Query gi|254781031|ref|YP_003065444.1| exsB protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 240
No_of_seqs 113 out of 2303
Neff 10.1
Searched_HMMs 23785
Date Tue May 31 23:56:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781031.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pg3_A Queuosine biosynthesis 100.0 4.7E-43 0 284.7 13.6 211 9-237 3-217 (232)
2 3bl5_A Queuosine biosynthesis 100.0 3.8E-41 1.4E-45 272.9 17.4 209 8-235 3-212 (219)
3 2c5s_A THII, probable thiamine 99.7 3.9E-16 1.6E-20 117.8 14.0 163 7-196 186-350 (413)
4 2der_A TRNA-specific 2-thiouri 99.5 1.2E-13 5E-18 102.3 11.0 177 3-190 12-200 (380)
5 2hma_A Probable tRNA (5-methyl 99.5 9.8E-13 4.1E-17 96.7 12.0 172 7-190 8-192 (376)
6 2nz2_A Argininosuccinate synth 99.3 1.7E-11 7.2E-16 88.9 11.6 164 4-190 1-171 (413)
7 1vl2_A Argininosuccinate synth 99.3 2.7E-11 1.2E-15 87.7 11.6 166 2-190 8-180 (421)
8 3k32_A Uncharacterized protein 99.3 4.2E-11 1.7E-15 86.6 12.3 152 3-187 2-153 (203)
9 2dpl_A GMP synthetase, GMP syn 99.3 9.5E-11 4E-15 84.3 13.0 160 7-191 19-180 (308)
10 1vbk_A Hypothetical protein PH 99.3 1.6E-11 6.6E-16 89.2 8.1 127 7-188 178-306 (307)
11 3a2k_A TRNA(Ile)-lysidine synt 99.2 2.5E-11 1.1E-15 87.9 8.3 173 2-208 12-197 (464)
12 1k92_A Argininosuccinate synth 99.2 1.3E-10 5.3E-15 83.6 11.1 163 5-190 7-181 (455)
13 1wy5_A TILS, hypothetical UPF0 99.2 5.9E-11 2.5E-15 85.6 9.0 160 3-191 19-188 (317)
14 1ni5_A Putative cell cycle pro 99.2 1.2E-10 4.8E-15 83.8 9.3 158 2-193 7-177 (433)
15 1kor_A Argininosuccinate synth 99.1 1.7E-09 7.3E-14 76.5 13.1 156 10-190 2-163 (400)
16 2vxo_A GMP synthase [glutamine 99.0 1.1E-08 4.6E-13 71.6 11.9 176 7-192 239-435 (697)
17 1xng_A NH(3)-dependent NAD(+) 98.9 3.3E-09 1.4E-13 74.8 7.8 150 8-191 25-175 (268)
18 3fiu_A NH(3)-dependent NAD(+) 98.9 4E-09 1.7E-13 74.3 7.9 38 8-45 29-66 (249)
19 1gpm_A GMP synthetase, XMP ami 98.9 1.4E-08 5.9E-13 70.9 9.7 164 7-192 226-396 (525)
20 3p52_A NH(3)-dependent NAD(+) 98.9 1.2E-08 5.1E-13 71.3 8.9 151 7-191 25-176 (249)
21 2ywb_A GMP synthase [glutamine 98.8 5E-08 2.1E-12 67.5 11.4 164 7-193 208-375 (503)
22 2e18_A NH(3)-dependent NAD(+) 98.7 5.3E-08 2.2E-12 67.3 8.0 149 8-191 22-172 (257)
23 3dpi_A NAD+ synthetase; ssgcid 98.5 1E-07 4.2E-12 65.6 5.5 36 7-42 45-87 (285)
24 2o8v_A Phosphoadenosine phosph 98.5 1.5E-06 6.3E-11 58.3 11.1 156 7-190 44-200 (252)
25 1wxi_A NH(3)-dependent NAD(+) 98.3 4.8E-06 2E-10 55.2 9.8 38 8-45 40-88 (275)
26 1zun_A Sulfate adenylyltransfe 98.3 1.3E-06 5.6E-11 58.6 6.6 46 2-47 40-89 (325)
27 1kqp_A NAD+ synthase;, NH(3)-d 98.3 6.9E-06 2.9E-10 54.2 9.8 155 7-191 37-200 (271)
28 1sur_A PAPS reductase; assimil 98.2 1.7E-05 7.1E-10 51.8 10.3 153 8-189 44-198 (215)
