQWDPKKQRPELWNLYNGRIS--KGESVRVF-PLSNWTELDIWRYIAA  192 (295)
T ss_pred             CCCCCCCCCHHHHHHCCCCCC--CCCEEEEE-CCCCCCHHHHHHHHHH
T ss_conf             788851257377875052346--88726872-2666504458988743


No 56 
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=98.04  E-value=3.6e-05  Score=51.09  Aligned_cols=170  Identities=12%  Similarity=0.048  Sum_probs=79.4

Q ss_pred             EEEEEECCHHHHHHHHHHH---------HCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE-EECH
Q ss_conf             8999809656999999999---------74983999997677887772799999999999998887520356158-7501
Q gi|254781031|r   11 ALLLFSGGQDSSTCLSWAL---------DRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHI-LPLA   80 (240)
Q Consensus        11 av~l~SGGlDS~~~l~~l~---------~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~   80 (240)
                      =|+-||||-||++++.+..         ++...|+.|+-|.+--.+.-........+.+...+...   ..+... +-.+
T Consensus        16 WvIGySGGKDSTavLqLvw~Al~~Lp~e~r~K~v~VIssDTlVEnP~V~~~v~~~L~~i~~~a~~~---~LPi~~~~~~P   92 (447)
T TIGR03183        16 WVIGYSGGKDSTAVLQLVWNALSELPPEQRTKKIHVISTDTLVENPIVAAWVNVSLERMQEAAQKQ---GLPIEPHRLTP   92 (447)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCEEEEECC
T ss_conf             799758773999999999999984788757688899979987557799999999999999999974---99823689337


Q ss_pred             HHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHH--HHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHH---HH
Q ss_conf             10322444332220110001233101111111--22333777777433993651145444434555443024777---77
Q gi|254781031|r   81 ILGDISHSSLTKNVAMKIQDNNLPNTFVPGRN--IIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRA---IE  155 (240)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~---~~  155 (240)
                      .+.   .+.-..-....++.....+-|...+.  .............+|...+..|.....+.. +..+......   ..
T Consensus        93 ~~~---dtFWvnlIGrGYPaP~~~FRWCTdrLKI~P~~~fi~~~v~~~ge~ilvLGtR~~ES~~-Ra~~i~k~e~~~~~~  168 (447)
T TIGR03183        93 AIE---DTFWVNLIGKGYPAPRQKFRWCTDRLKISPSNTFIRDKVAANGEVILVLGTRKNESQA-RAAVMEKHEGGSTRD  168 (447)
T ss_pred             CCC---CCHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHHHCCCCHH
T ss_conf             854---4300010346307999876525576636828999998652149689999565277799-999999864467042


Q ss_pred             HHHHHCCCCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf             67753064321677531389889999999982
Q gi|254781031|r  156 TAINLGMESHVTVHTPLMWLKKYETWKLAQDI  187 (240)
Q Consensus       156 ~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~  187 (240)
                      .+..-....+..+++|...++-.|||......
T Consensus       169 ~ls~h~~l~n~~vy~PI~dws~ddVW~yL~~~  200 (447)
T TIGR03183       169 RLSRNSSLPNSWVYTPIEDWSNDDVWMYLLQN  200 (447)
T ss_pred             HCCCCCCCCCCEEECCHHHCCHHHHHHHHCCC
T ss_conf             12768888883797306747640899986338


No 57 
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.03  E-value=2.4e-05  Score=52.23  Aligned_cols=35  Identities=34%  Similarity=0.326  Sum_probs=28.1

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHC-C-CEEEEEEEEC
Q ss_conf             994899980965699999999974-9-8399999767
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDR-F-DRVETLSFDY   42 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~-~-~~v~~i~~~y   42 (240)
                      .|.+|+-+|||+||++++.++.+. | .+|+++..-.
T Consensus        33 ~kG~VlGlSGGIDSAv~a~Lav~AlG~e~V~gl~MP~   69 (325)
T PRK00876         33 RRGVVLGLSGGIDSSVTLALCVRALGKDRVLGLLMPE   69 (325)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             8679996876888999999999974855169997886


No 58 
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.02  E-value=7.9e-05  Score=48.97  Aligned_cols=156  Identities=14%  Similarity=0.029  Sum_probs=78.8

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf             59948999809656999999999749839999976778877727999999999999988875203561587501103224
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS   86 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (240)
                      ....+++++|||.||++++.++.+....+..+|+|.|...+-..+....+..+..           ....+.........
T Consensus        38 ~~~~~~~~~S~Gkds~V~l~L~~k~~~~~~vif~DTg~~f~Et~~~~d~~~~~~~-----------~~l~~~~~~~~~~~  106 (261)
T COG0175          38 FSNPVVVSFSGGKDSTVLLHLAAKAFPDFPVIFLDTGYHFPETYEFRDRLAEEYG-----------LDLKVYRPDDEVAE  106 (261)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCC-----------CEEEEECCCHHHHH
T ss_conf             4897599812746799999999860258718997077757889999999998729-----------71798167323443


Q ss_pred             CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             44332220110001233101111111223337777774339936511454444345554430247777767753064321
Q gi|254781031|r   87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHV  166 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (240)
                      .  .........+.  ........+....+..+..   ..+..+.+.|..+.+... +...+.+-..       ....+.
T Consensus       107 ~--~~~~~~~~~~~--~~r~c~~i~K~~pl~~al~---~~~~~a~~~G~Rrdes~~-Rak~~~~~~~-------~~~~~~  171 (261)
T COG0175         107 G--EKYGGKLWEPS--VERWCCDIRKVEPLKRALD---EYGFDAWFTGLRRDESPT-RAKLPVVSFD-------SEFGES  171 (261)
T ss_pred             H--HHCCCCCCCCC--CCHHHHHHHHHHHHHHHHH---HCCCCEEEEECCCCCCCC-CCCCCEECCC-------CCCCCC
T ss_conf             4--42136679997--4023325685513999996---358624998612045632-0248645346-------787683


Q ss_pred             EEEEEECCCCHHHHHHHHHHHC
Q ss_conf             6775313898899999999828
Q gi|254781031|r  167 TVHTPLMWLKKYETWKLAQDIG  188 (240)
Q Consensus       167 ~i~~P~~~~tK~eI~~~~~~~~  188 (240)
                      ..++|+.++|..+|+......+
T Consensus       172 ~rv~Pl~~Wt~~dVw~Yi~~~~  193 (261)
T COG0175         172 IRVNPLADWTELDVWLYILANN  193 (261)
T ss_pred             EEECCHHCCCHHHHHHHHHHHC
T ss_conf             6871532099999999999958


No 59 
>PRK13981 NAD synthetase; Provisional
Probab=98.01  E-value=5.3e-05  Score=50.06  Aligned_cols=150  Identities=17%  Similarity=0.140  Sum_probs=71.2

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHC-C-CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCC
Q ss_conf             994899980965699999999974-9-83999997677887772799999999999998887520356158750110322
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDR-F-DRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDI   85 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~-~-~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (240)
                      .+++|+-+|||+||+++|.++.+. | .+|++|++=.-..+....+.|...++.          ....++.+++...-..
T Consensus       281 f~~vviGLSGGiDSaL~aaiA~dALG~~nV~~v~MPs~~tS~~s~~dA~~La~~----------LGi~~~~i~I~~~~~~  350 (543)
T PRK13981        281 FPGVVLGLSGGIDSALVAAIAVDALGAENVRAVMMPSRYTSDESLDDAAALARN----------LGVRYDIIPIEPAFEA  350 (543)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCHHHEEEEECCCCCCCHHHHHHHHHHHHH----------HCCCEEEEEHHHHHHH
T ss_conf             974999767883599999999985383437886458777866569999999999----------5997487514999999


Q ss_pred             CCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             44433222011000123310111111122333777777433993651145444434555443024777776775306432
Q gi|254781031|r   86 SHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESH  165 (240)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (240)
                      ..............+....-.+.-.|..+++    .++...|...+.+|--.+-..++-               ...+.-
T Consensus       351 ~~~~l~~~f~~~~~dvt~ENiQAR~R~~iLm----~laN~~g~lvl~TgnkSE~avGy~---------------TlyGD~  411 (543)
T PRK13981        351 FEAALAPLFAGTEPDITEENLQSRIRGTLLM----ALSNKFGSLVLTTGNKSEMAVGYA---------------TLYGDM  411 (543)
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH----HHHHCCCCEEECCCCHHHHHHCHH---------------HHCCCC
T ss_conf             9997404416876665223454888999999----987338967964786727874746---------------533765


Q ss_pred             EEEEEEECCCCHHHHHHHHHH
Q ss_conf             167753138988999999998
Q gi|254781031|r  166 VTVHTPLMWLKKYETWKLAQD  186 (240)
Q Consensus       166 ~~i~~P~~~~tK~eI~~~~~~  186 (240)
                      ..-++|.....|.+|..+++=
T Consensus       412 ~g~~avi~dv~KT~V~~L~r~  432 (543)
T PRK13981        412 AGGFAPIKDVYKTLVYRLCRW  432 (543)
T ss_pred             CCCCCCCCCCCHHHHHHHHHH
T ss_conf             567430368659999999999


No 60 
>PRK08576 hypothetical protein; Provisional
Probab=98.00  E-value=1.7e-05  Score=53.10  Aligned_cols=51  Identities=31%  Similarity=0.426  Sum_probs=42.5

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             489998096569999999997498399999767788777279999999999
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKI   60 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~   60 (240)
                      .+||.||||-||++++.++++...++.+|++|.|.-++.+.+....+++++
T Consensus       237 ~iiVp~SGGKDStA~LlLA~ea~~dv~aVfvDTGlEfPeT~eyVe~va~kl  287 (439)
T PRK08576        237 TIIVPWSGGKDSTAALLLALKAFDEVTAVYVDTGYEMPLTDEYVEKVAEKL  287 (439)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             889956887799999999998618836999707986575899999999985


No 61 
>PRK08557 hypothetical protein; Provisional
Probab=97.96  E-value=1.8e-05  Score=52.90  Aligned_cols=50  Identities=22%  Similarity=0.224  Sum_probs=39.7

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf             48999809656999999999749839999976778877727999999999
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKK   59 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~   59 (240)
                      -+.|+||||-||+++|.++.+.+.++..++.|.|--.+-+.+....+++.
T Consensus       185 pV~VSfSGGKDS~a~L~La~~a~~~~~vvF~DTGlEfPeT~eyve~~~~~  234 (420)
T PRK08557        185 AINASFSGGKDSAVSTLLSKEVIPDLDVVFIDTGLEYPETLNYVKDFAKK  234 (420)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             46996068789999999999854881699962887772389999999998


No 62 
>PRK13794 hypothetical protein; Provisional
Probab=97.94  E-value=2.3e-05  Score=52.28  Aligned_cols=52  Identities=29%  Similarity=0.289  Sum_probs=39.2

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf             9948999809656999999999749-839999976778877727999999999
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDRF-DRVETLSFDYGQRNKVELECRLCVRKK   59 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~~-~~v~~i~~~ygq~~~~~~~~a~~~~~~   59 (240)
                      +..+.|+||||-||+++|.++++.. .++..+|.|.|--.+-+.+....++++
T Consensus       245 ~~pv~VSfSGGKDS~v~L~La~ka~~~~~~vvF~DTglEfPeT~e~ve~v~~~  297 (473)
T PRK13794        245 GKPPSVAYSGGKDSLATLLLALKAFGNEFPVLFADTGLEFPETLENVEDVEEL  297 (473)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             99839970686899999999998608971699960888767699999999998


No 63 
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an 
Probab=97.92  E-value=5.7e-05  Score=49.87  Aligned_cols=110  Identities=15%  Similarity=0.103  Sum_probs=61.4

Q ss_pred             CEEEEEECCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCC
Q ss_conf             4899980965699999999974-983999997677887772799999999999998887520356158750110322444
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDR-FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHS   88 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~-~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (240)
                      .|||.+|||.||+-.|+.|+++ |.++.+||++-|......           .++...+...+..+++...........-
T Consensus        61 DCiv~vSGGkDS~y~~~~l~~~~gl~pL~vt~d~~~~t~~g-----------~~Ni~~l~~~lgvD~i~~~~n~~~~k~l  129 (343)
T TIGR03573        61 DCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELG-----------VKNLNNLIKKLGFDLHTITINPETFRKL  129 (343)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH-----------HHHHHHHHHHCCCCEEEECCCHHHHHHH
T ss_conf             68986887728999999999982992599983598779899-----------9999999983699858746999999999


Q ss_pred             CCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf             33222011000123310111111122333777777433993651145444
Q gi|254781031|r   89 SLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCET  138 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~  138 (240)
                      .  ..   ....  .....++. .......+...|...++..|..|....
T Consensus       130 ~--k~---~~~~--~gd~~~~~-~~~i~~~~~~iA~k~~IplIi~Gen~~  171 (343)
T TIGR03573       130 Q--RA---YFKK--VGDPEWPQ-DHAIFASVYQVALKFNIPLIIWGENIA  171 (343)
T ss_pred             H--HH---HHHH--CCCHHHHH-HHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             9--99---9986--68946999-999999999999981999899756701


No 64 
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily   of proteins is predicted to  bind ATP. This domainhas  a strongly conserved motif SGGKD at the N terminus.
Probab=97.91  E-value=0.00045  Score=44.32  Aligned_cols=133  Identities=16%  Similarity=0.081  Sum_probs=68.9

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCC------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHC
Q ss_conf             489998096569999999997498399999767788------77727999999999999988875203561587501103
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQR------NKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILG   83 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (240)
                      |.++|+|||.||+..++++.++|++|..+-.-.-+.      |....+....+++          .-..++..+....  
T Consensus         1 Kv~~l~SGGKDS~lAl~~a~~~g~~v~~L~~~~~~~~~~~~~H~~~~~l~~~qAe----------algiPl~~~~~~~--   68 (194)
T cd01994           1 KVVALISGGKDSCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAE----------AMGIPLIRIEISG--   68 (194)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEECCCCCHHHHHHHHH----------HCCCCEEEEECCC--
T ss_conf             9899977859999999999986992599999963998805250557899999999----------8599669996689--


Q ss_pred             CCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             22444332220110001233101111111223337777774339936511454444345554430247777767753064
Q gi|254781031|r   84 DISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGME  163 (240)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (240)
                               ..+        . ..-....      ...-+...|++.+..|....+.      ...+...      ....
T Consensus        69 ---------~~~--------~-~~~~l~~------~L~~~k~~gi~~vv~GdI~s~~------qr~~~e~------~c~~  112 (194)
T cd01994          69 ---------EEE--------D-EVEDLKE------LLRKLKEEGVDAVVFGAILSEY------QRTRVER------VCER  112 (194)
T ss_pred             ---------CCC--------H-HHHHHHH------HHHHHHHCCCCEEEECCCCCHH------HHHHHHH------HHHH
T ss_conf             ---------871--------7-9999999------9999997599599999633288------9999999------9997


Q ss_pred             CCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             321677531389889999999982820
Q gi|254781031|r  164 SHVTVHTPLMWLKKYETWKLAQDIGGQ  190 (240)
Q Consensus       164 ~~~~i~~P~~~~tK~eI~~~~~~~~~~  190 (240)
                      .++..+.|++..+-.++++...+.|..
T Consensus       113 lgl~~~~PLW~~~~~~ll~e~i~~Gf~  139 (194)
T cd01994         113 LGLEPLAPLWGRDQEELLREMIEAGFK  139 (194)
T ss_pred             CCCEEECHHCCCCHHHHHHHHHHCCCE
T ss_conf             398887001079999999999987990


No 65 
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B  catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=97.85  E-value=5e-05  Score=50.22  Aligned_cols=56  Identities=27%  Similarity=0.341  Sum_probs=36.4

Q ss_pred             HCCCCCEEEEEECCHHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             1359948999809656999999999749-8399999767788777279999999999
Q gi|254781031|r    5 IKKAPSALLLFSGGQDSSTCLSWALDRF-DRVETLSFDYGQRNKVELECRLCVRKKI   60 (240)
Q Consensus         5 ~~~~~~av~l~SGGlDS~~~l~~l~~~~-~~v~~i~~~ygq~~~~~~~~a~~~~~~~   60 (240)
                      +.....+-+++|||+||++++..+.+.+ ..+.+.++.++.....+.+.+..+++.+
T Consensus        12 l~sd~~vg~~LSGGlDSs~ia~~~~~~~~~~~~~~s~~~~~~~~de~~~a~~va~~~   68 (269)
T cd01991          12 LRSDVPVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARRVAEHL   68 (269)
T ss_pred             HCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             544885686513569999999999983689984799862899973789999999980


No 66 
>pfam00733 Asn_synthase Asparagine synthase. This family is always found associated with pfam00310. Members of this family catalyse the conversion of aspartate to asparagine.
Probab=97.83  E-value=4.2e-05  Score=50.69  Aligned_cols=54  Identities=22%  Similarity=0.203  Sum_probs=36.5

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             5994899980965699999999974-98399999767788777279999999999
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDR-FDRVETLSFDYGQRNKVELECRLCVRKKI   60 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~-~~~v~~i~~~ygq~~~~~~~~a~~~~~~~   60 (240)
                      .....=++||||+||+++++++.+. +.++.+.++.+......+...+..+++.+
T Consensus        16 sdvpig~~LSGGlDSs~ia~l~~~~~~~~i~~~s~~~~~~~~~E~~~a~~~a~~~   70 (195)
T pfam00733        16 ADVPVGVLLSGGLDSSLIAALAARQSSPPLKTFSVGFEGSDYDEAPYAELVADHL   70 (195)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             6983675306746899999999985389953895578889975899999999651


No 67 
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=97.71  E-value=0.00025  Score=45.84  Aligned_cols=38  Identities=29%  Similarity=0.436  Sum_probs=29.8

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCC------CEEEEEEEECCC
Q ss_conf             59948999809656999999999749------839999976778
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRF------DRVETLSFDYGQ   44 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~------~~v~~i~~~ygq   44 (240)
                      ..+++|+=+|||+||++++.++.+.-      ..+.++..-|+.
T Consensus        24 ~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~   67 (268)
T COG0171          24 GFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGY   67 (268)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCC
T ss_conf             99986997666819999999999985656512432668678877


No 68 
>PRK13795 hypothetical protein; Provisional
Probab=97.68  E-value=0.00015  Score=47.34  Aligned_cols=50  Identities=22%  Similarity=0.248  Sum_probs=38.5

