HHsearch results for GI: 254781031 and protein with PDBid: 2c5s_A
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.70 E-value=3.9e-16 Score=117.76 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=101.0
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCEEEECHHHCC
Q ss_conf 59948999809656999999999749839999976778877727999999999999988875203--5615875011032
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSL--GEDHILPLAILGD 84 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 84 (240)
..+|+|+++|||+||+++||+++++|.++.+++|++++... +.+ ...+ .+......... .....++......
T Consensus 186 s~gKvlvllSGGiDS~Vaa~ll~k~G~~v~~v~~~~~~~~~-~~~--~e~v---~~la~~l~~~~~~i~~~~~~~~~~~~ 259 (413)
T 2c5s_A 186 VGGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPPFTS-ERA--KQKV---IDLAQELTKYCKRVTLHLVPFTEVQK 259 (413)
T ss_dssp TTEEEEEECCSSSHHHHHHHHHHHBTEEEEEEEEECTTTSC-HHH--HHHH---HHHHHHHGGGSSCEEEEEEECHHHHH
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCC-HHH--HHHH---HHHHHHCCCCCEEEEEEEEHHHHHHH
T ss_conf 77838999966960899999999828863689975699899-789--9999---99999818972112446622778888
Q ss_pred CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 24443322201100012331011111112233377777743399365114544443455544302477777677530643
Q gi|254781031|r 85 ISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMES 164 (240)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (240)
... ..............++...+..+|...|+..+.+|.+.+|..... .. ++.......
T Consensus 260 --------~~~----~~~~~~~~~~~~rr~~~~~a~~~A~~~g~~~I~tG~~~~d~~sq~---l~------nl~~~~~~~ 318 (413)
T 2c5s_A 260 --------TIN----KEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQT---LD------SMHTINEVT 318 (413)
T ss_dssp --------HHH----HHSCGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCC---HH------HHHHHGGGC
T ss_pred --------HHH----HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHH---HH------HHHHCCCCC
T ss_conf --------777----544688832268999999999999855788999877268660267---88------876514222
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCHHCCCC
Q ss_conf 21677531389889999999982820001432
Q gi|254781031|r 165 HVTVHTPLMWLKKYETWKLAQDIGGQDLVNLI 196 (240)
Q Consensus 165 ~~~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~ 196 (240)
...+++|+++++|.||++.++++|.++....+
T Consensus 319 ~~~iiRPL~~~dK~EI~~~Ak~iGl~~is~~p 350 (413)
T 2c5s_A 319 NYPVIRPLITMDKLEIIKIAEEIGTYDISIRP 350 (413)
T ss_dssp CSCEECTTTTCCHHHHHHHHHHTTCHHHHTSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCHHHCC
T ss_conf 67641400169999999999984991232289