29 2oq2_A Phosphoadenosine phosph 97.9 7.1E-05 3E-09 47.9 8.4 164 5-190 38-205 (261)
30 3fwk_A FMN adenylyltransferase 97.6 0.00011 4.7E-09 46.7 6.4 56 127-190 160-215 (308)
31 1jgt_A Beta-lactam synthetase; 97.6 0.00012 5E-09 46.5 5.8 51 7-59 240-290 (513)
32 1q15_A CARA; CMPR, (2S,5S)-5-c 97.6 0.00017 7.2E-09 45.6 6.6 50 7-58 237-286 (503)
33 2wsi_A FAD synthetase; transfe 97.5 0.00097 4.1E-08 40.9 10.1 55 127-189 157-211 (306)
34 2goy_A Adenosine phosphosulfat 97.5 0.0003 1.3E-08 44.0 7.2 39 8-47 54-92 (275)
35 3n05_A NH(3)-dependent NAD(+) 97.4 0.00052 2.2E-08 42.6 7.4 36 8-43 326-363 (590)
36 2d13_A Hypothetical protein PH 97.3 0.00028 1.2E-08 44.2 5.2 130 9-189 5-140 (227)
37 1ct9_A Asparagine synthetase B 97.0 0.0011 4.8E-08 40.5 5.4 25 8-32 226-250 (553)
38 3dla_A Glutamine-dependent NAD 97.0 0.0025 1.1E-07 38.3 7.1 50 8-57 361-417 (680)
39 3ilv_A Glutamine-dependent NAD 95.1 0.036 1.5E-06 31.2 5.5 23 7-29 302-324 (634)
40 1ryi_A Glycine oxidase; flavop 63.8 6.1 0.00026 17.3 5.0 38 1-38 8-46 (382)
41 1c0p_A D-amino acid oxidase; a 63.1 6.3 0.00026 17.2 4.8 35 4-39 2-36 (363)
42 2fsx_A RV0390, COG0607: rhodan 50.5 10 0.00043 15.9 3.9 15 174-188 90-104 (148)
43 3da8_A Probable 5'-phosphoribo 48.3 11 0.00047 15.7 3.4 38 3-41 7-47 (215)
44 1vl1_A 6PGL, 6-phosphogluconol 46.2 7.9 0.00033 16.6 1.8 40 2-42 38-81 (232)
45 2gag_B Heterotetrameric sarcos 43.0 13 0.00056 15.2 3.6 38 1-38 1-52 (405)
46 3lwd_A 6-phosphogluconolactona 42.6 14 0.00057 15.2 3.5 40 2-42 26-69 (226)
47 2hy5_B Intracellular sulfur ox 41.9 13 0.00053 15.4 2.3 37 1-40 1-44 (136)
48 1vdc_A NTR, NADPH dependent th 40.6 15 0.00061 15.0 2.8 38 1-39 1-38 (333)
49 3i6d_A Protoporphyrinogen oxid 40.2 15 0.00062 14.9 4.3 34 5-38 1-40 (470)
50 3i9v_1 NADH-quinone oxidoreduc 34.4 9.7 0.00041 16.1 0.8 11 217-227 352-362 (438)
51 3nwp_A 6-phosphogluconolactona 33.6 18 0.00077 14.4 2.1 39 3-42 31-73 (233)
52 1rm6_C 4-hydroxybenzoyl-COA re 31.1 14 0.00059 15.1 1.2 12 215-226 97-108 (161)
53 1n62_A Carbon monoxide dehydro 31.1 14 0.00059 15.1 1.2 12 215-226 99-110 (166)
54 2p0y_A Hypothetical protein LP 30.8 21 0.00088 14.0 5.0 34 5-38 6-39 (341)
55 2w3s_A Xanthine dehydrogenase; 30.0 15 0.00065 14.8 1.2 21 3-24 191-211 (462)
56 1t3q_A Quinoline 2-oxidoreduct 28.2 18 0.00074 14.5 1.3 12 215-226 104-115 (168)
57 3hrd_D Nicotinate dehydrogenas 28.0 17 0.00072 14.5 1.2 10 216-225 99-108 (160)
58 3nrz_A Xanthine dehydrogenase/ 27.9 17 0.00071 14.6 1.1 13 214-226 108-120 (164)
59 1f0k_A MURG, UDP-N-acetylgluco 26.5 25 0.001 13.5 4.5 37 4-40 1-42 (364)
60 2ivd_A PPO, PPOX, protoporphyr 25.4 26 0.0011 13.4 4.1 35 4-38 11-45 (478)
61 3eb9_A 6-phosphogluconolactona 25.4 26 0.0011 13.4 2.7 40 2-42 29-76 (266)