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf             99489998096569999999997498399999767788777279999999
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVR   57 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~   57 (240)
                      ...+.|+||||-||+++|.++.+.+.++..++.|.|---+-+.+....++
T Consensus       245 ~~pv~VsfSGGKDS~v~L~La~ka~~~~~~~f~dTglEfPeT~e~v~~~~  294 (630)
T PRK13795        245 NLPVVVSFSGGKDSLVVLDLAAEALRKFKAFFNNTGLEFPETVENVKEVA  294 (630)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             89759952686899999999998549828999507767646999999999


No 69 
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily   of proteins is predicted to  bind ATP. This domain has  a strongly conserved motif SGGKD at the N terminus.
Probab=97.68  E-value=8.7e-05  Score=48.72  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=60.8

Q ss_pred             CEEEEEECCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCCEEEEC-HHHCCCC
Q ss_conf             4899980965699999999974-983999997677887772799999999999998887520-356158750-1103224
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDR-FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDS-LGEDHILPL-AILGDIS   86 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~-~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~   86 (240)
                      .||+.+|||.||+-.|+.+++. |.++.+||++-+...+...           ++...+... +...+.... .......
T Consensus         3 DcIVpvSGGKDS~y~~~~lk~kyglnpL~Vt~~~~~~t~~g~-----------~Nl~nl~~~g~D~~~~~~~~~~~~~l~   71 (154)
T cd01996           3 DCIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFNSEEAV-----------KNIKNLIKKGLDLDHLVINPEEMKDLQ   71 (154)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH-----------HHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf             789968888189999999999949965999967987546899-----------999999974998169932888999999


Q ss_pred             CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC
Q ss_conf             4433222011000123310111111122333777777433993651145444434555
Q gi|254781031|r   87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYP  144 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~  144 (240)
                              ....... .....++.- ......+.-.|...++..|..|.........+
T Consensus        72 --------~~~~~~~-~gd~~~~~~-~~i~~~~~~~A~k~~IplIi~Gen~~~e~gg~  119 (154)
T cd01996          72 --------LARFKAK-VGDPCWPCD-TAIFTSLYKVALKFGIPLIITGENPAQEFGGI  119 (154)
T ss_pred             --------HHHHHHC-CCCCHHHHH-HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf             --------9999844-799348899-87998999999993999899727835514784


No 70 
>PRK00768 nadE NAD synthetase; Reviewed
Probab=97.66  E-value=0.00029  Score=45.52  Aligned_cols=24  Identities=25%  Similarity=0.329  Sum_probs=20.6

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCHH
Q ss_conf             753138988999999998282000
Q gi|254781031|r  169 HTPLMWLKKYETWKLAQDIGGQDL  192 (240)
Q Consensus       169 ~~P~~~~tK~eI~~~~~~~~~~~~  192 (240)
                      ++|...+.|.||.++++.+|.+..
T Consensus       181 i~PI~dL~KteV~~lA~~LgvP~~  204 (274)
T PRK00768        181 LLPLFGLNKRQGRALLAALGAPEH  204 (274)
T ss_pred             HHHHCCCCHHHHHHHHHHHCCCHH
T ss_conf             376325619999999999597999


No 71 
>pfam01902 ATP_bind_4 ATP-binding region. This family of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.In some members of this family, this domain is associated with pfam01042.
Probab=97.59  E-value=0.0044  Score=38.18  Aligned_cols=128  Identities=18%  Similarity=0.148  Sum_probs=65.7

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEEEEC--CCC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCC
Q ss_conf             489998096569999999997498399999767--788---777279999999999999888752035615875011032
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFDRVETLSFDY--GQR---NKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGD   84 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~y--gq~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (240)
                      |.++|||||.||+..+|.+++...-+.++++..  ..+   |....+....++        ..  -..+......+    
T Consensus         2 K~~~l~SGGKDS~~Al~~a~~~~~v~~L~t~~~~~~ds~~~H~~~~~l~~~qA--------~a--lgiPl~~~~~~----   67 (219)
T pfam01902         2 KVAALYSGGKDSNYALYWALKEIEVPYLVSMKSENKESYMFHEPNLHLTKLLA--------EA--LGIPIIKLYTK----   67 (219)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHH--------HH--CCCCEEEEECC----
T ss_conf             39999728699999999998719837999996379981026157889999999--------97--59968999679----


Q ss_pred             CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             24443322201100012331011111112233377777743399365114544443455544302477777677530643
Q gi|254781031|r   85 ISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMES  164 (240)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (240)
                             ....         ...         ..........+++.+..|....+.      +..+...      .....
T Consensus        68 -------~~~e---------~~~---------~~L~~~l~~~~i~~vv~GdI~s~~------qr~~~e~------~c~~l  110 (219)
T pfam01902        68 -------GEEE---------KEV---------EDLAGFLESLDVDALVAGAIYSEY------QKSRIES------VCREL  110 (219)
T ss_pred             -------CCHH---------HHH---------HHHHHHHHHCCCCEEEECCCCCHH------HHHHHHH------HHHHC
T ss_conf             -------8617---------999---------999999987598699998603688------9999999------99972


Q ss_pred             CEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             216775313898899999999828
Q gi|254781031|r  165 HVTVHTPLMWLKKYETWKLAQDIG  188 (240)
Q Consensus       165 ~~~i~~P~~~~tK~eI~~~~~~~~  188 (240)
                      +...+.|++..+-.++++...+.|
T Consensus       111 gl~~~~PLW~~d~~~ll~e~i~~G  134 (219)
T pfam01902       111 GLKPFAPLWGRDPRKLAEEIVREG  134 (219)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHCC
T ss_conf             988971034899999999999879


No 72 
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing); InterPro: IPR006426   These sequences represent glutamine-hydrolysing asparagine synthase. The group have a poorly conserved C-terminal extension while bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis .; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process.
Probab=97.55  E-value=0.00029  Score=45.47  Aligned_cols=126  Identities=20%  Similarity=0.201  Sum_probs=67.3

Q ss_pred             HHCCCCCEEEEEECCHHHHHHHHHHHHCC--------CEEEEEEEECC--CCCCCCHH--------HHHHHHHHHHHHHH
Q ss_conf             21359948999809656999999999749--------83999997677--88777279--------99999999999988
Q gi|254781031|r    4 IIKKAPSALLLFSGGQDSSTCLSWALDRF--------DRVETLSFDYG--QRNKVELE--------CRLCVRKKIVELMP   65 (240)
Q Consensus         4 ~~~~~~~av~l~SGGlDS~~~l~~l~~~~--------~~v~~i~~~yg--q~~~~~~~--------~a~~~~~~~~~~~~   65 (240)
                      ||+..+-. ++|||||||+.++.++.+.-        ..|+..++.+.  +..-.+.+        +|..+++.+...  
T Consensus       308 l~aDvpvG-~~LSGGlDSS~vaa~a~~~~~~~~~~W~~~~~tFsigf~~~~~~~~Es~l~P~~D~P~A~~vA~~~G~~--  384 (646)
T TIGR01536       308 LVADVPVG-VLLSGGLDSSLVAAIARREAPSEGVDWKGPVKTFSIGFEGDSKDFDESKLRPDDDQPYARKVADELGTE--  384 (646)
T ss_pred             CCCCCCEE-EEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEECCCCCCCCHHHHHHHHHHHCCC--
T ss_conf             20056068-887171679999999999767643311774347886517787653002578998618999999984983--


Q ss_pred             HHHHCCCCCEEEECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCC-CCCC
Q ss_conf             8752035615875011032244433222011000123310111111122333777777433-9936511454444-3455
Q gi|254781031|r   66 KWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRL-GITNIVIGVCETD-YSGY  143 (240)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-g~~~i~~~~~~~~-~~~~  143 (240)
                              ++.+.++.-..       .............+.....+..+.+....-.+... |...+..|-.++. +.+|
T Consensus       385 --------h~~~~~s~~e~-------~~~l~~v~~~~e~y~p~~~~~~~P~Yl~s~~ar~~Tg~kV~LSGeGaDElFgGY  449 (646)
T TIGR01536       385 --------HHEVLISEEEV-------LKALPEVIYHLETYDPTAIRASIPLYLLSKLAREDTGVKVVLSGEGADELFGGY  449 (646)
T ss_pred             --------CEEEEECHHHH-------HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCH
T ss_conf             --------24898458999-------999888765424885430311235899999999628838997486635553042


Q ss_pred             CCCC
Q ss_conf             5443
Q gi|254781031|r  144 PDCR  147 (240)
Q Consensus       144 ~~~~  147 (240)
                      .-.+
T Consensus       450 ~~f~  453 (646)
T TIGR01536       450 EYFR  453 (646)
T ss_pred             HHHC
T ss_conf             4421


No 73 
>PTZ00323 NAD+ synthase; Provisional
Probab=97.38  E-value=0.0011  Score=41.83  Aligned_cols=26  Identities=23%  Similarity=0.266  Sum_probs=21.3

Q ss_pred             EEEEEEECCCCHHHHHHHHHHHCCCH
Q ss_conf             16775313898899999999828200
Q gi|254781031|r  166 VTVHTPLMWLKKYETWKLAQDIGGQD  191 (240)
Q Consensus       166 ~~i~~P~~~~tK~eI~~~~~~~~~~~  191 (240)
                      .-=++|...++|.+|.++++.+|.+.
T Consensus       187 agd~apI~DL~Kt~V~~Lar~LgiPe  212 (294)
T PTZ00323        187 VVDVQLISDLHKSEVFLVAEELGVPE  212 (294)
T ss_pred             CCCCHHHCCCCHHHHHHHHHHCCCCH
T ss_conf             54703304683999999999809989


No 74 
>PTZ00077 asparagine synthetase; Provisional
Probab=97.33  E-value=0.0012  Score=41.62  Aligned_cols=26  Identities=31%  Similarity=0.466  Sum_probs=19.1

Q ss_pred             HHCCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf             213599489998096569999999997
Q gi|254781031|r    4 IIKKAPSALLLFSGGQDSSTCLSWALD   30 (240)
Q Consensus         4 ~~~~~~~av~l~SGGlDS~~~l~~l~~   30 (240)
                      ||+..+-. ++|||||||++++.++.+
T Consensus       234 L~sDVPvG-~lLSGGLDSSlIaAia~k  259 (610)
T PTZ00077        234 LMGDVPFG-ILLSGGLDSSIIAAILAK  259 (610)
T ss_pred             HHCCCCEE-EEECCCCHHHHHHHHHHH
T ss_conf             22567236-663477058999999998


No 75 
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=97.28  E-value=0.0008  Score=42.76  Aligned_cols=50  Identities=22%  Similarity=0.169  Sum_probs=31.8

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf             48999809656999999999749-839999976778877727999999999
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRF-DRVETLSFDYGQRNKVELECRLCVRKK   59 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~-~~v~~i~~~ygq~~~~~~~~a~~~~~~   59 (240)
                      ..=+++|||+||++++.++.+.. ..+.+.|+.+......+...+..+++.
T Consensus       260 pvG~~LSGGlDSS~I~a~~~~~~~~~i~tfsi~f~~~~~DE~~~A~~vA~~  310 (628)
T TIGR03108       260 PLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAFDDPAFDESAYARQVAER  310 (628)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             568764688636899999998429986436653488875436999999986


No 76 
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=97.19  E-value=0.0015  Score=41.01  Aligned_cols=147  Identities=19%  Similarity=0.072  Sum_probs=71.9

Q ss_pred             CCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCC
Q ss_conf             94899980965699999999974983999997677887772799999999999998887520356158750110322444
Q gi|254781031|r    9 PSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHS   88 (240)
Q Consensus         9 ~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (240)
                      .|++|.+|||.||++.+..|..-+.+|.+.+.-.    +..........          ...++........+++....+
T Consensus        61 ~kiaVA~SGG~DSsas~iilR~~g~~v~p~t~~L----p~~ir~n~~~l----------~~~lg~~p~yveedl~~i~kG  126 (255)
T COG1365          61 PKIAVAYSGGVDSSASAIILRWAGFTVDPGTAIL----PDHIRRNKEEL----------ETLLGEVPEYVEEDLEDIEKG  126 (255)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCEEECCCCCCC----CHHHHHHHHHH----------HHHHCCCHHHHHHHHHHHHHH
T ss_conf             4389984278642788999886210414632138----77886789999----------899725777899899999863


Q ss_pred             CCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC--CCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             33222011000123310111111122333777777433993651145444434--5554430247777767753064321
Q gi|254781031|r   89 SLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYS--GYPDCRHDTIRAIETAINLGMESHV  166 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  166 (240)
                      ....        +   +....-.+.+..+.....+-..+++.+..|..-..+.  .++                 -..-+
T Consensus       127 alnG--------R---fhpCGRCh~~I~~~V~~k~re~di~~vafGDlLs~G~~svy~-----------------eD~i~  178 (255)
T COG1365         127 ALNG--------R---FHPCGRCHSMIENAVMDKARELDIDVVAFGDLLSTGYGSVYR-----------------EDGIF  178 (255)
T ss_pred             HCCC--------C---CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEC-----------------CCCEE
T ss_conf             2058--------7---787523789999999999985387089974632346632120-----------------58879


Q ss_pred             EEEEEE-CCCCHHHHHHHHHHHCCCHHCCCCHHHCCCC
Q ss_conf             677531-3898899999999828200014325537216
Q gi|254781031|r  167 TVHTPL-MWLKKYETWKLAQDIGGQDLVNLILEESHTC  203 (240)
Q Consensus       167 ~i~~P~-~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC  203 (240)
                      ++..|. +.+||.|........+    .+  +...+-|
T Consensus       179 rlnlPAflAltK~Elr~il~~~~----~e--~~~kygC  210 (255)
T COG1365         179 RLNLPAFLALTKDELRSILKWNG----YE--LEMKYGC  210 (255)
T ss_pred             EECCHHHHHHCCHHHHHHHHHCC----CC--CHHCCCC
T ss_conf             97258888517199999987138----43--0011588


No 77 
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237   This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=97.16  E-value=0.0005  Score=44.03  Aligned_cols=31  Identities=32%  Similarity=0.299  Sum_probs=24.9

Q ss_pred             EEEEEECCHHHHHHHHHHHHCCCEE-EEEEEE
Q ss_conf             8999809656999999999749839-999976
Q gi|254781031|r   11 ALLLFSGGQDSSTCLSWALDRFDRV-ETLSFD   41 (240)
Q Consensus        11 av~l~SGGlDS~~~l~~l~~~~~~v-~~i~~~   41 (240)
                      +-+|+|||-||..+||+++++|.+| ++|.+-
T Consensus         3 vAvLySGGKDS~~ALy~al~eG~eV~~LV~v~   34 (227)
T TIGR00289         3 VAVLYSGGKDSILALYKALEEGFEVKYLVGVI   34 (227)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             68985187136899999986288547851000


No 78 
>PRK02628 nadE NAD synthetase; Reviewed
Probab=97.12  E-value=0.0037  Score=38.63  Aligned_cols=34  Identities=21%  Similarity=0.221  Sum_probs=22.8

Q ss_pred             CCCEEEEEECCHHHHHH---HHHH---HHCC-CEEEEEEEE
Q ss_conf             99489998096569999---9999---9749-839999976
Q gi|254781031|r    8 APSALLLFSGGQDSSTC---LSWA---LDRF-DRVETLSFD   41 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~---l~~l---~~~~-~~v~~i~~~   41 (240)
                      .+++|+-+|||+||+..   +..+   +..+ ..|++|++=
T Consensus       362 ~~~vViGLSGGiDSaLaLLVaa~A~d~Lg~~r~~V~~vtMP  402 (678)
T PRK02628        362 IKKVVIGISGGLDSTLALLVAAKAFDRLGLPRKNILAYTMP  402 (678)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHCEEEEECC
T ss_conf             98189967776447999999999999848971224899778


No 79 
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=97.09  E-value=0.00079  Score=42.78  Aligned_cols=128  Identities=21%  Similarity=0.161  Sum_probs=66.3

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCC------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHC
Q ss_conf             489998096569999999997498399999767788------77727999999999999988875203561587501103
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQR------NKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILG   83 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (240)
                      |.++|+|||.||+-.+|++++.|.+|..+-.-.-.+      |....+.+..+++.+.          .+......+.  
T Consensus         2 k~~aL~SGGKDS~~Al~~a~~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~g----------i~l~~~~~~g--   69 (223)
T COG2102           2 KVIALYSGGKDSFYALYLALEEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMG----------IPLVTFDTSG--   69 (223)
T ss_pred             CEEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHCC----------CCEEEEECCC--
T ss_conf             6899981671889999999975983689999815998704422225679999987448----------8359983476--


Q ss_pred             CCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             22444332220110001233101111111223337777774339936511454444345554430247777767753064
Q gi|254781031|r   84 DISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGME  163 (240)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (240)
                               ..+...                  .........++.+.+..|........      ..   +.+   ....
T Consensus        70 ---------~~e~ev------------------e~L~~~l~~l~~d~iv~GaI~s~yqk------~r---ve~---lc~~  110 (223)
T COG2102          70 ---------EEEREV------------------EELKEALRRLKVDGIVAGAIASEYQK------ER---VER---LCEE  110 (223)
T ss_pred             ---------CCHHHH------------------HHHHHHHHHCCCCEEEECHHHHHHHH------HH---HHH---HHHH
T ss_conf             ---------305569------------------99999997376337997343309999------99---999---9997


Q ss_pred             CCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             3216775313898899999999828
Q gi|254781031|r  164 SHVTVHTPLMWLKKYETWKLAQDIG  188 (240)
Q Consensus       164 ~~~~i~~P~~~~tK~eI~~~~~~~~  188 (240)
                      .+.+.+.|+...+-.++++...+.|
T Consensus       111 lGl~~~~PLWg~d~~ell~e~~~~G  135 (223)
T COG2102         111 LGLKVYAPLWGRDPEELLEEMVEAG  135 (223)
T ss_pred             HCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf             2978851251789899999999739


No 80 
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.03  E-value=0.0023  Score=39.92  Aligned_cols=54  Identities=19%  Similarity=0.230  Sum_probs=34.1

