HHsearch results for GI: 254781031 and protein with PDBid: 3a2k_A
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=99.24 E-value=2.5e-11 Score=87.94 Aligned_cols=173 Identities=12% Similarity=0.024 Sum_probs=93.4
Q ss_pred CHHHCCCCCEEEEEECCHHHHHHHHHHHH----CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 12213599489998096569999999997----49839999976778877727999999999999988875203561587
Q gi|254781031|r 2 NDIIKKAPSALLLFSGGQDSSTCLSWALD----RFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHIL 77 (240)
Q Consensus 2 ~~~~~~~~~av~l~SGGlDS~~~l~~l~~----~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (240)
+.|+++..+.+|.+|||.||+++|+.|.. .+.+++++|+|+|.+.. +.+.....+ ...+... ..+.+..
T Consensus 12 ~~l~~~~~~v~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~hvnh~lr~~-~s~~~~~~~---~~~~~~~---~i~~~~~ 84 (464)
T 3a2k_A 12 HQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGR-ESEEEMEFV---KRFCVER---RILCETA 84 (464)
T ss_dssp TCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTH-HHHHHHHHH---HHHHHHT---TCEEEEE
T ss_pred CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC-CHHHHHHHH---HHHHHHC---CCEEEEE
T ss_conf 38999839899998071999999999999889729859999977989986-669999999---9999984---9919999
Q ss_pred ECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHH-HH
Q ss_conf 50110322444332220110001233101111111223337777774339936511454444345554430247777-76
Q gi|254781031|r 78 PLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAI-ET 156 (240)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~ 156 (240)
.... .... ..............|. ......+...+++.+++|.+.+|..- .++..+ ..
T Consensus 85 ~~~~-~~~~----------~~~~~~~e~~aR~~Ry----~~~~~~~~~~~~~~i~~aHh~dD~~E------T~l~~l~rg 143 (464)
T 3a2k_A 85 QIDV-PAFQ----------RSAGLGAQEAARICRY----RFFAELMEKHQAGYVAVGHHGDDQVE------TILMRLVRG 143 (464)
T ss_dssp ECCC-HHHH----------TTTTCCSHHHHHHHHH----HHHHHHHHTTTCCEEECCCCHHHHHH------HHHHHHHHC
T ss_pred EEEE-EHHH----------CCCCCCHHHHHHHHHH----HHHHCCCCCCCCCEEEEEEECCCHHH------HHHHHHHHH
T ss_conf 9860-0110----------2589898999999998----76412333456315875420475899------999875431
Q ss_pred --------HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCC
Q ss_conf --------7753064321677531389889999999982820001432553721628886
Q gi|254781031|r 157 --------AINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKR 208 (240)
Q Consensus 157 --------~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~ 208 (240)
+..........+++|++..+|.||...+...+..... --||..+..
T Consensus 144 ~~~~gl~~~~~~~~~~~~~~iRPll~~~k~ei~~y~~~~~l~~~~------D~sN~~~~~ 197 (464)
T 3a2k_A 144 STSKGYAGIPVKRPFHGGYLIRPFLAVSRAEIEAYCRQMGLSPRC------DPSNEKDDY 197 (464)
T ss_dssp CCSSSTTCSCSEEECSSSEEECGGGGSCHHHHHHHHHHTCCSSCS------CTTCCCTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCC
T ss_conf 001233455321333456577899975799999999984898666------899767702