62 2j2s_A Zinc finger protein HRX 24.2 15 0.00062 14.9 0.3 12 217-228 24-35 (72)
63 1p3y_1 MRSD protein; flavoprot 22.9 29 0.0012 13.1 3.6 36 5-40 5-43 (194)
64 3l0a_A Putative exonuclease; R 22.6 26 0.0011 13.4 1.3 15 215-229 238-252 (266)
65 3l3b_A ES1 family protein; ssg 22.4 30 0.0012 13.1 4.8 36 10-45 25-68 (242)
66 3gr6_A Enoyl-[acyl-carrier-pro 20.3 33 0.0014 12.8 3.8 38 1-40 2-44 (260)
No 1
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=100.00 E-value=4.7e-43 Score=284.67 Aligned_cols=211 Identities=42% Similarity=0.830 Sum_probs=161.0
Q ss_pred CCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCC
Q ss_conf 94899980965699999999974983999997677887772799999999999998887520356158750110322444
Q gi|254781031|r 9 PSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHS 88 (240)
Q Consensus 9 ~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (240)
||||+||||||||+++|++++++|++|++|||||||+|..+.+.+....++.. ...........+......
T Consensus 3 kk~VvL~SGGlDS~v~a~~l~~~g~~v~~l~~~yGq~~~~e~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 73 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDYDDVHCITFDYGQRHRAEIEVAQELSQKLG---------AAAHKVLDVGLLNELATS 73 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHCSEEEEEEEESSSSCHHHHHHHHHHHHHHT---------CSEEEEEECTHHHHTSHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHH---------CCCCCCCCHHHHHHCCCC
T ss_conf 86999836808999999999976996999999799832999999998665431---------012101204555413565
Q ss_pred CCC----CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 332----2201100012331011111112233377777743399365114544443455544302477777677530643
Q gi|254781031|r 89 SLT----KNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMES 164 (240)
Q Consensus 89 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (240)
... ...............+++.++..++..+..++...++..+..|...++...++++++.|.+.+++++....+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~a~~~~~~~~~~G~~~~d~~~~~d~~~~f~~~~~~~~~~~~~~ 153 (232)
T 2pg3_A 74 SLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSGYPDCRDEFVKALNQAIVLGIAR 153 (232)
T ss_dssp HHHHTTCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSSCCGGGSHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 43344444432110023665235301308878999999998399753124446666677764486999999999855777
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2167753138988999999998282000143255372162888655556688998687789999999973064
Q gi|254781031|r 165 HVTVHTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQKGWMEFKEK 237 (240)
Q Consensus 165 ~~~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~~~~~~~~~hCG~C~~C~~R~~af~~~~~~ 237 (240)
+++|++||+++||+||++++.+.+ .+++++..|||||+|.. ..|||+|.+|++||+||.++|..