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHCCC-EEE-EEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             99489998096569999999997498-399-9997677887772799999999999
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDRFD-RVE-TLSFDYGQRNKVELECRLCVRKKIV   61 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~~~-~v~-~i~~~ygq~~~~~~~~a~~~~~~~~   61 (240)
                      ...+-++||||+||++++..+.+..- ... ..++.+......+.+++..+++.+.
T Consensus       230 dvpvg~~lSGGlDSS~Iaa~a~~~~~~~~~~~fsvg~~~~~~~D~~~a~~~A~~lg  285 (542)
T COG0367         230 DVPVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDSDSPDAKYARAVAKFLG  285 (542)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf             88789996776229999999998623455215898548999707999999999859


No 81 
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.02  E-value=0.0012  Score=41.71  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=24.3

Q ss_pred             EEEEEECCHHHHHHHHHHHHCC-CEEEEEEEECC
Q ss_conf             8999809656999999999749-83999997677
Q gi|254781031|r   11 ALLLFSGGQDSSTCLSWALDRF-DRVETLSFDYG   43 (240)
Q Consensus        11 av~l~SGGlDS~~~l~~l~~~~-~~v~~i~~~yg   43 (240)
                      .=+++|||+||++++..+.+.+ .++.+.++.|-
T Consensus       263 vg~~LSGGlDSS~i~a~~~~~~~~~i~tfs~~f~  296 (589)
T TIGR03104       263 VGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFE  296 (589)
T ss_pred             CCEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             3000178754389999999956999852788724


No 82 
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=96.71  E-value=0.0039  Score=38.46  Aligned_cols=26  Identities=35%  Similarity=0.436  Sum_probs=19.0

Q ss_pred             HCCCCCEEEEEECCHHHHHHHHHHHHC
Q ss_conf             135994899980965699999999974
Q gi|254781031|r    5 IKKAPSALLLFSGGQDSSTCLSWALDR   31 (240)
Q Consensus         5 ~~~~~~av~l~SGGlDS~~~l~~l~~~   31 (240)
                      ++..+-+ ++|||||||++++.++.+.
T Consensus       225 ~sDvpvG-~~LSGGLDSSlIaala~k~  250 (555)
T PRK09431        225 MSDVPYG-VLLSGGLDSSLISAIAKKY  250 (555)
T ss_pred             CCCCCEE-EEECCCHHHHHHHHHHHHH
T ss_conf             5688624-3205770679999999985


No 83 
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily  including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which  binds to Adenosine nucleotide.
Probab=96.65  E-value=0.0026  Score=39.58  Aligned_cols=31  Identities=35%  Similarity=0.269  Sum_probs=25.2

Q ss_pred             EEEEEECCHHHHHHHHHHHHC---CCEEEEEEEE
Q ss_conf             899980965699999999974---9839999976
Q gi|254781031|r   11 ALLLFSGGQDSSTCLSWALDR---FDRVETLSFD   41 (240)
Q Consensus        11 av~l~SGGlDS~~~l~~l~~~---~~~v~~i~~~   41 (240)
                      .++.+|||+||++++.++.+.   +.+++.++++
T Consensus         1 ilv~~Sgg~dS~~~~~la~~~~~~~~~~~~~~~~   34 (86)
T cd01984           1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVALVVV   34 (86)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHH
T ss_conf             9788617853899999999852599808976389


No 84 
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=96.52  E-value=0.0037  Score=38.62  Aligned_cols=40  Identities=28%  Similarity=0.428  Sum_probs=30.4

Q ss_pred             CCCCCEEEEEECCHHHHHHHHHHHH----CCC-EEEEEEEEC-CCC
Q ss_conf             3599489998096569999999997----498-399999767-788
Q gi|254781031|r    6 KKAPSALLLFSGGQDSSTCLSWALD----RFD-RVETLSFDY-GQR   45 (240)
Q Consensus         6 ~~~~~av~l~SGGlDS~~~l~~l~~----~~~-~v~~i~~~y-gq~   45 (240)
                      ..-+.+.|+||||.||.+.|.++++    .+. ++..+|+|+ ||.
T Consensus        25 ~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~QY   70 (407)
T COG3969          25 NTFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQY   70 (407)
T ss_pred             HCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf             4388389992378740589999999999819886579997004555


No 85 
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=96.47  E-value=0.036  Score=32.52  Aligned_cols=155  Identities=12%  Similarity=0.029  Sum_probs=76.5

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf             59948999809656999999999749839999976778877727999999999999988875203561587501103224
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS   86 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (240)
                      ..++.++.-|-|.+|.+++.++.+-+.++..+++|.|.-..-+.+.+..+.+.+.          ...+++ ........
T Consensus        40 ~~~~~~~tsSFG~es~Vllhli~~~~~~ipV~flDTG~~f~ETy~~~d~l~~~~~----------l~i~~~-~P~~~~~~  108 (243)
T PRK02090         40 FGGGLALASSFGAESAVLLHLVAQVDPDIPVIFLDTGYLFPETYRFIDQLTERLL----------LNLKVY-RPDASAAE  108 (243)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHC----------CCEEEE-CCCCHHHH
T ss_conf             5997699945867899999999941999967986579888899999999999979----------977997-78814999


Q ss_pred             CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             44332220110001233101111111223337777774339936511454444345554430247777767753064321
Q gi|254781031|r   87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHV  166 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (240)
                      ........  ..............|....+..+..     +.+.-..|. +.+.+.++...+.+-          ...+.
T Consensus       109 ~~~~~g~l--~~~~~~d~~~CC~irKvePL~raL~-----~~daWitG~-Rr~Qs~~Ra~l~~ve----------~d~g~  170 (243)
T PRK02090        109 QEARYGGL--WEQSVEDPDECCRIRKVEPLNRALA-----GLDAWITGL-RREQSGTRAELPVLE----------IDRGR  170 (243)
T ss_pred             HHHHHCCC--CCCCCCCHHHHHHHHCCHHHHHHHH-----HCCEEEECC-CHHHCHHHCCCCCEE----------ECCCE
T ss_conf             99982997--6676324898767765027999860-----177587447-144263342587345----------23998


Q ss_pred             EEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             677531389889999999982820
Q gi|254781031|r  167 TVHTPLMWLKKYETWKLAQDIGGQ  190 (240)
Q Consensus       167 ~i~~P~~~~tK~eI~~~~~~~~~~  190 (240)
                      --++|++++|+.||+....+...+
T Consensus       171 ~KvnPL~~Ws~~dv~~Yi~~~~LP  194 (243)
T PRK02090        171 FKINPLADWTNEDVWAYLKEHDLP  194 (243)
T ss_pred             EEECCCHHCCHHHHHHHHHHCCCC
T ss_conf             886700119999999999985999


No 86 
>KOG0573 consensus
Probab=96.20  E-value=0.014  Score=35.05  Aligned_cols=60  Identities=25%  Similarity=0.256  Sum_probs=34.1

Q ss_pred             CEEEEEECCHHHHHHHHHHHH---CC--CEEEEEEEECCCC------CCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             489998096569999999997---49--8399999767788------77727999999999999988875203
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALD---RF--DRVETLSFDYGQR------NKVELECRLCVRKKIVELMPKWKDSL   71 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~---~~--~~v~~i~~~ygq~------~~~~~~~a~~~~~~~~~~~~~~~~~~   71 (240)
                      +.-++||||+||+++|.++-.   .+  .+++-|.|  |..      .-...+.+..-.+.+....+....++
T Consensus       252 ~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF--~n~e~~~~~~~PDRktgr~g~~eL~s~~P~R~~nl  322 (520)
T KOG0573         252 NVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAF--GNPEGSKEQNVPDRKTGRRGLEELQSLYPKRSWNL  322 (520)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEC--CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             679996488408999999986069888636898602--58776665579607778888999987587633789


No 87 
>KOG0571 consensus
Probab=95.95  E-value=0.01  Score=35.93  Aligned_cols=53  Identities=25%  Similarity=0.303  Sum_probs=29.0

Q ss_pred             HCCCCCEEEEEECCHHHHHHHHHHHHC--------CCEEEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             135994899980965699999999974--------98399999767788777279999999999
Q gi|254781031|r    5 IKKAPSALLLFSGGQDSSTCLSWALDR--------FDRVETLSFDYGQRNKVELECRLCVRKKI   60 (240)
Q Consensus         5 ~~~~~~av~l~SGGlDS~~~l~~l~~~--------~~~v~~i~~~ygq~~~~~~~~a~~~~~~~   60 (240)
                      |...+-- +|+||||||+.+|..+.+.        |..++...+..  .......++..+++.+
T Consensus       223 M~d~p~G-vLLSGGLDSSLvAsia~R~lk~~~~~~~~~lhsFaIGl--e~SPDL~aarkVAd~i  283 (543)
T KOG0571         223 MTDVPFG-VLLSGGLDSSLVASIAARELKKAQAARGSKLHSFAIGL--EDSPDLLAARKVADFI  283 (543)
T ss_pred             HCCCCEE-EEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC--CCCHHHHHHHHHHHHH
T ss_conf             3168615-89507731899999999999876641278754788528--9985378889999874


No 88 
>KOG2594 consensus
Probab=95.12  E-value=0.13  Score=29.11  Aligned_cols=173  Identities=17%  Similarity=0.069  Sum_probs=78.1

Q ss_pred             HHHCCCCCEEEEEECCHHHHHHHHHH---HHC--------CC-EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH-
Q ss_conf             22135994899980965699999999---974--------98-399999767788777279999999999999888752-
Q gi|254781031|r    3 DIIKKAPSALLLFSGGQDSSTCLSWA---LDR--------FD-RVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKD-   69 (240)
Q Consensus         3 ~~~~~~~~av~l~SGGlDS~~~l~~l---~~~--------~~-~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~-   69 (240)
                      .|..+.+.++++||||.-|+++|-++   +++        +. .++++++..+...       ..+.+++.+...+... 
T Consensus        57 ~~~~~sk~vLlv~~G~ssSlvlLd~vh~~l~q~k~~~~~~~~tv~v~~~~~~~~~~-------~~v~e~lq~l~~~~~~~  129 (396)
T KOG2594          57 KMGTPSKNVLLVFDGGSSSLVLLDFVHLALKQLKNKRLRRDFTVLVLVVFQEFTDS-------TAVFEALQELIIDNIEW  129 (396)
T ss_pred             HCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCH-------HHHHHHHHHHHHHHCCC
T ss_conf             30885534699951884047699999999998666532768854899998852511-------88899999999840555


Q ss_pred             --CCCCCEEEECHHHC-CCCCCCCCCCHHHHHCCCCCC-HHH------HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf             --03561587501103-224443322201100012331-011------11111223337777774339936511454444
Q gi|254781031|r   70 --SLGEDHILPLAILG-DISHSSLTKNVAMKIQDNNLP-NTF------VPGRNIIFLVFAATLAYRLGITNIVIGVCETD  139 (240)
Q Consensus        70 --~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~  139 (240)
                        +.+...-.+..+.. .+...... +.+......... ...      -.....+.......+|..+|...+..|.+..+
T Consensus       130 ~~~~V~~la~~~~~~~~~~~~~~~~-n~El~ak~~kl~~~~sv~~~srqDLl~~lk~kll~~vA~~~g~~~i~~g~~~t~  208 (396)
T KOG2594         130 VRYVVSCLAPPEKDNHVVPVESING-NDELIAKDRKLKLSDSVPDDSRQDLLLHLKMKLLQKVAAENGYNRIVLGDSTTD  208 (396)
T ss_pred             CCEEEEECCCHHHHCCCCCCCCCCC-CCEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHH
T ss_conf             4268873373576457561100378-700113243304644566401789999999999999999859987983673527


Q ss_pred             CCCCC--------CCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf             34555--------443024777776775306432167753138988999999998
Q gi|254781031|r  140 YSGYP--------DCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQD  186 (240)
Q Consensus       140 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~  186 (240)
                      .+..-        ...-.++-   ...+.-...++++.+|+..+++.||-.....
T Consensus       209 la~~vlt~v~~GRG~sis~~v---~~~d~r~~~d~~llrPLrDl~~~Ei~~y~~l  260 (396)
T KOG2594         209 LASHVLTAVVKGRGGSISTDV---QVVDKRPKGDVKLLRPLRDLLSLEITSYCLL  260 (396)
T ss_pred             HHHHHHHHHHHCCCCCCEEHH---HHHCCCCCCCCEEEHHHHHHHHHHHHHHHHH
T ss_conf             999999999836676510054---4533465787200002778889999999976


No 89 
>TIGR00552 nadE NAD+ synthetase; InterPro: IPR003694 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology .; GO: 0003952 NAD+ synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0009435 NAD biosynthetic process.
Probab=95.02  E-value=0.11  Score=29.55  Aligned_cols=153  Identities=16%  Similarity=0.120  Sum_probs=72.2

Q ss_pred             CCCCEEEEEECCHHH--------HHHHHHHHHCCC--EEEEEEEECCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             599489998096569--------999999997498--399999767788-777279999999999999888752035615
Q gi|254781031|r    7 KAPSALLLFSGGQDS--------STCLSWALDRFD--RVETLSFDYGQR-NKVELECRLCVRKKIVELMPKWKDSLGEDH   75 (240)
Q Consensus         7 ~~~~av~l~SGGlDS--------~~~l~~l~~~~~--~v~~i~~~ygq~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   75 (240)
                      ..+.+|+-+|||+||        ++++++..+...  +++++-+-++.. .+...+.+...++.+.          ....
T Consensus        25 ~~~g~v~GlsGG~ds~l~g~l~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~a~~~~~~~~----------~~~~   94 (286)
T TIGR00552        25 GAKGVVLGLSGGVDSTLAGKLCQAVVAALCVEALGKEQNHALLLPHSNTTPEDDVQDALALAEPLG----------INYK   94 (286)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCCHHHHHHHHHHHHHCC----------CCCE
T ss_conf             765046730476203567789999999999850461142033214667884121799999887405----------4421


Q ss_pred             EEECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             87501103224443322201100012331011111112233377777743399365114544443455544302477777
Q gi|254781031|r   76 ILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIE  155 (240)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~  155 (240)
                      .+.....-........      ....... ..........+.....+.+....+.+..|.....     ...-.+...  
T Consensus        95 ~~~~~~~~~~~~~~~~------~~~~~~~-~~~~gn~~~r~r~~~~y~~a~~~~~lv~gt~n~~-----e~~~Gy~t~--  160 (286)
T TIGR00552        95 TIDIAPIAASFQAQTE------TGDPLAD-FLAEGNLKARLRMALLYAHANKHNLLVLGTGNKS-----ELLLGYFTK--  160 (286)
T ss_pred             ECCCHHHHHHHHHHHC------CCCCCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHH-----HHHHHHHHH--
T ss_conf             1130467788776420------3443331-0233222478899999887310163564046134-----454320010--


Q ss_pred             HHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             6775306432167753138988999999998282
Q gi|254781031|r  156 TAINLGMESHVTVHTPLMWLKKYETWKLAQDIGG  189 (240)
Q Consensus       156 ~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~  189 (240)
                            .+..-.=.+|..++.|.++.+++..++.
T Consensus       161 ------~Gdg~~d~~p~~~l~k~~~~~l~~~l~~  188 (286)
T TIGR00552       161 ------YGDGGCDILPLGGLFKTEVYELAKRLGV  188 (286)
T ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             ------1442000345532237889999998175


No 90 
>KOG2316 consensus
Probab=90.61  E-value=0.45  Score=25.71  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=27.7

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             48999809656999999999749839999976
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFDRVETLSFD   41 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~   41 (240)
                      +.|.|.|||.||.-...-..+.|++++++---
T Consensus         2 rvvaLiSGGKDScynmm~cv~~gHeiVaLanl   33 (277)
T KOG2316           2 RVVALISGGKDSCYNMMCCVRLGHEIVALANL   33 (277)
T ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             18999717807899999999848743564324


No 91 
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain; InterPro: IPR002761   This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase.   In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins. .
Probab=85.82  E-value=0.66  Score=24.67  Aligned_cols=33  Identities=33%  Similarity=0.390  Sum_probs=26.9

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             489998096569999999997498399999767
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFDRVETLSFDY   42 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~y   42 (240)
                      +.++++|||-||...+++.++++.++..+.--+
T Consensus         2 ~~~~~~~gg~d~~~~~~~~~~~~~~~~~l~~~~   34 (265)
T TIGR00290         2 KVAALYSGGKDSCLALYHALKEGHEVISLVNVF   34 (265)
T ss_pred             CEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHC
T ss_conf             247875077414789999874176100121101


No 92 
>KOG2840 consensus
Probab=79.81  E-value=2.1  Score=21.56  Aligned_cols=75  Identities=20%  Similarity=0.018  Sum_probs=44.1

Q ss_pred             CHHHCCCCCEEEEEECCHHHHHHHHHHHH--C----CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             12213599489998096569999999997--4----98399999767788777279999999999999888752035615
Q gi|254781031|r    2 NDIIKKAPSALLLFSGGQDSSTCLSWALD--R----FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDH   75 (240)
Q Consensus         2 ~~~~~~~~~av~l~SGGlDS~~~l~~l~~--~----~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   75 (240)
                      |+++....+.-+--|||-||+++++.+..  +    |.+..+++++-|-+= .. +....+.   ..+   ...+..++.
T Consensus        45 n~l~~rge~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~degi~g-yr-d~sl~av---krn---~~~~~lPL~  116 (347)
T KOG2840          45 NKLFARGERVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSIDEGIRG-YR-DDSLEAV---KRN---GVQYGLPLC  116 (347)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-EE-CCHHHHH---HHH---HHHCCCCEE
T ss_conf             686678883132555660277999999984030178841342101003642-00-4299999---986---142078638


Q ss_pred             EEECHHHCC
Q ss_conf             875011032
Q gi|254781031|r   76 ILPLAILGD   84 (240)
Q Consensus        76 ~~~~~~~~~   84 (240)
                      ++...++-.
T Consensus       117 ivs~~dl~~  125 (347)
T KOG2840         117 IVSYKDLYG  125 (347)
T ss_pred             EECHHHHHC
T ss_conf             841999725


No 93 
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=71.60  E-value=3.1  Score=20.53  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=22.1

Q ss_pred             CEEEEEECCHHHHHHHHHHHH-CCC---EEEEEEEEC
Q ss_conf             489998096569999999997-498---399999767
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALD-RFD---RVETLSFDY   42 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~-~~~---~v~~i~~~y   42 (240)
                      --+|++||||||+=.=++-+= ++.   .+--+|+|.
T Consensus       194 ~PtViv~GgLDsLQ~D~~rLF~dylaP~giAMLTlDM  230 (414)
T PRK05077        194 FPTVLMCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDM  230 (414)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             8759995672477888999999852646733797037


No 94 
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763    This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=71.30  E-value=2.1  Score=21.58  Aligned_cols=23  Identities=30%  Similarity=0.725  Sum_probs=12.8

Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             553721628886555566889986877899
Q gi|254781031|r  197 LEESHTCYLGKRDKRYEWGYGCNSCPACYL  226 (240)
Q Consensus       197 ~~~T~SC~~~~~~~~~~~~~hCG~C~~C~~  226 (240)
                      |++.-=|- |.      .+.|||.|.+|.+
T Consensus        56 fAKaLNC~-~~------~~~PCn~C~~C~~   78 (363)
T TIGR02397        56 FAKALNCQ-GP------DGEPCNECESCKE   78 (363)
T ss_pred             HHHHHCCC-CC------CCCCCCCCCHHHH
T ss_conf             99986588-78------7787777502277


No 95 
>KOG2303 consensus
Probab=69.47  E-value=2.6  Score=21.01  Aligned_cols=18  Identities=39%  Similarity=0.458  Sum_probs=13.8

Q ss_pred             EEEEEECCHHHHHHHHHH
Q ss_conf             899980965699999999
Q gi|254781031|r   11 ALLLFSGGQDSSTCLSWA   28 (240)
Q Consensus        11 av~l~SGGlDS~~~l~~l   28 (240)
                      -.+-+|||+||++.|.+.
T Consensus       352 fflPLSGG~DSsatA~iV  369 (706)
T KOG2303         352 FFLPLSGGVDSSATAAIV  369 (706)
T ss_pred             EEEECCCCCCCHHHHHHH
T ss_conf             477647886405899999


No 96 
>PRK12435 ferrochelatase; Provisional
Probab=69.13  E-value=2.4  Score=21.17  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=17.4

Q ss_pred             HCCCCCEEEEEE-CCHHHHHHHH
Q ss_conf             135994899980-9656999999
Q gi|254781031|r    5 IKKAPSALLLFS-GGQDSSTCLS   26 (240)
Q Consensus         5 ~~~~~~av~l~S-GGlDS~~~l~   26 (240)
                      |+++|.+|+|++ ||.||.--.-
T Consensus         1 M~k~K~gVLL~nlG~P~s~~dV~   23 (316)
T PRK12435          1 MKKKKIGLLVMAYGTPESLDDVE   23 (316)
T ss_pred             CCCCCEEEEEEECCCCCCHHHHH
T ss_conf             99885899998789999876899


No 97 
>pfam06500 DUF1100 Alpha/beta hydrolase of unknown function (DUF1100). This family consists of several hypothetical bacterial proteins of unknown function. Members of this family have an alpha/beta hydrolase fold.
Probab=67.97  E-value=4.1  Score=19.72  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=22.1

Q ss_pred             CCEEEEEECCHHHHHHHHHHHHC-C---CEEEEEEEEC
Q ss_conf             94899980965699999999974-9---8399999767
Q gi|254781031|r    9 PSALLLFSGGQDSSTCLSWALDR-F---DRVETLSFDY   42 (240)
Q Consensus         9 ~~av~l~SGGlDS~~~l~~l~~~-~---~~v~~i~~~y   42 (240)
                      +--+|++||||||+=.=++-+=+ +   ..+--+|+|.
T Consensus       189 P~PtViv~ggLDsLQ~D~~rLF~dyLaP~giAMLTlDM  226 (411)
T pfam06500       189 PFPVVLVSAGLDSLQTDMWRLFRDYLAPRDIAMLTIDM  226 (411)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             88869995772577888999999853745733797047


No 98 
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=66.12  E-value=9.1  Score=17.59  Aligned_cols=32  Identities=13%  Similarity=0.044  Sum_probs=20.6

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             59948999809656999999999749839999
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETL   38 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i   38 (240)
                      +.++.|+..-.|.-|..++..|.+.|++++-|
T Consensus        50 k~~~ivv~C~~G~rS~~aa~~L~~~G~~v~~l   81 (90)
T cd01524          50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNL   81 (90)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             58709998899805999999999869988996


No 99 
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=63.96  E-value=10  Score=17.34  Aligned_cols=31  Identities=19%  Similarity=0.137  Sum_probs=19.9

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             9948999809656999999999749839999
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDRFDRVETL   38 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i   38 (240)
                      ..+.|+....|.-|...+.+|.+.|++|+.+
T Consensus        56 ~~~ivl~C~~G~RS~~AA~~L~~~G~~v~~L   86 (95)
T cd01534          56 GARIVLADDDGVRADMTASWLAQMGWEVYVL   86 (95)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             9839998599987999999999869976995


No 100
>pfam10589 NADH_4Fe-4S NADH-ubiquinone oxidoreductase-F iron-sulfur binding region.
Probab=61.17  E-value=2  Score=21.61  Aligned_cols=14  Identities=29%  Similarity=0.700  Sum_probs=10.3

Q ss_pred             CCCCCHHHHHHHHH
Q ss_conf             99868778999999
Q gi|254781031|r  217 GCNSCPACYLRQKG  230 (240)
Q Consensus       217 hCG~C~~C~~R~~a  230 (240)
                      -||+|.||.+=-..
T Consensus        15 SCGqC~PCR~Gt~~   28 (46)
T pfam10589        15 SCGKCTPCREGTKW   28 (46)
T ss_pred             CCCCCCCCCCCHHH
T ss_conf             58999884051999


No 101
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=61.14  E-value=5.6  Score=18.92  Aligned_cols=16  Identities=25%  Similarity=0.364  Sum_probs=7.9

Q ss_pred             CEEEEEEC--CHHHHHHHH
Q ss_conf             48999809--656999999
Q gi|254781031|r   10 SALLLFSG--GQDSSTCLS   26 (240)
Q Consensus        10 ~av~l~SG--GlDS~~~l~   26 (240)
                      .| .||+|  |+=-..+|.
T Consensus        23 HA-~Lf~G~~G~GK~~lA~   40 (328)
T PRK05707         23 HA-YLLHGPAGIGKRALAE   40 (328)
T ss_pred             EE-EEEECCCCCCHHHHHH
T ss_conf             04-6447999867999999


No 102
>TIGR00276 TIGR00276 iron-sulfur cluster binding protein, putative; InterPro: IPR004453 This is a family of putative iron-sulphur cluster binding proteins. These proteins contain the 4Fe-4S ferredoxins iron-sulphur binding domain..
Probab=60.54  E-value=3.5  Score=20.13  Aligned_cols=11  Identities=27%  Similarity=0.818  Sum_probs=9.7

Q ss_pred             CCCCCCHHHHH
Q ss_conf             89986877899
Q gi|254781031|r  216 YGCNSCPACYL  226 (240)
Q Consensus       216 ~hCG~C~~C~~  226 (240)
                      .+||.|..|++
T Consensus       172 ~~CG~C~~C~~  182 (297)
T TIGR00276       172 ERCGKCTKCLD  182 (297)
T ss_pred             CCCCCCHHHHH
T ss_conf             57873224663


No 103
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627   L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=60.07  E-value=2.2  Score=21.39  Aligned_cols=20  Identities=15%  Similarity=0.224  Sum_probs=8.5

Q ss_pred             CHHHHHHHHHHHCCCHHCCC
Q ss_conf             88999999998282000143
Q gi|254781031|r  176 KKYETWKLAQDIGGQDLVNL  195 (240)
Q Consensus       176 tK~eI~~~~~~~~~~~~~~~  195 (240)
                      .|.++++...+++..+..++
T Consensus       214 ~kEd~~k~v~~lt~geG~Dv  233 (341)
T TIGR00692       214 AKEDLVKVVAELTSGEGVDV  233 (341)
T ss_pred             CCCCHHHHHHHHCCCCCEEE
T ss_conf             01476898884038896479


No 104
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=58.63  E-value=5.8  Score=18.80  Aligned_cols=12  Identities=33%  Similarity=0.614  Sum_probs=6.1

Q ss_pred             HHCCCCCEEEEE
Q ss_conf             213599489998
Q gi|254781031|r    4 IIKKAPSALLLF   15 (240)
Q Consensus         4 ~~~~~~~av~l~   15 (240)
                      .|+.+..|+++.
T Consensus         3 ~~~n~~halLl~   14 (262)
T PRK05818          3 LMKNKTHPLLLI   14 (262)
T ss_pred             CCCCCCCEEEEE
T ss_conf             334898505664


No 105
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=56.58  E-value=13  Score=16.54  Aligned_cols=29  Identities=10%  Similarity=0.029  Sum_probs=15.4

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHCCCEEE
Q ss_conf             99489998096569999999997498399
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDRFDRVE   36 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~~~~v~   36 (240)
                      .++.|+.+.+|--|..++..|.+.|+++.
T Consensus        61 d~~ivv~C~~G~rS~~aa~~L~~~G~~v~   89 (100)
T cd01523          61 DQEVTVICAKEGSSQFVAELLAERGYDVD   89 (100)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCEEE
T ss_conf             98399992896569999999998798379


No 106
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=56.08  E-value=14  Score=16.49  Aligned_cols=60  Identities=18%  Similarity=0.025  Sum_probs=42.3

Q ss_pred             CCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9489998096569999999997498399999767788777279999999999999888752
Q gi|254781031|r    9 PSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKD   69 (240)
Q Consensus         9 ~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~   69 (240)
                      ++.|+.-|-| +++.-+..+.+...+++.||+++|+..+.+.+....+.+.+.+....+..
T Consensus        29 k~~vVAS~tG-~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~   88 (186)
T COG1751          29 KHIVVASSTG-YTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLT   88 (186)
T ss_pred             CEEEEEECCC-HHHHHHHHHCCCCCEEEEEEEECCCCCCCCEECCHHHHHHHHHCCCEEEE
T ss_conf             1599984365-78999998442673599998322655688520589999999970860043


No 107
>PRK13596 NADH dehydrogenase I subunit F; Provisional
Probab=56.02  E-value=3.5  Score=20.18  Aligned_cols=16  Identities=19%  Similarity=0.449  Sum_probs=11.7

Q ss_pred             CCCCCCHHHHHHHHHH
Q ss_conf             8998687789999999
Q gi|254781031|r  216 YGCNSCPACYLRQKGW  231 (240)
Q Consensus       216 ~hCG~C~~C~~R~~af  231 (240)
                      .-||+|.||.+=-...
T Consensus       343 ESCGqCtPCReGt~~l  358 (426)
T PRK13596        343 ESCGQCTPCREGTGWM  358 (426)
T ss_pred             CCCCCCCCCHHHHHHH
T ss_conf             7899998645159999


No 108
>KOG0795 consensus
Probab=55.47  E-value=6.3  Score=18.59  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=46.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---EEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf             4345554430247777767753064321677---5313898899999999828200014325537216288865555668
Q gi|254781031|r  139 DYSGYPDCRHDTIRAIETAINLGMESHVTVH---TPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWG  215 (240)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~~~~~~~~  215 (240)
                      +...+|+.+++|.+....-+......+ .+.   +|-.+.+|+ ||++.-+        .+.++ .|  +|+++++-..+
T Consensus        78 ~Ry~sPdE~PFfpd~lpepilP~~~yp-~~Lhp~a~svNiNkk-Iw~~Yf~--------~lvP~-iv--kpGDDgNygSt  144 (262)
T KOG0795          78 RRYESPDEHPFFPDNLPEPILPPIQYP-QVLHPYAPSVNINKK-IWNMYFK--------ELVPL-IV--KPGDDGNYGST  144 (262)
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHH-HHHHHHH--------HHHHH-HC--CCCCCCCCCHH
T ss_conf             502697658886111875557877787-445667754555389-9999999--------88566-15--87888876237


Q ss_pred             CCCCC-CHHHHHHHHHH
Q ss_conf             89986-87789999999
Q gi|254781031|r  216 YGCNS-CPACYLRQKGW  231 (240)
Q Consensus       216 ~hCG~-C~~C~~R~~af  231 (240)
                      .-|.. |-+|+-||--|
T Consensus       145 a~cD~~CLQ~LSrRIHy  161 (262)
T KOG0795         145 AVCDIECLQSLSRRIHY  161 (262)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             88789999999888552


No 109
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=55.41  E-value=5.4  Score=19.02  Aligned_cols=31  Identities=32%  Similarity=0.296  Sum_probs=16.5

Q ss_pred             HHCCCCCEEEEEECCHHHH--HHHH---HHHHCCCEE
Q ss_conf             2135994899980965699--9999---999749839
Q gi|254781031|r    4 IIKKAPSALLLFSGGQDSS--TCLS---WALDRFDRV   35 (240)
Q Consensus         4 ~~~~~~~av~l~SGGlDS~--~~l~---~l~~~~~~v   35 (240)
                      |.|+--.- +|+|||+||-  +-++   .++++..+-
T Consensus        51 l~kkGy~g-~llSGGm~srg~VPl~kf~d~lK~lke~   86 (275)
T COG1856          51 LEKKGYEG-CLLSGGMDSRGKVPLWKFKDELKALKER   86 (275)
T ss_pred             HHHCCCEE-EEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             98457605-8975786879974289999999998775


No 110
>KOG0317 consensus
Probab=55.13  E-value=6.2  Score=18.64  Aligned_cols=32  Identities=25%  Similarity=0.479  Sum_probs=18.6

Q ss_pred             CCHHHCCCCCCCCCCCCCCCCCCCCC--CHHHHH
Q ss_conf             32553721628886555566889986--877899
Q gi|254781031|r  195 LILEESHTCYLGKRDKRYEWGYGCNS--CPACYL  226 (240)
Q Consensus       195 ~~~~~T~SC~~~~~~~~~~~~~hCG~--C~~C~~  226 (240)
                      ....-|+=|..=-+.+.....++||.  ||+|+.
T Consensus       234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~  267 (293)
T KOG0317         234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCIL  267 (293)
T ss_pred             CCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf             5778887347871678798768672117999999


No 111
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622   DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=55.11  E-value=7.6  Score=18.08  Aligned_cols=19  Identities=16%  Similarity=0.118  Sum_probs=10.5

Q ss_pred             EEECCCCHHHHHHHHHHHC
Q ss_conf             5313898899999999828
Q gi|254781031|r  170 TPLMWLKKYETWKLAQDIG  188 (240)
Q Consensus       170 ~P~~~~tK~eI~~~~~~~~  188 (240)
                      -+|.-.+..++.++-.+-|
T Consensus       175 ~~f~~l~~~~~~~~L~~~g  193 (216)
T TIGR00678       175 LPFPPLSEEALLQWLIEQG  193 (216)
T ss_pred             EEECCCCHHHHHHHHHHCC
T ss_conf             8625998899999999708


No 112
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=54.99  E-value=3.6  Score=20.13  Aligned_cols=22  Identities=36%  Similarity=0.816  Sum_probs=16.0

Q ss_pred             CCC--CCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             216--2888655556688998687789999
Q gi|254781031|r  201 HTC--YLGKRDKRYEWGYGCNSCPACYLRQ  228 (240)
Q Consensus       201 ~SC--~~~~~~~~~~~~~hCG~C~~C~~R~  228 (240)
                      .+|  ++|.+      ..||+.|-.|++|-
T Consensus       113 ~~C~~~KP~R------S~HC~~Cn~CV~k~  136 (309)
T COG5273         113 STCNIYKPPR------SHHCSICNRCVLKF  136 (309)
T ss_pred             CCCCCCCCCC------CCCCHHHCCCCCCC
T ss_conf             0243755896------75043306102045


No 113
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=52.22  E-value=3.1  Score=20.52  Aligned_cols=29  Identities=10%  Similarity=0.095  Sum_probs=13.3

Q ss_pred             EEEECCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             99809656999999999749839999976
Q gi|254781031|r   13 LLFSGGQDSSTCLSWALDRFDRVETLSFD   41 (240)
Q Consensus        13 ~l~SGGlDS~~~l~~l~~~~~~v~~i~~~   41 (240)
                      +.-=||+-=++..--....-..+++|-+|
T Consensus       191 V~GlGgVGlaaI~gA~~agA~~IiAvD~~  219 (366)
T COG1062         191 VFGLGGVGLAAIQGAKAAGAGRIIAVDIN  219 (366)
T ss_pred             EEECCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             99042766999998987488549999377


No 114
>TIGR02055 APS_reductase adenylylsulfate reductase, thioredoxin dependent; InterPro: IPR011798    This entry describes recently identified adenosine 5'-phosphosulphate (APS) reductase activity found in sulphate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulphate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL and SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.; GO: 0004604 phosphoadenylyl-sulfate reductase (thioredoxin) activity, 0019344 cysteine biosynthetic process.
Probab=50.66  E-value=17  Score=15.95  Aligned_cols=151  Identities=13%  Similarity=0.043  Sum_probs=76.9

Q ss_pred             ECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCCHH
Q ss_conf             09656999999999749839999976778877727999999999999988875203561587501103224443322201
Q gi|254781031|r   16 SGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHSSLTKNVA   95 (240)
Q Consensus        16 SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (240)
                      |=|+.=++++-++.+...++-.++.|.|-=|.=+.+..           .++.........+..................
T Consensus         1 Sl~~ED~VL~dl~~k~~~~~~v~~LDTGrlf~ET~~~i-----------dqv~E~Y~~~~~~~~~~~~~~~e~v~~~G~n   69 (200)
T TIGR02055         1 SLGAEDLVLVDLIAKVRKDVEVFFLDTGRLFKETYELI-----------DQVEERYDILIKVLVPPELTVEEQVEEYGLN   69 (200)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH-----------HHHHCCCCCEEEECCCCHHHHHHHHHHHCHH
T ss_conf             91012489999998607997278853888616779887-----------6532016710120168877888999884735


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC---CCEEEEEEE
Q ss_conf             10001233101111111223337777774339936511454444345554430247777767753064---321677531
Q gi|254781031|r   96 MKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGME---SHVTVHTPL  172 (240)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~P~  172 (240)
                      ......-........|....|..++.     |..+=.+|..+.++..++.+.+..-      +++..+   .++--+||+
T Consensus        70 lF~~~ve~~~~CC~~RKV~PL~raL~-----G~~AW~TGLRR~q~P~TRA~~~~~e------~De~~~~PekPl~K~nPL  138 (200)
T TIGR02055        70 LFYRSVELRKECCRIRKVEPLKRALS-----GVSAWITGLRREQSPPTRAQAPFLE------IDEAFGSPEKPLVKVNPL  138 (200)
T ss_pred             HHHHHCCCHHHCCCCCCCHHHHHCCC-----CCCCCEEECCCCCCCCCHHHHHHHH------CCCCCCCCCCCEEEECCC
T ss_conf             55540211010661454214574048-----8762030010067687554415542------022367898761443660