T Consensus 154 ~~~i~~P~~~~tK~Ei~~~~~~~~---~l~~~~~~T~SC~~~~~------~~~CG~C~~C~~Rr~af~~~~~~ 217 (232)
T 2pg3_A 154 DIRFETPLMWLNKAETWALADYYQ---QLDTVRYHTLTCYNGIK------GDGCGQCAACHLRANGLAQYQKD 217 (232)
T ss_dssp CCEEECTTTTCCHHHHHHHHHHTT---CHHHHHHHCCCCTTSCC------TTTTSCSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCCCC------CCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 726995022588899999854312---35854312277789799------99798897799999999985799
No 2
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=100.00 E-value=3.8e-41 Score=272.88 Aligned_cols=209 Identities=45% Similarity=0.937 Sum_probs=163.5
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCC-C
Q ss_conf 994899980965699999999974983999997677887772799999999999998887520356158750110322-4
Q gi|254781031|r 8 APSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDI-S 86 (240)
Q Consensus 8 ~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 86 (240)
++|||+|||||+||+++||+|+++|++|++|||||||+|..+...+....+. .....+.......... .
T Consensus 3 k~k~vvl~SGGlDS~~~a~~l~~~g~~v~~l~~~ygq~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 72 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKEFEEVETVTFHYNQRHSQEVEVAKSIAEK----------LGVKNHLLDMSLLNQLAP 72 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHCSEEEEEEEESSCTTCHHHHHHHHHHHT----------TCCCEEEEECGGGGGGST
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHH----------HHHHCCCCHHHHHHHHCC
T ss_conf 7739999588188999999999879969999998886421045778999998----------520001110334444202
Q ss_pred CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 44332220110001233101111111223337777774339936511454444345554430247777767753064321
Q gi|254781031|r 87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHV 166 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (240)
....................+++.++..++.++..++...++..+.++....+...++++++.|.+.++++...+....+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 152 (219)
T 3bl5_A 73 NALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDFSGYPDCRDEFVKSCNVTVNLAMEKPF 152 (219)
T ss_dssp GGGC--------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC----CCGGGSHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 42111203544301455534786103677789999988603441574225666557899837899999999974445503
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 677531389889999999982820001432553721628886555566889986877899999999730
Q gi|254781031|r 167 TVHTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQKGWMEFK 235 (240)
Q Consensus 167 ~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~~~~~~~~~hCG~C~~C~~R~~af~~~~ 235 (240)
++++||+++||.||++.+.+++. ++.+++.|||||+|.. ..|||+|++|++||+||.|+=
T Consensus 153 ~~~~P~~~~~K~eii~~~~~~~~---~~~~~~~T~SC~~~~~------~~~CG~C~~C~~R~~af~e~~ 212 (219)
T 3bl5_A 153 VIHTPLMWLNKAETWKLADELGA---LDFVKNNTLTCYNGII------ADGCGECPACHLRSKGYEEYM 212 (219)
T ss_dssp EEECTTTTCCHHHHHHHHHHTTC---HHHHHHHCCCSTTSCC------SSCCSCSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHCCC---CCCCCCCCCCCCCCCC------CCCCCCCHHHHHHHHHHHHHH
T ss_conf 89724003729999999998289---5501200773689899------998977860898999999999
No 3
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.70 E-value=3.9e-16 Score=117.76 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=101.0
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCEEEECHHHCC
Q ss_conf 59948999809656999999999749839999976778877727999999999999988875203--5615875011032
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSL--GEDHILPLAILGD 84 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 84 (240)
..+|+|+++|||+||+++||+++++|.++.+++|++++... +.+ ...+ .+......... .....++......
T Consensus 186 s~gKvlvllSGGiDS~Vaa~ll~k~G~~v~~v~~~~~~~~~-~~~--~e~v---~~la~~l~~~~~~i~~~~~~~~~~~~ 259 (413)
T 2c5s_A 186 VGGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPPFTS-ERA--KQKV---IDLAQELTKYCKRVTLHLVPFTEVQK 259 (413)
T ss_dssp TTEEEEEECCSSSHHHHHHHHHHHBTEEEEEEEEECTTTSC-HHH--HHHH---HHHHHHHGGGSSCEEEEEEECHHHHH
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCC-HHH--HHHH---HHHHHHCCCCCEEEEEEEEHHHHHHH
T ss_conf 77838999966960899999999828863689975699899-789--9999---99999818972112446622778888
Q ss_pred CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 24443322201100012331011111112233377777743399365114544443455544302477777677530643
Q gi|254781031|r 85 ISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMES 164 (240)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (240)
... ..............++...+..+|...|+..+.+|.+.+|..... .. ++.......