Q ss_pred             CCCCHHHHHHHHHHHC
Q ss_conf             3898899999999828
Q gi|254781031|r  173 MWLKKYETWKLAQDIG  188 (240)
Q Consensus       173 ~~~tK~eI~~~~~~~~  188 (240)
                      +.+|-.||++..++..
T Consensus       139 a~Wt~~~vw~Yi~~~~  154 (200)
T TIGR02055       139 ADWTLEDVWEYIADNE  154 (200)
T ss_pred             CCCCHHHHHHHHHHCC
T ss_conf             0046689999999707


No 115
>pfam04301 DUF452 Protein of unknown function (DUF452).
Probab=50.41  E-value=17  Score=15.92  Aligned_cols=36  Identities=19%  Similarity=0.425  Sum_probs=25.7

Q ss_pred             CCCCEEEEEEC-CHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf             59948999809-65699999999974983999997677
Q gi|254781031|r    7 KAPSALLLFSG-GQDSSTCLSWALDRFDRVETLSFDYG   43 (240)
Q Consensus         7 ~~~~av~l~SG-GlDS~~~l~~l~~~~~~v~~i~~~yg   43 (240)
                      ..++.++.|+| |+|..+...+.++.++++ .+.+||-
T Consensus         9 ~~~~LiLfF~GWg~~~~~f~hL~~p~~~D~-l~~yDYr   45 (213)
T pfam04301         9 QGDHLILYFAGWGTPPDAVEHLILPENHDL-CICYDYQ   45 (213)
T ss_pred             CCCEEEEEEECCCCCHHHHHHHCCCCCCEE-EEEECCC
T ss_conf             897599998167899789866336778649-9991466


No 116
>PTZ00304 NADH dehydrogenase (ubiquinone); Provisional
Probab=49.90  E-value=3.8  Score=19.96  Aligned_cols=12  Identities=25%  Similarity=0.847  Sum_probs=9.6

Q ss_pred             CCCCCHHHHHHH
Q ss_conf             998687789999
Q gi|254781031|r  217 GCNSCPACYLRQ  228 (240)
Q Consensus       217 hCG~C~~C~~R~  228 (240)
                      .||+|.||.+=-
T Consensus       366 SCGqCTPCReGT  377 (483)
T PTZ00304        366 SCGQCTPCREGS  377 (483)
T ss_pred             CCCCCCCCCCHH
T ss_conf             788997861728


No 117
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=49.83  E-value=17  Score=15.87  Aligned_cols=38  Identities=18%  Similarity=0.199  Sum_probs=26.9

Q ss_pred             CCHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             91221359948999809656999999999749839999976
Q gi|254781031|r    1 MNDIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFD   41 (240)
Q Consensus         1 ~~~~~~~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~   41 (240)
                      |.+||+++|-+|+= +|.+=|+++. .+...+.. ..+-+|
T Consensus         1 ~~~~~~~~KV~IIG-aG~VG~~~A~-~l~~~~l~-eivLiD   38 (322)
T PTZ00082          1 MAKMIPRKKISLIG-SGNIGGVMAY-LIQLKNLA-DVVLFD   38 (322)
T ss_pred             CCCCCCCCCEEEEC-CCHHHHHHHH-HHHCCCCC-EEEEEE
T ss_conf             91101798299989-6989999999-99638997-799997


No 118
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=49.78  E-value=17  Score=15.86  Aligned_cols=38  Identities=13%  Similarity=0.173  Sum_probs=21.4

Q ss_pred             CCEEEEEECCHHHHHHHHHH---HHCCCEEEEEEEECCCCCC
Q ss_conf             94899980965699999999---9749839999976778877
Q gi|254781031|r    9 PSALLLFSGGQDSSTCLSWA---LDRFDRVETLSFDYGQRNK   47 (240)
Q Consensus         9 ~~av~l~SGGlDS~~~l~~l---~~~~~~v~~i~~~ygq~~~   47 (240)
                      .+-++|++||.==+=.+-|+   ++++. -..|++-|+.|..
T Consensus       112 ~~~~vliAgGiGITPilSMl~~l~~~~~-~~~v~l~y~~r~~  152 (335)
T PRK10684        112 EDKYLLLAAGCGVTPIMSMRRWLAKNRP-QADVQVIFNVRTP  152 (335)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEEEECCC
T ss_conf             9868999654121569999999996199-9978999971771


No 119
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=47.66  E-value=19  Score=15.66  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=9.3

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCCC
Q ss_conf             489998096569999999997498
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRFD   33 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~~   33 (240)
                      +.|+-..+|.-|..++..|.+.|+
T Consensus        63 ~ivvyC~~G~RS~~Aa~~L~~~Gf   86 (101)
T cd01518          63 KVLMYCTGGIRCEKASAYLKERGF   86 (101)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC
T ss_conf             699985998279999999998498


No 120
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=46.47  E-value=14  Score=16.52  Aligned_cols=21  Identities=29%  Similarity=0.248  Sum_probs=16.1

Q ss_pred             CCEEEEEECCHHHHHHHHHHHH
Q ss_conf             9489998096569999999997
Q gi|254781031|r    9 PSALLLFSGGQDSSTCLSWALD   30 (240)
Q Consensus         9 ~~av~l~SGGlDS~~~l~~l~~   30 (240)
                      ..| -||+||.-+...|.++.+
T Consensus        24 ~HA-yLf~G~~Gk~~~A~~~A~   44 (290)
T PRK07276         24 NHA-YLFSGDFASFEMALFLAQ   44 (290)
T ss_pred             CEE-EECCCCCCHHHHHHHHHH
T ss_conf             505-421698687999999999


No 121
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=45.83  E-value=13  Score=16.61  Aligned_cols=10  Identities=40%  Similarity=1.042  Sum_probs=4.6

Q ss_pred             CCCCHHHHHH
Q ss_conf             9868778999
Q gi|254781031|r  218 CNSCPACYLR  227 (240)
Q Consensus       218 CG~C~~C~~R  227 (240)
                      |=+|.+|.+|
T Consensus        85 C~tCytC~eR   94 (195)
T COG1150          85 CVTCYTCTER   94 (195)
T ss_pred             EEECHHHHHH
T ss_conf             4101204301


No 122
>COG1894 NuoF NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]
Probab=45.76  E-value=4.4  Score=19.57  Aligned_cols=11  Identities=27%  Similarity=0.915  Sum_probs=8.9

Q ss_pred             CCCCCHHHHHH
Q ss_conf             99868778999
Q gi|254781031|r  217 GCNSCPACYLR  227 (240)
Q Consensus       217 hCG~C~~C~~R  227 (240)
                      .||+|.+|.+=
T Consensus       348 SCGkCtPCReG  358 (424)
T COG1894         348 SCGKCTPCREG  358 (424)
T ss_pred             CCCCCCCCCCC
T ss_conf             68888786687


No 123
>PRK11278 NADH dehydrogenase I subunit F; Provisional
Probab=45.43  E-value=5  Score=19.22  Aligned_cols=16  Identities=19%  Similarity=0.280  Sum_probs=11.2

Q ss_pred             CCCCCCHHHHHHHHHH
Q ss_conf             8998687789999999
Q gi|254781031|r  216 YGCNSCPACYLRQKGW  231 (240)
Q Consensus       216 ~hCG~C~~C~~R~~af  231 (240)
                      .-||+|.+|.+=-.-.
T Consensus       352 ESCGqCtPCReGt~~l  367 (448)
T PRK11278        352 ESCGWCTPCRDGLPWS  367 (448)
T ss_pred             CCCCCCCCCCCCHHHH
T ss_conf             8899998751719999


No 124
>pfam04396 consensus
Probab=45.09  E-value=20  Score=15.41  Aligned_cols=17  Identities=6%  Similarity=-0.158  Sum_probs=7.0

Q ss_pred             HHHHHHCCCCEEECCCC
Q ss_conf             77774339936511454
Q gi|254781031|r  120 ATLAYRLGITNIVIGVC  136 (240)
Q Consensus       120 ~~~a~~~g~~~i~~~~~  136 (240)
                      ..++..+.+........
T Consensus        86 ~~~a~~np~Pati~LIS  102 (149)
T pfam04396        86 LLWALDNPPPANLMLIS  102 (149)
T ss_pred             HHHHHHCCCCEEEEEEE
T ss_conf             99997099970799995


No 125
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family; InterPro: IPR011911   Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system .    Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond.   Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed  that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro.    This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon . Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system..
Probab=43.31  E-value=11  Score=17.11  Aligned_cols=19  Identities=16%  Similarity=0.419  Sum_probs=13.3

Q ss_pred             CHHHHHHHHHHHHHHHHHC
Q ss_conf             8778999999997306407
Q gi|254781031|r  221 CPACYLRQKGWMEFKEKYQ  239 (240)
Q Consensus       221 C~~C~~R~~af~~~~~~~~  239 (240)
                      |++|..=|+.|...|..|+
T Consensus        10 Cp~C~~aK~yL~~~gv~f~   28 (79)
T TIGR02196        10 CPPCKKAKEYLTSKGVAFE   28 (79)
T ss_pred             CCCHHHHHHHHHHCCCCEE
T ss_conf             8207899999995499457


No 126
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=42.51  E-value=22  Score=15.17  Aligned_cols=42  Identities=24%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             CCCCEEEEEECCHHH--HHHHHHHH----HCCCEEEEEEEECCCCCCC
Q ss_conf             599489998096569--99999999----7498399999767788777
Q gi|254781031|r    7 KAPSALLLFSGGQDS--STCLSWAL----DRFDRVETLSFDYGQRNKV   48 (240)
Q Consensus         7 ~~~~av~l~SGGlDS--~~~l~~l~----~~~~~v~~i~~~ygq~~~~   48 (240)
                      ..+..++|+=||.||  ++++.+|.    ++|+++--|--|-||..-.
T Consensus        70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~  117 (398)
T COG1341          70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIG  117 (398)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf             068738999898676788999999988764474189996899976667


No 127
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=42.02  E-value=23  Score=15.12  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=24.2

Q ss_pred             CCEEEEEECCHHHHHHHHHHHH----CCC--EEEEEEEEC
Q ss_conf             9489998096569999999997----498--399999767
Q gi|254781031|r    9 PSALLLFSGGQDSSTCLSWALD----RFD--RVETLSFDY   42 (240)
Q Consensus         9 ~~av~l~SGGlDS~~~l~~l~~----~~~--~v~~i~~~y   42 (240)
                      ||.++..|||+-|+.++--+.+    +|.  ++.++....
T Consensus         2 kKILLvCaaGMSTSmlv~km~~~A~~~G~dveI~Av~~~e   41 (104)
T PRK09590          2 AKALIICAAGMSSSLMAKKTTEFLKGKGKDIEVDAISATE   41 (104)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHH
T ss_conf             5599996899879999999999999769836999848889


No 128
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=41.56  E-value=15  Score=16.32  Aligned_cols=19  Identities=26%  Similarity=0.459  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             889986877899999999730
Q gi|254781031|r  215 GYGCNSCPACYLRQKGWMEFK  235 (240)
Q Consensus       215 ~~hCG~C~~C~~R~~af~~~~  235 (240)
                      ..-||.|  |+.||.|+.|.|
T Consensus       305 af~cGS~--aV~RR~AL~eIG  323 (713)
T TIGR03030       305 AFFCGSA--AVLRREALDEIG  323 (713)
T ss_pred             EEECCCH--HHHHHHHHHHCC
T ss_conf             7982617--987499999807


No 129
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains.  Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains.  The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins.  The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases.  The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences.  In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=40.96  E-value=22  Score=15.23  Aligned_cols=11  Identities=27%  Similarity=0.468  Sum_probs=3.7

Q ss_pred             EEEECCHHHHH
Q ss_conf             99809656999
Q gi|254781031|r   13 LLFSGGQDSST   23 (240)
Q Consensus        13 ~l~SGGlDS~~   23 (240)
                      .++|||=-|++
T Consensus       126 s~LSGGEKsLt  136 (212)
T cd03274         126 SNLSGGEKTLS  136 (212)
T ss_pred             HHCCCHHHHHH
T ss_conf             56275189999


No 130
>TIGR01389 recQ ATP-dependent DNA helicase RecQ; InterPro: IPR006293   The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase.    A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0004003 ATP-dependent DNA helicase activity, 0006310 DNA recombination, 0009432 SOS response.
Probab=40.76  E-value=7.6  Score=18.07  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=22.8

Q ss_pred             CHHHCCCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             25537216288---8655556688998687789999999
Q gi|254781031|r  196 ILEESHTCYLG---KRDKRYEWGYGCNSCPACYLRQKGW  231 (240)
Q Consensus       196 ~~~~T~SC~~~---~~~~~~~~~~hCG~C~~C~~R~~af  231 (240)
                      -|..|.+|..-   +.-+......|||.|..|+.=...+
T Consensus       364 ~y~~~~~Cr~~~~l~YFGE~~~~e~Cg~CdnCl~p~~~~  402 (607)
T TIGR01389       364 AYCETQTCRRALILRYFGENEEVEPCGNCDNCLDPPKSY  402 (607)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             988789999999886418888898888665557984100


No 131
>TIGR01472 gmd GDP-mannose 4,6-dehydratase; InterPro: IPR006368   This family represent GDP-mannose 4,6-dehydratase, also known as GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of Escherichia coli. Excluded from this family are members of the clade that are poorly related because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase .; GO: 0008446 GDP-mannose 46-dehydratase activity, 0019673 GDP-mannose metabolic process, 0005622 intracellular.
Probab=40.30  E-value=24  Score=14.95  Aligned_cols=27  Identities=33%  Similarity=0.411  Sum_probs=21.5

Q ss_pred             EEEEC--CHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             99809--6569999999997498399999
Q gi|254781031|r   13 LLFSG--GQDSSTCLSWALDRFDRVETLS   39 (240)
Q Consensus        13 ~l~SG--GlDS~~~l~~l~~~~~~v~~i~   39 (240)
                      .|.||  |=|=+=+|=+|+++||+||.|-
T Consensus         3 ALiTGiTGQDGSYLAE~LL~~GYeVHG~~   31 (365)
T TIGR01472         3 ALITGITGQDGSYLAEFLLEKGYEVHGLI   31 (365)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf             68834555767899999872696876458


No 132
>TIGR01198 pgl 6-phosphogluconolactonase; InterPro: IPR005900    6-phosphogluconolactonase (3.1.1.31 from EC) is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway.  6-phospho-D-glucono-1,5-lactone + H2O = 6-phospho-D-gluconate. ; GO: 0017057 6-phosphogluconolactonase activity, 0006098 pentose-phosphate shunt.
Probab=40.26  E-value=11  Score=17.00  Aligned_cols=41  Identities=20%  Similarity=0.240  Sum_probs=25.1

Q ss_pred             CCHHHCCCCCEEEEEECCHHHHHHHHHHHHC----C---CEEEEEEEE
Q ss_conf             9122135994899980965699999999974----9---839999976
Q gi|254781031|r    1 MNDIIKKAPSALLLFSGGQDSSTCLSWALDR----F---DRVETLSFD   41 (240)
Q Consensus         1 ~~~~~~~~~~av~l~SGGlDS~~~l~~l~~~----~---~~v~~i~~~   41 (240)
                      |.+.++.+.++.|.||||===..++--|-.+    .   .+++....|
T Consensus        20 ~~~Al~~~~~~~~alSGGr~p~~L~~~La~~~~~~~~~W~~~~~~l~D   67 (251)
T TIGR01198        20 LQKALAERGQFLLALSGGRSPIALLEALAAQEAGSKLDWSRIHLFLGD   67 (251)
T ss_pred             HHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf             999999768968998248745789999778634365880215788632


No 133
>pfam08366 LLGL LLGL2. This domain is found in lethal giant larvae homolog 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn. It has been identified in eukaryotes and tends to be found together with WD repeats (pfam00400).
Probab=40.24  E-value=16  Score=16.15  Aligned_cols=30  Identities=17%  Similarity=0.450  Sum_probs=18.5

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf             59948999809656999999999749839999976778
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQ   44 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq   44 (240)
                      +...-+++|||||=.        ..+-+-++||+--|.
T Consensus        25 ~~g~~~iiFSGGmpr--------~~ygdr~~vTV~~gk   54 (105)
T pfam08366        25 RSGEPFIIFSGGMPR--------ASYGDRHCITVMHGK   54 (105)
T ss_pred             CCCCCEEEEECCCCC--------CCCCCCCEEEEEECC
T ss_conf             789967998489876--------535897239999798


No 134
>COG1158 Rho Transcription termination factor [Transcription]
Probab=40.22  E-value=11  Score=17.07  Aligned_cols=15  Identities=27%  Similarity=0.125  Sum_probs=8.0

Q ss_pred             EEEEECCCCHHHHHH
Q ss_conf             775313898899999
Q gi|254781031|r  168 VHTPLMWLKKYETWK  182 (240)
Q Consensus       168 i~~P~~~~tK~eI~~  182 (240)
                      -+.|.++..|...-+
T Consensus       355 RifPAIdi~kSGTRk  369 (422)
T COG1158         355 RIFPAIDINKSGTRK  369 (422)
T ss_pred             CCCCCEECCCCCCCH
T ss_conf             245302035677615


No 135
>pfam08981 consensus
Probab=40.20  E-value=24  Score=14.94  Aligned_cols=58  Identities=22%  Similarity=0.111  Sum_probs=37.6

Q ss_pred             CCEEEEEECCHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9489998096569999999997-4983999997677887772799999999999998887
Q gi|254781031|r    9 PSALLLFSGGQDSSTCLSWALD-RFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKW   67 (240)
Q Consensus         9 ~~av~l~SGGlDS~~~l~~l~~-~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~   67 (240)
                      ++.|+.-|-| ++...++.+++ .+.+++.|++.+|.+.+..-+......+++.+...++
T Consensus        27 ~~iVvASssG-~TA~k~~e~~~~~~~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G~~V   85 (181)
T pfam08981        27 KHIVVASSSG-ETALKAAEALEGTNLNVVVVTHHAGFSEPGEQEMDPEVRKELEERGVKV   85 (181)
T ss_pred             CEEEEEECCC-HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEE
T ss_conf             7699980787-7999999871358955999946457789985638999999999779889


No 136
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=40.20  E-value=24  Score=14.94  Aligned_cols=35  Identities=26%  Similarity=0.251  Sum_probs=24.3

Q ss_pred             CEEEEEECCHHHHHHHHHHHH----CCCEEEEEEEECCC
Q ss_conf             489998096569999999997----49839999976778
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALD----RFDRVETLSFDYGQ   44 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~----~~~~v~~i~~~ygq   44 (240)
                      |.+++.|||+-|+.++.-+.+    +|.++..--+.||+
T Consensus         2 kVLl~Ca~GmSSs~la~~m~k~A~~~gi~~~i~A~~~~~   40 (99)
T cd05565           2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGS   40 (99)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECHH
T ss_conf             099990798858999999999999819976999510344


No 137
>KOG1315 consensus
Probab=39.43  E-value=12  Score=16.90  Aligned_cols=21  Identities=29%  Similarity=0.730  Sum_probs=13.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             162888655556688998687789999
Q gi|254781031|r  202 TCYLGKRDKRYEWGYGCNSCPACYLRQ  228 (240)
Q Consensus       202 SC~~~~~~~~~~~~~hCG~C~~C~~R~  228 (240)
                      .|++|.+.      .||..|.-|+++-
T Consensus       116 ~~iKPdRa------HHCsvC~rCvLKm  136 (307)
T KOG1315         116 KCIKPDRA------HHCSVCNRCVLKM  136 (307)
T ss_pred             CCCCCCCC------CCCHHHHHHHHCC
T ss_conf             65268856------6650645320035


No 138
>TIGR00725 TIGR00725 conserved hypothetical protein TIGR00725; InterPro: IPR005268    This family of conserved hypothetical proteins has no known function. .
Probab=39.27  E-value=14  Score=16.36  Aligned_cols=37  Identities=24%  Similarity=0.316  Sum_probs=21.1

Q ss_pred             HHHCCCCCEEEEEECCHHHHH--HHHHHHHCCCEEEEEE
Q ss_conf             221359948999809656999--9999997498399999
Q gi|254781031|r    3 DIIKKAPSALLLFSGGQDSST--CLSWALDRFDRVETLS   39 (240)
Q Consensus         3 ~~~~~~~~av~l~SGGlDS~~--~l~~l~~~~~~v~~i~   39 (240)
                      ++.|+.+.-++|++||+|=.-  ..--++++|=-|+.|-
T Consensus        28 ~~AK~gPsd~~l~~GGr~GvME~~s~G~~~~GGlVVGIL   66 (176)
T TIGR00725        28 ELAKKGPSDHILINGGRGGVMEAVSKGAREKGGLVVGIL   66 (176)
T ss_pred             HHHHHCCCCEEEEECCCCCEEEEEEECEECCCCEEEEEC
T ss_conf             998619997899947998445424522010678799980


No 139
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=39.25  E-value=25  Score=14.85  Aligned_cols=14  Identities=7%  Similarity=-0.235  Sum_probs=5.4

Q ss_pred             HHHHHHCCCEEEEE
Q ss_conf             99999749839999
Q gi|254781031|r   25 LSWALDRFDRVETL   38 (240)
Q Consensus        25 l~~l~~~~~~v~~i   38 (240)
                      |+.+++++-+.++|
T Consensus         6 A~e~L~~~~~~~lI   19 (117)
T cd01522           6 AWALLQADPQAVLV   19 (117)
T ss_pred             HHHHHHHCCCEEEE
T ss_conf             99999849983999


No 140
>KOG0316 consensus
Probab=38.63  E-value=3.5  Score=20.16  Aligned_cols=30  Identities=23%  Similarity=0.089  Sum_probs=21.3

Q ss_pred             HCCCCCEEEEEECCHHHHHHHHHHHHCCCE
Q ss_conf             135994899980965699999999974983
Q gi|254781031|r    5 IKKAPSALLLFSGGQDSSTCLSWALDRFDR   34 (240)
Q Consensus         5 ~~~~~~av~l~SGGlDS~~~l~~l~~~~~~   34 (240)
                      .+.++.+-+++||++||++-+|.-..+..+
T Consensus       107 V~fNeesSVv~SgsfD~s~r~wDCRS~s~e  136 (307)
T KOG0316         107 VRFNEESSVVASGSFDSSVRLWDCRSRSFE  136 (307)
T ss_pred             EEECCCCEEEEECCCCCEEEEEECCCCCCC
T ss_conf             996575308995344641688872368987


No 141
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B; InterPro: IPR011842    This entry describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebsiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in Escherichia coli. Based on this latter finding, it is suggested  that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme .; GO: 0006810 transport, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=37.59  E-value=27  Score=14.69  Aligned_cols=22  Identities=23%  Similarity=0.175  Sum_probs=20.3

Q ss_pred             CEEEEEECCHHHHHHHHHHHHC
Q ss_conf             4899980965699999999974
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDR   31 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~   31 (240)
                      .+|||.+|=+|-+++|..|.|.
T Consensus        82 ~~V~Lt~g~iDH~tGLL~LREg  103 (314)
T TIGR02108        82 EGVVLTDGEIDHVTGLLSLREG  103 (314)
T ss_pred             EEEEECCCCHHHHHHHHHHCCC
T ss_conf             4788206622456412333037


No 142
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=37.55  E-value=13  Score=16.55  Aligned_cols=12  Identities=33%  Similarity=0.772  Sum_probs=10.4

Q ss_pred             CCCCCCHHHHHH
Q ss_conf             899868778999
Q gi|254781031|r  216 YGCNSCPACYLR  227 (240)
Q Consensus       216 ~hCG~C~~C~~R  227 (240)
                      .|||.|..|++.
T Consensus       185 ~~Cg~C~~Cida  196 (337)
T COG1600         185 DHCGSCTRCLDA  196 (337)
T ss_pred             CCCHHHHHHHHH
T ss_conf             757216899863


No 143
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=37.04  E-value=27  Score=14.64  Aligned_cols=18  Identities=17%  Similarity=0.161  Sum_probs=5.8

Q ss_pred             EECCHHHHHHHHHHHHCC
Q ss_conf             809656999999999749
Q gi|254781031|r   15 FSGGQDSSTCLSWALDRF   32 (240)
Q Consensus        15 ~SGGlDS~~~l~~l~~~~   32 (240)
                      .-+|..|..++..|.+.|
T Consensus        65 C~~G~rS~~aa~~L~~~G   82 (104)
T PRK00162         65 CYHGNSSQGAAQYLLQQG   82 (104)
T ss_pred             ECCCHHHHHHHHHHHHCC
T ss_conf             598818999999999737


No 144
>PTZ00200 cysteine proteinase precursor; Provisional
Probab=35.90  E-value=19  Score=15.65  Aligned_cols=12  Identities=42%  Similarity=0.775  Sum_probs=7.6

Q ss_pred             CCCCCCCCCCHH
Q ss_conf             566889986877
Q gi|254781031|r  212 YEWGYGCNSCPA  223 (240)
Q Consensus       212 ~~~~~hCG~C~~  223 (240)
                      .+++.+||-||+
T Consensus       250 KdQG~~CGSCWA  261 (448)
T PTZ00200        250 KDQGLNCGSCWA  261 (448)
T ss_pred             CCCCCCCCHHHH
T ss_conf             338999747799


No 145
>TIGR00888 guaA_Nterm GMP synthase, N-terminal domain; InterPro: IPR004739   The N-terminal region of GMP synthase 6.3.5.2 from EC is recognised by this signature. GMP synthase catalyzes the synthesis of GMP from XMP , .  ATP + xanthosine 5'-phosphate + L-glutamine + H(2)O = AMP + diphosphate + GMP + L-glutamate ; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006177 GMP biosynthetic process.
Probab=35.78  E-value=18  Score=15.77  Aligned_cols=19  Identities=37%  Similarity=0.712  Sum_probs=14.2

Q ss_pred             HHHCCCCCEEEEEECCHHHH
Q ss_conf             22135994899980965699
Q gi|254781031|r    3 DIIKKAPSALLLFSGGQDSS   22 (240)
Q Consensus         3 ~~~~~~~~av~l~SGGlDS~   22 (240)
                      ++-+..+|.| -||||.+|.
T Consensus        36 eI~~~~P~Gi-ILSGGP~sv   54 (195)
T TIGR00888        36 EIKEKNPKGI-ILSGGPASV   54 (195)
T ss_pred             HHHHCCCCEE-EEECCCCCC
T ss_conf             9861298679-972788764


No 146
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=35.60  E-value=16  Score=16.01  Aligned_cols=32  Identities=19%  Similarity=-0.009  Sum_probs=17.1

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHCCC-EEEEEEE
Q ss_conf             99489998096569999999997498-3999997
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDRFD-RVETLSF   40 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~~~-~v~~i~~   40 (240)
                      .+++++.=.|++= +..+..++..|. +|+.+-.
T Consensus       121 g~~V~V~G~G~iG-l~~~~~a~~~Ga~~Vi~~d~  153 (280)
T TIGR03366       121 GRRVLVVGAGMLG-LTAAAAAAAAGAARVVAADP  153 (280)
T ss_pred             CCEEEEEECCHHH-HHHHHHHHHCCCCEEEEEEC
T ss_conf             9989999078689-99999999849987999919


No 147
>PRK13685 hypothetical protein; Provisional
Probab=34.81  E-value=30  Score=14.42  Aligned_cols=14  Identities=7%  Similarity=-0.163  Sum_probs=5.4

Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             89889999999982
Q gi|254781031|r  174 WLKKYETWKLAQDI  187 (240)
Q Consensus       174 ~~tK~eI~~~~~~~  187 (240)
                      -.+..+.-+...++
T Consensus       273 A~d~~~L~~Iy~~i  286 (326)
T PRK13685        273 AASLEELRAVYATL  286 (326)
T ss_pred             CCCHHHHHHHHHHH
T ss_conf             19999999999996


No 148
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=34.02  E-value=30  Score=14.34  Aligned_cols=32  Identities=19%  Similarity=0.097  Sum_probs=12.0

Q ss_pred             HHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             997498399999767788777279999999999
Q gi|254781031|r   28 ALDRFDRVETLSFDYGQRNKVELECRLCVRKKI   60 (240)
Q Consensus        28 l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~   60 (240)
                      +.+.+.-.|+.-| .|.+--+..-.|...++.+
T Consensus        32 ai~~~ri~HAyLF-~GprGtGKTT~ArilAkaL   63 (462)
T PRK06305         32 ALRFNRAAHAYLF-SGIRGTGKTTLARIFAKAL   63 (462)
T ss_pred             HHHCCCCCCEEEE-ECCCCCCHHHHHHHHHHHH
T ss_conf             9984997623430-3899859999999999996


No 149
>KOG0272 consensus
Probab=33.64  E-value=14  Score=16.49  Aligned_cols=17  Identities=24%  Similarity=0.022  Sum_probs=8.9

Q ss_pred             EEECCHHHHHHHHHHHH
Q ss_conf             98096569999999997
Q gi|254781031|r   14 LFSGGQDSSTCLSWALD   30 (240)
Q Consensus        14 l~SGGlDS~~~l~~l~~   30 (240)
                      ..|||+||+.-.|++..
T Consensus       318 ~~tGGlD~~~RvWDlRt  334 (459)
T KOG0272         318 AATGGLDSLGRVWDLRT  334 (459)
T ss_pred             EECCCCCCHHHEEECCC
T ss_conf             65267631010022156


No 150
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=33.05  E-value=32  Score=14.24  Aligned_cols=37  Identities=16%  Similarity=0.053  Sum_probs=27.0

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHH----HCCCEEEEEEEECC
Q ss_conf             59948999809656999999999----74983999997677
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWAL----DRFDRVETLSFDYG   43 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~----~~~~~v~~i~~~yg   43 (240)
                      ..|-+++++||=+|=...+..+.    ..|++|.-.+..+|
T Consensus         2 ~~k~~IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwG   42 (137)
T COG2210           2 DKKLGIILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWG   42 (137)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEHHH
T ss_conf             84579999579788999999999999976975899986788


No 151
>KOG1372 consensus
Probab=32.65  E-value=32  Score=14.20  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=27.6

Q ss_pred             HHCCCCCEEEEEEC--CHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             21359948999809--6569999999997498399999
Q gi|254781031|r    4 IIKKAPSALLLFSG--GQDSSTCLSWALDRFDRVETLS   39 (240)
Q Consensus         4 ~~~~~~~av~l~SG--GlDS~~~l~~l~~~~~~v~~i~   39 (240)
                      +-....+-|.|..|  |-|-+-++-.|+++||+||.|-
T Consensus        22 ~~~~r~rkvALITGItGQDGSYLaEfLL~KgYeVHGii   59 (376)
T KOG1372          22 LGAFRPRKVALITGITGQDGSYLAEFLLSKGYEVHGII   59 (376)
T ss_pred             HCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEEE
T ss_conf             05766541799962368872699999870885676788


No 152
>KOG0823 consensus
Probab=31.63  E-value=17  Score=15.85  Aligned_cols=22  Identities=23%  Similarity=0.218  Sum_probs=9.5

Q ss_pred             CCCEEEEEECCHHHHHHHHHHH
Q ss_conf             9948999809656999999999
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWAL   29 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~   29 (240)
                      .+..||-+=|=|===-++|.++
T Consensus        57 akdPVvTlCGHLFCWpClyqWl   78 (230)
T KOG0823          57 AKDPVVTLCGHLFCWPCLYQWL   78 (230)
T ss_pred             CCCCEEEECCCCEEHHHHHHHH
T ss_conf             5787774145430348888877


No 153
>pfam01799 Fer2_2 [2Fe-2S] binding domain.
Probab=30.91  E-value=19  Score=15.65  Aligned_cols=12  Identities=17%  Similarity=0.335  Sum_probs=4.3

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             430247777767
Q gi|254781031|r  146 CRHDTIRAIETA  157 (240)
Q Consensus       146 ~~~~~~~~~~~~  157 (240)
                      ++|.+......+
T Consensus        29 CtPG~ims~~~l   40 (75)
T pfam01799        29 CTPGMVMAATAL   40 (75)
T ss_pred             CCHHHHHHHHHH
T ss_conf             750499999999


No 154
>KOG1312 consensus
Probab=30.53  E-value=19  Score=15.60  Aligned_cols=14  Identities=29%  Similarity=0.669  Sum_probs=12.0

Q ss_pred             CCCCCCCHHHHHHH
Q ss_conf             88998687789999
Q gi|254781031|r  215 GYGCNSCPACYLRQ  228 (240)
Q Consensus       215 ~~hCG~C~~C~~R~  228 (240)
                      ..||-.|-.|.+|=
T Consensus       162 SKHCsiCNrCV~rf  175 (341)
T KOG1312         162 SKHCSICNRCVHRF  175 (341)
T ss_pred             CCCCHHHHHHHHHH
T ss_conf             34133888999874


No 155
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=30.29  E-value=35  Score=13.95  Aligned_cols=16  Identities=19%  Similarity=0.325  Sum_probs=8.9

Q ss_pred             EECCHHHHHHHHHHHH
Q ss_conf             8096569999999997
Q gi|254781031|r   15 FSGGQDSSTCLSWALD   30 (240)
Q Consensus        15 ~SGGlDS~~~l~~l~~   30 (240)
                      +..|+|-...+-.|++
T Consensus       284 ~~~G~Dp~~iL~dLLe  299 (600)
T PRK09111        284 YDAGADPVVVLRDLAE  299 (600)
T ss_pred             HHHCCCHHHHHHHHHH
T ss_conf             9859899999999999


No 156
>KOG0270 consensus
Probab=30.23  E-value=4.3  Score=19.64  Aligned_cols=19  Identities=26%  Similarity=0.118  Sum_probs=16.1

Q ss_pred             EEEECCHHHHHHHHHHHHC
Q ss_conf             9980965699999999974
Q gi|254781031|r   13 LLFSGGQDSSTCLSWALDR   31 (240)
Q Consensus        13 ~l~SGGlDS~~~l~~l~~~   31 (240)
                      +|.|||.|+++.+|.+-..
T Consensus       258 VLaSgsaD~TV~lWD~~~g  276 (463)
T KOG0270         258 VLASGSADKTVKLWDVDTG  276 (463)
T ss_pred             EEEECCCCCEEEEEECCCC
T ss_conf             6773478743899876778


No 157
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating); InterPro: IPR013357   Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NAD(P) as a cofactor. In eukaryotes, at least twenty distinct aldehyde dehydrogenase families have been classified . Many aldehyde dehydrogenases have also been found in prokaryotic species. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase, though these residues are not necessarily conserved in all the enzymes of this family.   The acetaldehyde dehydrogenase family (1.2.1.10 from EC) of bacterial enzymes catalyse the formation of acetyl-CoA from acetaldehyde in the degradation of phenols, cresols and catechol . Proteins in this entry occur in bacterial species and are annotated as probable acetaldehyde dehydrogenases, though this function has not been experimentally verified..
Probab=30.03  E-value=31  Score=14.26  Aligned_cols=20  Identities=30%  Similarity=0.675  Sum_probs=17.0

Q ss_pred             CHHHCCCCCEEEEEECCHHH
Q ss_conf             12213599489998096569
Q gi|254781031|r    2 NDIIKKAPSALLLFSGGQDS   21 (240)
Q Consensus         2 ~~~~~~~~~av~l~SGGlDS   21 (240)
                      |+|||.++.+|+|=.||-==
T Consensus       180 neLMK~kdts~IlATGG~aM  199 (528)
T TIGR02518       180 NELMKNKDTSLILATGGEAM  199 (528)
T ss_pred             HHHHCCCCEEEEEECCCHHH
T ss_conf             55402468068996077025


No 158
>TIGR01488 HAD-SF-IB HAD-superfamily hydrolase, subfamily IB (PSPase-like); InterPro: IPR006383   This group represents a subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. Subfamily IA, B, C and D are distinguished from the rest of the superfamily by the presence of a variable domain between the first and second conserved catalytic motifs. In subfamilies IA and IB, this domain consists of an alpha-helical bundle. It was necessary to model these two subfamilies separately, breaking them at an apparent phylogenetic bifurcation, so that the resulting model(s) are not so broadly defined that members of subfamily III (which lack the variable domain) are included. ; GO: 0016791 phosphoric monoester hydrolase activity, 0008152 metabolic process.
Probab=29.83  E-value=36  Score=13.90  Aligned_cols=12  Identities=17%  Similarity=-0.155  Sum_probs=5.7