T Consensus 260 --------~~~----~~~~~~~~~~~~rr~~~~~a~~~A~~~g~~~I~tG~~~~d~~sq~---l~------nl~~~~~~~ 318 (413)
T 2c5s_A 260 --------TIN----KEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQT---LD------SMHTINEVT 318 (413)
T ss_dssp --------HHH----HHSCGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCC---HH------HHHHHGGGC
T ss_pred --------HHH----HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHH---HH------HHHHCCCCC
T ss_conf --------777----544688832268999999999999855788999877268660267---88------876514222
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCHHCCCC
Q ss_conf 21677531389889999999982820001432
Q gi|254781031|r 165 HVTVHTPLMWLKKYETWKLAQDIGGQDLVNLI 196 (240)
Q Consensus 165 ~~~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~ 196 (240)
...+++|+++++|.||++.++++|.++....+
T Consensus 319 ~~~iiRPL~~~dK~EI~~~Ak~iGl~~is~~p 350 (413)
T 2c5s_A 319 NYPVIRPLITMDKLEIIKIAEEIGTYDISIRP 350 (413)
T ss_dssp CSCEECTTTTCCHHHHHHHHHHTTCHHHHTSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCHHHCC
T ss_conf 67641400169999999999984991232289
No 4
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.52 E-value=1.2e-13 Score=102.34 Aligned_cols=177 Identities=19% Similarity=0.079 Sum_probs=103.6
Q ss_pred HHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH
Q ss_conf 22135994899980965699999999974983999997677887772799999999999998887520356158750110
Q gi|254781031|r 3 DIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAIL 82 (240)
Q Consensus 3 ~~~~~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (240)
.|+++.||++|.+|||+||++.|++|+++|++|+++|+..+..... .......+.+.+..........++++++....
T Consensus 12 ~m~~~~kkV~V~mSGGVDSsvaa~lL~~qG~~V~gv~m~~~~~~~~--~~~c~~~~d~~~a~~va~~LgIp~~~~d~~~~ 89 (380)
T 2der_A 12 SMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG--EEYCTAAADLADAQAVCDKLGIELHTVNFAAE 89 (380)
T ss_dssp -----CCEEEEECCSCSTTHHHHHHHHTTCCEEEEEEEECCCCCSH--HHHHHHHHHHHHHHHHHHHHTCCEEEEECHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCC--CCCCCCHHHHHHHHHHHHHCCCCEEEECHHHH
T ss_conf 5776688799987786999999999997799689999988768876--67888467899999999984997799450897
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC------------CCCCCCHHH
Q ss_conf 32244433222011000123310111111122333777777433993651145444434------------555443024
Q gi|254781031|r 83 GDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYS------------GYPDCRHDT 150 (240)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~------------~~~~~~~~~ 150 (240)
.. ......-.........+.-.....+...+-....-.+...|++.+++|..+.... ...|.+.+
T Consensus 90 f~--~~V~~~f~~~y~~G~TPNPcv~CN~~iKf~~ll~~a~~~~g~d~iATGHYAr~~~~~~~~~L~r~~D~~KDQSYf- 166 (380)
T 2der_A 90 YW--DNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYF- 166 (380)
T ss_dssp HH--HHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTTTCCGGG-
T ss_pred HH--HHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCEEECCEEEEEECCCCCEEEEECCCCCCCCEEE-
T ss_conf 62--224577799987589998540113332289999999986699856000379997589957788527777784467-
Q ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 7777767753064321677531389889999999982820
Q gi|254781031|r 151 IRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQ 190 (240)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~ 190 (240)
+.......--++..|+-.++|.||.+++.+++..