Q ss_pred             ECCCCHHHHHHH
Q ss_conf             138988999999
Q gi|254781031|r  172 LMWLKKYETWKL  183 (240)
Q Consensus       172 ~~~~tK~eI~~~  183 (240)
                      -.+..|..+++.
T Consensus       161 ~~~~~K~~~~~~  172 (204)
T TIGR01488       161 VEGEEKGKVLKE  172 (204)
T ss_pred             CCCCCHHHHHHH
T ss_conf             552203899999


No 159
>PRK11433 putative xanthine dehydrogenase iron-sulfur-binding subunit; Provisional
Probab=29.74  E-value=24  Score=14.95  Aligned_cols=12  Identities=25%  Similarity=0.880  Sum_probs=8.2

Q ss_pred             CCCCCCCHHHHH
Q ss_conf             889986877899
Q gi|254781031|r  215 GYGCNSCPACYL  226 (240)
Q Consensus       215 ~~hCG~C~~C~~  226 (240)
                      ..|||+|.|=+.
T Consensus       144 a~QCGyCTPG~i  155 (217)
T PRK11433        144 GFQCGYCTPGQI  155 (217)
T ss_pred             CCCCCCCHHHHH
T ss_conf             997988848999


No 160
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=29.57  E-value=23  Score=15.06  Aligned_cols=18  Identities=11%  Similarity=0.388  Sum_probs=9.5

Q ss_pred             CCCCCCCHHHHHH-HHHHH
Q ss_conf             8899868778999-99999
Q gi|254781031|r  215 GYGCNSCPACYLR-QKGWM  232 (240)
Q Consensus       215 ~~hCG~C~~C~~R-~~af~  232 (240)
                      ..|||+|.|=+.= -+|++
T Consensus       100 a~QCGyCtPG~im~~~alL  118 (159)
T PRK09908        100 AVQCGFCTPGLIMATTAML  118 (159)
T ss_pred             CCCCCCCHHHHHHHHHHHH
T ss_conf             9808897389999999999


No 161
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=29.09  E-value=20  Score=15.51  Aligned_cols=19  Identities=11%  Similarity=0.039  Sum_probs=7.3

Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q ss_conf             9986877899999999730
Q gi|254781031|r  217 GCNSCPACYLRQKGWMEFK  235 (240)
Q Consensus       217 hCG~C~~C~~R~~af~~~~  235 (240)
                      |+..-.-+++|-.-+.|.|
T Consensus       237 H~~vae~~lerAkRlvE~G  255 (416)
T PRK09376        237 HVQVAEMVIEKAKRLVEHG  255 (416)
T ss_pred             HHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999998769


No 162
>KOG0509 consensus
Probab=28.02  E-value=36  Score=13.86  Aligned_cols=57  Identities=21%  Similarity=0.176  Sum_probs=29.2

Q ss_pred             CCEEEEEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             32167753138988999999998282000143255372162888655556688998687789999
Q gi|254781031|r  164 SHVTVHTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQ  228 (240)
Q Consensus       164 ~~~~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~~~~~~~~~hCG~C~~C~~R~  228 (240)
                      .+..+.-+.-...+..|.++. +.+..+... -|=.|-.+.+|.+      ..||+.|-.|+.|=
T Consensus       391 sDPg~i~~~~~~~~~tIs~l~-d~gkf~~en-~FC~~clirKp~r------Skhc~vcnrcVarf  447 (600)
T KOG0509         391 SDPGFIPTSTEVGRETISQLI-DFGKFDLEN-RFCLTCLIRKPLR------SKHCSVCNRCVARF  447 (600)
T ss_pred             CCCCCCCCCHHHHHHHHHHHH-CCCCCCCCC-CCEEEEEEECCCC------CCHHHHHHHHHHCC
T ss_conf             588987774236788999765-005323323-4120566314774------30415667777422


No 163
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=28.00  E-value=26  Score=14.74  Aligned_cols=12  Identities=25%  Similarity=0.894  Sum_probs=7.8

Q ss_pred             CCCCCCCHHHHH
Q ss_conf             889986877899
Q gi|254781031|r  215 GYGCNSCPACYL  226 (240)
Q Consensus       215 ~~hCG~C~~C~~  226 (240)
                      ..|||+|.|=+.
T Consensus        95 a~QCGyCtPG~v  106 (151)
T TIGR03198        95 GFQCGYCTPGMV  106 (151)
T ss_pred             CCCCCCCHHHHH
T ss_conf             983898738999


No 164
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc  pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=27.59  E-value=35  Score=13.96  Aligned_cols=21  Identities=33%  Similarity=0.551  Sum_probs=17.9

Q ss_pred             HHHCCCCCEEEEEECCHHHHH
Q ss_conf             221359948999809656999
Q gi|254781031|r    3 DIIKKAPSALLLFSGGQDSST   23 (240)
Q Consensus         3 ~~~~~~~~av~l~SGGlDS~~   23 (240)
                      +.+++.|-||+++.||+=+..
T Consensus         9 ~~i~~gkvavv~laGG~GTrl   29 (323)
T cd04193           9 KAIAEGKVAVLLLAGGQGTRL   29 (323)
T ss_pred             HHHHCCCEEEEEECCCCCCCC
T ss_conf             999749989999578874556


No 165
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=27.53  E-value=33  Score=14.15  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=25.6

Q ss_pred             CHHHCCCCCEEEEEECCHHHHHHHHHHH-H---C-C---CEEEEEEEEC
Q ss_conf             1221359948999809656999999999-7---4-9---8399999767
Q gi|254781031|r    2 NDIIKKAPSALLLFSGGQDSSTCLSWAL-D---R-F---DRVETLSFDY   42 (240)
Q Consensus         2 ~~~~~~~~~av~l~SGGlDS~~~l~~l~-~---~-~---~~v~~i~~~y   42 (240)
                      .+.+++++++++.+|||-- ...+|..+ +   + .   .+++..+.|-
T Consensus        12 ~~~i~~~~~~~ialsGG~t-P~~~y~~L~~~~~~~~i~w~~v~~f~~DE   59 (232)
T cd01399          12 AELIREKPPAVLGLATGST-PLGVYEELIELHKEGGLSFSNVTTFNLDE   59 (232)
T ss_pred             HHHHHHCCCEEEEECCCCC-HHHHHHHHHHHHHHCCCCHHHEEEEECCC
T ss_conf             9999977986999899878-99999999998863499757938992742


No 166
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase; InterPro: IPR011800    Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulphate reductase catalyzes the reduction of 3'-phosphoadenylylsulphate (PAPS) to sulphite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (IPR004508 from INTERPRO) and bacterial (IPR011798 from INTERPRO) enzymes preferring 5'-adenylylsulphate (APS) over PAPS as a substrate for reduction to sulphite.; GO: 0004604 phosphoadenylyl-sulfate reductase (thioredoxin) activity, 0019344 cysteine biosynthetic process.
Probab=26.25  E-value=41  Score=13.51  Aligned_cols=192  Identities=9%  Similarity=-0.085  Sum_probs=85.6

Q ss_pred             CEEEEEECCHHHHHHHHHHHHCC----CEEEEEEEECCCCCCCCHHHHHHHHHHHH-HHHHHHHHCCCCCEEEECHHHCC
Q ss_conf             48999809656999999999749----83999997677887772799999999999-99888752035615875011032
Q gi|254781031|r   10 SALLLFSGGQDSSTCLSWALDRF----DRVETLSFDYGQRNKVELECRLCVRKKIV-ELMPKWKDSLGEDHILPLAILGD   84 (240)
Q Consensus        10 ~av~l~SGGlDS~~~l~~l~~~~----~~v~~i~~~ygq~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   84 (240)
                      .-|..=|=|+|.+|.+.++-+--    ..|..|++|.|.--.-+.+....+.+++. .....+.-+......-.......
T Consensus        29 ~Lv~tsaFg~~~lV~~hll~~~~keky~~~pvif~DTly~F~~Tl~l~~~~~~~y~qPkn~~L~~~~~~~~~s~a~~~Ak  108 (239)
T TIGR02057        29 ELVQTSAFGIQALVILHLLSSILKEKYPDIPVIFIDTLYLFPQTLELVDELTEKYKQPKNLDLNLYKYDDVESEAAFEAK  108 (239)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHH
T ss_conf             74530102047899999999987621799867862111362789999999999862765563303316888878989744


Q ss_pred             CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             24443322201100012331011111112233377777743399365114544443455544302477777677530643
Q gi|254781031|r   85 ISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMES  164 (240)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (240)
                      +....-..  +.....     -+-..+..-.+.-+   --.+++.+.++|..++.+ .+|.+-+.+..       ....+
T Consensus       109 YG~~l~~K--D~~~~~-----~Y~~~~KvEP~~RA---lkEL~~~Aw~tG~Rr~Q~-~~R~nL~v~~~-------D~~~G  170 (239)
T TIGR02057       109 YGKLLWQK--DVEKLE-----KYDDIAKVEPMQRA---LKELNAVAWFTGRRRDQA-SARANLPVLEL-------DLQNG  170 (239)
T ss_pred             HHHHHHCC--CHHHHH-----HHCCCCCCCHHHHH---HHHHHHHHHHHCCCHHHH-CCCCCCCCEEE-------ECCCC
T ss_conf             20465405--722233-----21343443623355---688889998742554342-02236861000-------01478


Q ss_pred             CEEEEEEECCCCHHHHHHHHHHHCCCHHCCCC-----HHHCCCC---CCC---C-CCCCCC-CCCCCCC
Q ss_conf             21677531389889999999982820001432-----5537216---288---8-655556-6889986
Q gi|254781031|r  165 HVTVHTPLMWLKKYETWKLAQDIGGQDLVNLI-----LEESHTC---YLG---K-RDKRYE-WGYGCNS  220 (240)
Q Consensus       165 ~~~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~-----~~~T~SC---~~~---~-~~~~~~-~~~hCG~  220 (240)
                       +--++|++++|..+|.+...+.+...-.-.+     .+.++|-   ..+   + ..++.+ .++-||.
T Consensus       171 -~lKv~Pl~~W~~~~~~~Y~~~h~v~Y~pL~D~GY~SiGD~H~t~k~~~G~~e~r~gRf~G~~K~ECGl  238 (239)
T TIGR02057       171 -ILKVNPLIDWTRKQVYQYLAAHKVPYNPLFDQGYLSIGDEHSTRKVKEGEDERRAGRFKGKLKTECGL  238 (239)
T ss_pred             -CCEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
T ss_conf             -10320210265022799998678846842227866507757888877763122213532787663578


No 167
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=26.15  E-value=42  Score=13.50  Aligned_cols=27  Identities=7%  Similarity=-0.113  Sum_probs=13.1

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHCCCE
Q ss_conf             994899980965699999999974983
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDRFDR   34 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~~~~   34 (240)
                      .+..|+..+.|.-|...+..|++.|++
T Consensus        61 ~~~ivv~C~~G~rS~~aa~~L~~~G~~   87 (110)
T COG0607          61 DDPIVVYCASGVRSAAAAAALKLAGFT   87 (110)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf             986999999975589999999986997


No 168
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=25.74  E-value=42  Score=13.45  Aligned_cols=29  Identities=10%  Similarity=-0.089  Sum_probs=25.2

Q ss_pred             EEEEECCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             99980965699999999974983999997
Q gi|254781031|r   12 LLLFSGGQDSSTCLSWALDRFDRVETLSF   40 (240)
Q Consensus        12 v~l~SGGlDS~~~l~~l~~~~~~v~~i~~   40 (240)
                      |+..-||+=++++|+.|.+.|++|...--
T Consensus         3 Vai~GaG~AgL~~a~~La~~g~~vt~~ea   31 (485)
T COG3349           3 VAIAGAGLAGLAAAYELADAGYDVTLYEA   31 (485)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             89974627888999999868985399842


No 169
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=25.46  E-value=29  Score=14.48  Aligned_cols=12  Identities=25%  Similarity=0.703  Sum_probs=7.1

Q ss_pred             CCCCCCCHHHHH
Q ss_conf             889986877899
Q gi|254781031|r  215 GYGCNSCPACYL  226 (240)
Q Consensus       215 ~~hCG~C~~C~~  226 (240)
                      ..|||+|.|=+.
T Consensus        94 a~QCGfCtPG~v  105 (148)
T TIGR03193        94 GTQCGFCTPGMI  105 (148)
T ss_pred             CCCCCCCCHHHH
T ss_conf             987798844799


No 170
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744    This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=25.37  E-value=43  Score=13.41  Aligned_cols=47  Identities=15%  Similarity=0.145  Sum_probs=22.5

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             753138988999999998282000143255372162888655556688998687789999
Q gi|254781031|r  169 HTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQ  228 (240)
Q Consensus       169 ~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~~~~~~~~~hCG~C~~C~~R~  228 (240)
                      +.-=-+.||++|..-..+-+....-++     -+|        ...++-||-|.|=++-.
T Consensus       430 IC~Cn~VtKG~l~~Ai~~~~c~~v~~~-----K~C--------T~A~~SCGGC~PLv~~~  476 (813)
T TIGR02374       430 ICSCNDVTKGALIAAIQEGSCSTVEEL-----KAC--------TKAGTSCGGCKPLVEQL  476 (813)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCHHHH-----HHH--------CCCCCCCCCCCHHHHHH
T ss_conf             126788577899999842789876998-----600--------26788998762368999


No 171
>TIGR02951 DMSO_dmsB dimethylsulfoxide reductase, chain B; InterPro: IPR014297   This family consists of the iron-sulphur subunit, or chain B, of the anaerobic dimethyl sulphoxide reductase enzyme. Chains A and B are catalytic, while chain C is a membrane anchor..
Probab=24.98  E-value=36  Score=13.87  Aligned_cols=30  Identities=17%  Similarity=0.141  Sum_probs=21.5

Q ss_pred             HHCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHH
Q ss_conf             53721628886555-566889986877899999
Q gi|254781031|r  198 EESHTCYLGKRDKR-YEWGYGCNSCPACYLRQK  229 (240)
Q Consensus       198 ~~T~SC~~~~~~~~-~~~~~hCG~C~~C~~R~~  229 (240)
                      .-.|||  |..+++ ..+..|=++|--|++|.+
T Consensus       103 yC~waC--PYgAPQy~~~~G~m~KCDgC~D~~~  133 (162)
T TIGR02951       103 YCVWAC--PYGAPQYDEQQGVMSKCDGCVDRVE  133 (162)
T ss_pred             CCCCCC--CCCCCCCCCCCCEEEECCCCHHHHH
T ss_conf             456458--7887673334774442134367884


No 172
>pfam08240 ADH_N Alcohol dehydrogenase GroES-like domain. This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure.
Probab=24.90  E-value=33  Score=14.11  Aligned_cols=13  Identities=31%  Similarity=0.802  Sum_probs=9.3

Q ss_pred             CCCCCCHHHHHHH
Q ss_conf             8998687789999
Q gi|254781031|r  216 YGCNSCPACYLRQ  228 (240)
Q Consensus       216 ~hCG~C~~C~~R~  228 (240)
                      .+||.|..|..-+
T Consensus        64 ~~Cg~C~~C~~G~   76 (108)
T pfam08240        64 IPCGKCAACREGR   76 (108)
T ss_pred             CCCCCCHHHHCCC
T ss_conf             4899897895909


No 173
>KOG4283 consensus
Probab=23.91  E-value=6  Score=18.69  Aligned_cols=19  Identities=26%  Similarity=0.349  Sum_probs=14.9

Q ss_pred             EEEECCHHHHHHHHHHHHC
Q ss_conf             9980965699999999974
Q gi|254781031|r   13 LLFSGGQDSSTCLSWALDR   31 (240)
Q Consensus        13 ~l~SGGlDS~~~l~~l~~~   31 (240)
                      .|+|||-|+++.+|+|...
T Consensus        58 ymlSGgadgsi~v~Dl~n~   76 (397)
T KOG4283          58 YMLSGGADGSIAVFDLQNA   76 (397)
T ss_pred             EEEECCCCCCEEEEEECCC
T ss_conf             8860477762799970246


No 174
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=23.69  E-value=43  Score=13.41  Aligned_cols=40  Identities=23%  Similarity=0.092  Sum_probs=25.6

Q ss_pred             CHHHCCCCCEEEEEECCHHHHHHHHH-HHHCC----CEEEEEEEEC
Q ss_conf             12213599489998096569999999-99749----8399999767
Q gi|254781031|r    2 NDIIKKAPSALLLFSGGQDSSTCLSW-ALDRF----DRVETLSFDY   42 (240)
Q Consensus         2 ~~~~~~~~~av~l~SGGlDS~~~l~~-l~~~~----~~v~~i~~~y   42 (240)
                      ++.++.++++++.+|||-- ...+|. |.++.    .+++....|-
T Consensus        16 ~~~i~~~~~~~l~lsGGst-p~~~y~~L~~~~~ldw~~v~~~~~DE   60 (219)
T cd01400          16 AAAIAKRGRFSLALSGGST-PKPLYELLAAAPALDWSKVHVFLGDE   60 (219)
T ss_pred             HHHHHHCCCEEEEECCCCC-HHHHHHHHHHCCCCCCHHEEEEEEEC
T ss_conf             9999977988999848977-99999998554589903638996003


No 175
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent; InterPro: IPR014184   Members of this entry represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols. This entry includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this entry have a tightly bound NAD that can act as a true cofactor, rather than a co-substrate in dehydrogenase reactions and in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent..
Probab=23.56  E-value=18  Score=15.73  Aligned_cols=10  Identities=30%  Similarity=1.002  Sum_probs=3.7

Q ss_pred             CCCCHHHHHH
Q ss_conf             9868778999
Q gi|254781031|r  218 CNSCPACYLR  227 (240)
Q Consensus       218 CG~C~~C~~R  227 (240)
                      ||+|..|.++
T Consensus       106 CGrC~~C~~~  115 (403)
T TIGR02819       106 CGRCRNCKEQ  115 (403)
T ss_pred             CCCCCCCCCC
T ss_conf             5620011245