T Consensus 167 ------L~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~ 200 (380)
T 2der_A 167 ------LYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLV 200 (380)
T ss_dssp ------GSSCCHHHHHHEECCGGGSCHHHHHHHHHHTTCC
T ss_pred ------EEEECHHHHCCEEECCCCCCHHHHHHHHHHCCCC
T ss_conf ------6543576505547689788557899999986997
No 5
>2hma_A Probable tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.46 E-value=9.8e-13 Score=96.68 Aligned_cols=172 Identities=14% Similarity=-0.012 Sum_probs=99.6
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf 59948999809656999999999749839999976778877727999999999999988875203561587501103224
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS 86 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (240)
.++|+++.+|||+||++.|++|+++|++|+++|+..+..... .......+.+.+..........++++++......
T Consensus 8 ~k~rV~v~mSGGVDSsvaA~LL~~~G~~V~gv~m~~~~~~~~--~~~c~~~~d~~da~~va~~LgIp~~~~d~~~~f~-- 83 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDE--NGVCTATEDYKDVVAVADQIGIPYYSVNFEKEYW-- 83 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEECCCCCC------CHHHHHHHHHHHHHHHHTCCEEEEECHHHHH--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCC--CCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHH--
T ss_conf 768899992687999999999997799579999978778777--7877837889999999998599889965089999--
Q ss_pred CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC-------------CCCCCHHHHHH
Q ss_conf 44332220110001233101111111223337777774339936511454444345-------------55443024777
Q gi|254781031|r 87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSG-------------YPDCRHDTIRA 153 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~-------------~~~~~~~~~~~ 153 (240)
......-......+..+.-....++. +.+......|...|++.+++|..+..... .+|.+.+..
T Consensus 84 ~~V~~~f~~~y~~G~TPNPcv~CN~~-IKF~~l~~~a~~~g~d~iATGHYAri~~~~~g~~~L~r~~D~~KDQSYfL~-- 160 (376)
T 2hma_A 84 DRVFEYFLAEYRAGRTPNPDVMCNKE-IKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLS-- 160 (376)
T ss_dssp HHTHHHHHHHHHTTCCCCHHHHHHHH-TTTTHHHHHHHTTTCSEEECCCSEEEEECSSSCEEEEECSSTTTCCGGGGT--
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHCHH-HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEE--
T ss_conf 99989899998603799944211234-669999999986156621467342136779986898851677777422444--
Q ss_pred HHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 7767753064321677531389889999999982820
Q gi|254781031|r 154 IETAINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQ 190 (240)
Q Consensus 154 ~~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~ 190 (240)
.+....--++..|+-.++|.||.++|++++..
T Consensus 161 -----~l~~~~L~~~iFPLG~~~K~eVR~iA~~~gl~ 192 (376)
T 2hma_A 161 -----QLSQEQLQKTMFPLGHLEKPEVRRLAEEAGLS 192 (376)
T ss_dssp -----TCCHHHHTTEECTTTTCCHHHHHHHHHHTTCT
T ss_pred -----EECHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf -----32587883666888999778999999875953
No 6
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, structural genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=99.33 E-value=1.7e-11 Score=88.95 Aligned_cols=164 Identities=15% Similarity=0.039 Sum_probs=91.6
Q ss_pred HHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHC
Q ss_conf 21359948999809656999999999749839999976778877727999999999999988875203561587501103
Q gi|254781031|r 4 IIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILG 83 (240)
Q Consensus 4 ~~~~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (240)
.|+.++|+|+.||||||+++++.||.++|++|++++.|.||.. +.+.....+.+ ... ...++++...--
T Consensus 1 ~m~~k~kVvLAySGGLDTSv~l~wL~e~g~eVia~~~d~Gq~~--d~~~i~~kA~~-------~GA--~~~~v~D~r~ef 69 (413)
T 2nz2_A 1 SMSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKE--DFEEARKKALK-------LGA--KKVFIEDVSREF 69 (413)
T ss_dssp ----CEEEEEECCSSHHHHHHHHHHHHTTEEEEEEEEESSCCC--CHHHHHHHHHH-------HTC--SEEEEEECHHHH
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCHH--HHHHHHHHHHH-------HCC--CEEEEECCHHHH
T ss_conf 9987887999908982799999999974986999999699878--88999999998-------399--889997179999
Q ss_pred CCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 22444332220110001233101111111223337777774339936511454444345554430247777767753064
Q gi|254781031|r 84 DISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGME 163 (240)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (240)
....-.........+.. ......+..-..........|...|++.|..|...-+- .--+|..... ...