No 176
>KOG1311 consensus
Probab=23.51  E-value=17  Score=15.88  Aligned_cols=15  Identities=33%  Similarity=0.749  Sum_probs=11.0

Q ss_pred             CCCCCCCCHHHHHHH
Q ss_conf             688998687789999
Q gi|254781031|r  214 WGYGCNSCPACYLRQ  228 (240)
Q Consensus       214 ~~~hCG~C~~C~~R~  228 (240)
                      ...||=.|--|++|.
T Consensus       126 Rs~HCsvC~~CV~rf  140 (299)
T KOG1311         126 RSSHCSVCNNCVLRF  140 (299)
T ss_pred             CCCCCCCCCCEECCC
T ss_conf             775361014700787


No 177
>PRK10509 bacterioferritin-associated ferredoxin; Provisional
Probab=23.42  E-value=27  Score=14.63  Aligned_cols=41  Identities=12%  Similarity=0.178  Sum_probs=20.3

Q ss_pred             CCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             898899999999828200014325537216288865555668899868778999
Q gi|254781031|r  174 WLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLR  227 (240)
Q Consensus       174 ~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~~~~~~~~~hCG~C~~C~~R  227 (240)
                      ..|-.+|.+...+.+...+-++     ..+        -.-+.+||+|..+...
T Consensus         8 gVTDk~Ir~AV~~~g~~S~r~l-----r~~--------l~vgsqCGKC~~~Ar~   48 (64)
T PRK10509          8 GVSDKKIRQAVRQFHPQSFQQL-----RKF--------IPVGNQCGKCIRAARE   48 (64)
T ss_pred             CCCHHHHHHHHHHCCCCCHHHH-----HHH--------CCCCCCCCHHHHHHHH
T ss_conf             8458999999998297669999-----987--------4754656088999999


No 178
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809   There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC)  is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC)  is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits.   This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=23.39  E-value=44  Score=13.36  Aligned_cols=25  Identities=4%  Similarity=-0.102  Sum_probs=17.0

Q ss_pred             CCCCCEE--EEEEECCCCHHHHHHHHH
Q ss_conf             0643216--775313898899999999
Q gi|254781031|r  161 GMESHVT--VHTPLMWLKKYETWKLAQ  185 (240)
Q Consensus       161 ~~~~~~~--i~~P~~~~tK~eI~~~~~  185 (240)
                      .+..+|+  ++|=|=+.+..+.|..+-
T Consensus       306 LsD~~VKvvfiNIFGGI~RCD~vA~G~  332 (389)
T TIGR01016       306 LSDKSVKVVFINIFGGITRCDEVAKGL  332 (389)
T ss_pred             HCCCCCEEEEEEECCCEECHHHHHHHH
T ss_conf             359982089997068600187887889


No 179
>KOG4533 consensus
Probab=22.25  E-value=48  Score=13.11  Aligned_cols=18  Identities=44%  Similarity=0.720  Sum_probs=12.7

Q ss_pred             HHHCCCCCEEEEEECCHH
Q ss_conf             221359948999809656
Q gi|254781031|r    3 DIIKKAPSALLLFSGGQD   20 (240)
Q Consensus         3 ~~~~~~~~av~l~SGGlD   20 (240)
                      |...+....++|||||--
T Consensus       127 d~~~~DdeslLlfsgg~t  144 (317)
T KOG4533         127 DVPNFDDESLLLFSGGKT  144 (317)
T ss_pred             CCCCCCCCEEEEEECCCC
T ss_conf             666778621355307631


No 180
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=22.12  E-value=37  Score=13.82  Aligned_cols=10  Identities=20%  Similarity=0.743  Sum_probs=4.5

Q ss_pred             CCCCCCHHHH
Q ss_conf             8998687789
Q gi|254781031|r  216 YGCNSCPACY  225 (240)
Q Consensus       216 ~hCG~C~~C~  225 (240)
                      .+||+|.|=.
T Consensus        98 ~QCGyCtpG~  107 (156)
T COG2080          98 FQCGYCTPGQ  107 (156)
T ss_pred             CCCCCCCHHH
T ss_conf             7578884889


No 181
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=22.06  E-value=42  Score=13.47  Aligned_cols=33  Identities=12%  Similarity=0.148  Sum_probs=16.1

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCC-EEEEEEE
Q ss_conf             599489998096569999999997498-3999997
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFD-RVETLSF   40 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~-~v~~i~~   40 (240)
                      +.+++++.=.|++=. ..+.+++..|. +|+.+..
T Consensus       176 ~g~~VlV~GaG~iGl-~a~~~ak~~Ga~~Vi~~d~  209 (358)
T TIGR03451       176 RGDSVAVIGCGGVGD-AAIAGAALAGASKIIAVDI  209 (358)
T ss_pred             CCCEEEEECCCHHHH-HHHHHHHHCCCCEEEEEEC
T ss_conf             998899967376999-9999999839918999919


No 182
>KOG1313 consensus
Probab=21.81  E-value=34  Score=14.04  Aligned_cols=15  Identities=27%  Similarity=0.691  Sum_probs=7.4

Q ss_pred             CCCCCCCCCHHHHHH
Q ss_conf             668899868778999
Q gi|254781031|r  213 EWGYGCNSCPACYLR  227 (240)
Q Consensus       213 ~~~~hCG~C~~C~~R  227 (240)
                      ..+.||-.|..|++|
T Consensus       114 prTHHCsiC~kCVL~  128 (309)
T KOG1313         114 PRTHHCSICNKCVLK  128 (309)
T ss_pred             CCCCHHHHHHHHHHC
T ss_conf             975310277667544


No 183
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX,  which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=21.79  E-value=50  Score=12.98  Aligned_cols=31  Identities=10%  Similarity=0.087  Sum_probs=19.1

Q ss_pred             CEEEEEECCHH----------HHHHHHHHHHCCCEEEEEEE
Q ss_conf             48999809656----------99999999974983999997
Q gi|254781031|r   10 SALLLFSGGQD----------SSTCLSWALDRFDRVETLSF   40 (240)
Q Consensus        10 ~av~l~SGGlD----------S~~~l~~l~~~~~~v~~i~~   40 (240)
                      .++++|.||++          =.-.+..|.+++.....++.
T Consensus         1 daIvVLG~~~~~~~~~~~~~~R~~~a~~L~~~~~~~~ii~s   41 (150)
T cd06259           1 DAIVVLGGGVNGDGPSPILAERLDAAAELYRAGPAPKLIVS   41 (150)
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             98998999879999897999999999999981999889995


No 184
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit; InterPro: IPR014307   Members of this protein are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalisation among xanthine dehydrogenases in eukaryotes. ; GO: 0004854 xanthine dehydrogenase activity, 0004855 xanthine oxidase activity, 0050660 FAD binding.
Probab=21.73  E-value=32  Score=14.20  Aligned_cols=15  Identities=7%  Similarity=0.058  Sum_probs=6.8

Q ss_pred             EEEEEEECCCCHHHH
Q ss_conf             167753138988999
Q gi|254781031|r  166 VTVHTPLMWLKKYET  180 (240)
Q Consensus       166 ~~i~~P~~~~tK~eI  180 (240)
                      +.++..|+.+-|.++
T Consensus       375 lpLEdfFi~Y~k~~~  389 (515)
T TIGR02963       375 LPLEDFFIDYGKQDR  389 (515)
T ss_pred             CHHHHHHHHHHHEEC
T ss_conf             117777467202010


No 185
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.70  E-value=41  Score=13.55  Aligned_cols=17  Identities=24%  Similarity=0.489  Sum_probs=12.7

Q ss_pred             CCCCCCCCC--CHHHHHHH
Q ss_conf             566889986--87789999
Q gi|254781031|r  212 YEWGYGCNS--CPACYLRQ  228 (240)
Q Consensus       212 ~~~~~hCG~--C~~C~~R~  228 (240)
                      ...-++||.  |++|+.=-
T Consensus       227 ~ps~t~CgHlFC~~Cl~~~  245 (271)
T COG5574         227 VPSCTPCGHLFCLSCLLIS  245 (271)
T ss_pred             CCCCCCCCCHHHHHHHHHH
T ss_conf             7310466313669888778


No 186
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=21.59  E-value=32  Score=14.20  Aligned_cols=28  Identities=11%  Similarity=-0.005  Sum_probs=11.5

Q ss_pred             EEEEEECCHHHHHHHHHHHHCCC-EEEEE
Q ss_conf             89998096569999999997498-39999
Q gi|254781031|r   11 ALLLFSGGQDSSTCLSWALDRFD-RVETL   38 (240)
Q Consensus        11 av~l~SGGlDS~~~l~~l~~~~~-~v~~i   38 (240)
                      .|+.+=-|.==+..+.++.-.|. +|+.+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~  199 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVV  199 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             89998888999999999987698279997


No 187
>PTZ00038 ferredoxin; Provisional
Probab=21.46  E-value=51  Score=12.94  Aligned_cols=41  Identities=27%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             CCEEEEEEECCC-----CHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             321677531389-----88999999998282000143255372162888655556688998687
Q gi|254781031|r  164 SHVTVHTPLMWL-----KKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCP  222 (240)
Q Consensus       164 ~~~~i~~P~~~~-----tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~~~~~~~~~hCG~C~  222 (240)
                      ..|++.+|--..     .-.-|+..+++-|    +++|    +||..|          .||.|.
T Consensus        77 y~v~l~tp~g~~~ieC~eDE~ILDAAer~G----I~LP----ySCR~G----------~CgTCk  122 (172)
T PTZ00038         77 YNVKLRTPEGEKVIECDEDEYILEAAERQG----VELP----YSCRGG----------SCSTCA  122 (172)
T ss_pred             EEEEEECCCCCEEEECCCCCHHHHHHHHCC----CCCC----CCCCCC----------CCCCCE
T ss_conf             999998899977686899865999999849----9877----777786----------188881


No 188
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=21.39  E-value=42  Score=13.47  Aligned_cols=32  Identities=6%  Similarity=-0.098  Sum_probs=15.5

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHCCC-EEEEEEE
Q ss_conf             99489998096569999999997498-3999997
Q gi|254781031|r    8 APSALLLFSGGQDSSTCLSWALDRFD-RVETLSF   40 (240)
Q Consensus         8 ~~~av~l~SGGlDS~~~l~~l~~~~~-~v~~i~~   40 (240)
                      .+++++.=.|++= ...+..++..|. +|+.+-.
T Consensus       170 g~~VlV~G~G~iG-l~~~~~ak~~Ga~~Vi~~d~  202 (343)
T PRK09880        170 GKRVFISGVGPIG-CLIVSAVKTLGAAEIVCADL  202 (343)
T ss_pred             CCEEEEECCCHHH-HHHHHHHHHCCCCEEEEEEC
T ss_conf             9889998477679-99999999869987999979


No 189
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=21.38  E-value=51  Score=12.93  Aligned_cols=14  Identities=14%  Similarity=0.197  Sum_probs=5.3

Q ss_pred             ECCHHHHHHHHHHH
Q ss_conf             09656999999999
Q gi|254781031|r   16 SGGQDSSTCLSWAL   29 (240)
Q Consensus        16 SGGlDS~~~l~~l~   29 (240)
                      ..|.|..-.+-.|+
T Consensus       273 ~~G~d~~~~~~dl~  286 (563)
T PRK06674        273 GQGKDPVRLMEDFI  286 (563)
T ss_pred             HCCCCHHHHHHHHH
T ss_conf             87999999999999


No 190
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=21.16  E-value=52  Score=12.90  Aligned_cols=27  Identities=19%  Similarity=0.107  Sum_probs=21.9

Q ss_pred             HCCCCCEEEEEECCHHHHHHHHHHHHC
Q ss_conf             135994899980965699999999974
Q gi|254781031|r    5 IKKAPSALLLFSGGQDSSTCLSWALDR   31 (240)
Q Consensus         5 ~~~~~~av~l~SGGlDS~~~l~~l~~~   31 (240)
                      -...+.-|+|.=||+=|++++++|.+-
T Consensus         2 ~~~~~~DVvLIGaGIMsaTL~~lL~el   28 (497)
T PRK13339          2 AKSESKDVVLVGAGILSTTFGVLLKEL   28 (497)
T ss_pred             CCCCCCCEEEECCHHHHHHHHHHHHHC
T ss_conf             977777889989528899999999976


No 191
>PTZ00019 fructose-bisphosphate aldolase; Provisional
Probab=20.90  E-value=53  Score=12.87  Aligned_cols=11  Identities=9%  Similarity=-0.272  Sum_probs=7.1

Q ss_pred             CCCCHHHCCCC
Q ss_conf             14325537216
Q gi|254781031|r  193 VNLILEESHTC  203 (240)
Q Consensus       193 ~~~~~~~T~SC  203 (240)
                      ...|+.+|+|=
T Consensus       285 ~~~PW~LSFSY  295 (356)
T PTZ00019        285 GPHPWALSFSY  295 (356)
T ss_pred             CCCCCEEEEEH
T ss_conf             99996487635


No 192
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=20.83  E-value=53  Score=12.86  Aligned_cols=39  Identities=18%  Similarity=0.093  Sum_probs=29.2

Q ss_pred             HHHC-CCCCEEEEEECCH--HHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             2213-5994899980965--6999999999749839999976
Q gi|254781031|r    3 DIIK-KAPSALLLFSGGQ--DSSTCLSWALDRFDRVETLSFD   41 (240)
Q Consensus         3 ~~~~-~~~~av~l~SGGl--DS~~~l~~l~~~~~~v~~i~~~   41 (240)
                      ++++ .++-||+-+|.-.  +|-.++-.|.+.||+|+||-=.
T Consensus        11 ~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~   52 (140)
T COG1832          11 EILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPK   52 (140)
T ss_pred             HHHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCC
T ss_conf             999857669999457999861889999999789989955855


No 193
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=20.43  E-value=54  Score=12.80  Aligned_cols=18  Identities=22%  Similarity=0.338  Sum_probs=9.7

Q ss_pred             EEEEC--CHHHHHHHHHHHH
Q ss_conf             99809--6569999999997
Q gi|254781031|r   13 LLFSG--GQDSSTCLSWALD   30 (240)
Q Consensus        13 ~l~SG--GlDS~~~l~~l~~   30 (240)
                      .||||  |.=-+++|..+.+
T Consensus        41 yLFsGprG~GKTt~ArilAk   60 (560)
T PRK06647         41 YIFSGPRGVGKTSSARAFAR   60 (560)
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             66328998789999999999


No 194
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=20.26  E-value=51  Score=12.96  Aligned_cols=20  Identities=25%  Similarity=0.287  Sum_probs=15.4

Q ss_pred             CCHHHCCCCCEEEEEECCHHH
Q ss_conf             912213599489998096569
Q gi|254781031|r    1 MNDIIKKAPSALLLFSGGQDS   21 (240)
Q Consensus         1 ~~~~~~~~~~av~l~SGGlDS   21 (240)
                      |.+|-|+-+||| .+-+|+=+
T Consensus         1 ~~~m~kki~KaV-I~AAG~GT   20 (302)
T PRK13389          1 MAAINTKVKKAV-IPVAGLGT   20 (302)
T ss_pred             CCCCCCCCCEEE-EECCCCCC
T ss_conf             964357756799-98986753


No 195
>KOG1615 consensus
Probab=20.24  E-value=54  Score=12.78  Aligned_cols=12  Identities=25%  Similarity=0.050  Sum_probs=6.4

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             988999999998
Q gi|254781031|r  175 LKKYETWKLAQD  186 (240)
Q Consensus       175 ~tK~eI~~~~~~  186 (240)
                      .-|.++++.-.+
T Consensus       158 ggKa~~i~~lrk  169 (227)
T KOG1615         158 GGKAEVIALLRK  169 (227)
T ss_pred             CCCHHHHHHHHH
T ss_conf             861899999980


No 196
>pfam04885 Stig1 Stigma-specific protein, Stig1. This family represents the Stig1 cysteine rich plant protein. The STIG1 gene is developmentally regulated and expressed specifically in the stigmatic secretory zone.
Probab=20.15  E-value=40  Score=13.57  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=10.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             72162888655556688998687
Q gi|254781031|r  200 SHTCYLGKRDKRYEWGYGCNSCP  222 (240)
Q Consensus       200 T~SC~~~~~~~~~~~~~hCG~C~  222 (240)
                      +++|=.+.=........|||.|.
T Consensus        97 ~~~CC~G~Cvd~~sd~~hCG~Cg  119 (136)
T pfam04885        97 GQTCCGGQCVDLNSDRRNCGKCN  119 (136)
T ss_pred             CCCCCCCEEECCCCCCCHHCCCC
T ss_conf             66056888377777810121244


No 197
>KOG2164 consensus
Probab=20.05  E-value=55  Score=12.75  Aligned_cols=16  Identities=25%  Similarity=0.760  Sum_probs=12.1

Q ss_pred             CCCC--CHHHHHHHHHHH
Q ss_conf             9986--877899999999
Q gi|254781031|r  217 GCNS--CPACYLRQKGWM  232 (240)
Q Consensus       217 hCG~--C~~C~~R~~af~  232 (240)
                      -||.  |++|+++=|-.-
T Consensus       203 ~CGHiFC~~CiLqy~~~s  220 (513)
T KOG2164         203 NCGHIFCGPCILQYWNYS  220 (513)
T ss_pred             CCCCEEEHHHHHHHHHHH
T ss_conf             667331068999998553


No 198
>pfam02008 zf-CXXC CXXC zinc finger domain. This domain contains eight conserved cysteine residues that bind to two zinc ions. The CXXC domain is found in a variety of chromatin-associated proteins. This domain binds to nonmethyl-CpG dinucleotides. The domain is characterized by two CGXCXXC repeats. The RecQ helicase has a single repeat that also binds to zinc, but this has not been included in this family. The DNA binding interface has been identified by NMR.
Probab=20.01  E-value=26  Score=14.75  Aligned_cols=12  Identities=25%  Similarity=0.711  Sum_probs=9.6

Q ss_pred             CCCCCHHHHHHH
Q ss_conf             998687789999
Q gi|254781031|r  217 GCNSCPACYLRQ  228 (240)
Q Consensus       217 hCG~C~~C~~R~  228 (240)
                      -||.|..|+++.
T Consensus        20 dCG~C~~C~d~~   31 (48)
T pfam02008        20 DCGQCSFCRDMP   31 (48)
T ss_pred             CCCCCHHHHCCC
T ss_conf             787772020767


Done!