T Consensus 70 ~~~~i~p~i~ana~yeg--~Y~l~tslaRplia~~~v~~A~~~ga~~vaHG~TGkGN-----DQvRFe~~~~-----aL~ 137 (413)
T 2nz2_A 70 VEEFIWPAIQSSALYED--RYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGN-----DQVRFELSCY-----SLA 137 (413)
T ss_dssp HHHTHHHHHHTTCCBTT--TBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSS-----HHHHHHHHHH-----HHC
T ss_pred HHHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCC-----HHHHHHHHHH-----HHC
T ss_conf 99999999973645588--73124552187999999999998399798358776863-----6888999999-----869
Q ss_pred CCEEEEEEECCC-------CHHHHHHHHHHHCCC
Q ss_conf 321677531389-------889999999982820
Q gi|254781031|r 164 SHVTVHTPLMWL-------KKYETWKLAQDIGGQ 190 (240)
Q Consensus 164 ~~~~i~~P~~~~-------tK~eI~~~~~~~~~~ 190 (240)
..++|++|+... +..|.+..+++.|.+
T Consensus 138 P~~~viaP~Rd~~~~~~~~sR~e~i~y~~~~gi~ 171 (413)
T 2nz2_A 138 PQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIP 171 (413)
T ss_dssp TTCEEECGGGCHHHHTTCC-CHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf 9970256331256665307899999999985999
No 7
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=99.31 E-value=2.7e-11 Score=87.69 Aligned_cols=166 Identities=12% Similarity=0.004 Sum_probs=89.8
Q ss_pred CHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHH
Q ss_conf 12213599489998096569999999997498399999767788777279999999999999888752035615875011
Q gi|254781031|r 2 NDIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAI 81 (240)
Q Consensus 2 ~~~~~~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (240)
.+.+.+++|+|+.|||||||++++.||+++|++|++++.|.||.. +.+.....+ .+... ..+++++...
T Consensus 8 ~~~~~Mk~KVvlAySGGLDTSv~l~~L~e~g~eVi~~~~d~Gq~e--d~~~~~~kA-------~~~GA--~~~~v~D~r~ 76 (421)
T 1vl2_A 8 HHHHHMKEKVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQKD--DFVAIKEKA-------LKTGA--SKVYVEDLRR 76 (421)
T ss_dssp ------CCEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEESSCCC--CHHHHHHHH-------HHHTC--SEEEEEECHH
T ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCHH--HHHHHHHHH-------HHHCC--CEEEEECHHH
T ss_conf 101255370999938874899999999877997999999799767--789999999-------98499--6899986099
Q ss_pred HCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 03224443322201100012331011111112233377777743399365114544443455544302477777677530
Q gi|254781031|r 82 LGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLG 161 (240)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (240)
.-..............+... .....+..-........-+|...|+..+..|...-+- .--+|..... .
T Consensus 77 ef~~~~i~p~I~ana~ye~~--Y~l~tslaRplia~~~v~~A~~~ga~~iaHG~TGkGN-----DQvRFe~~~~-----a 144 (421)
T 1vl2_A 77 EFVTDYIFTALLGNAMYEGR--YLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGN-----DQVRFELTYA-----A 144 (421)
T ss_dssp HHHHHTHHHHHTTTCCBTTT--BCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTTSS-----HHHHHHHHHH-----H
T ss_pred HHHHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC-----CCCHHHHHHH-----H
T ss_conf 99999999999668876786--5342111158999999999997087488336524777-----5410777798-----7
Q ss_pred CCCCEEEEEEECCC-------CHHHHHHHHHHHCCC
Q ss_conf 64321677531389-------889999999982820
Q gi|254781031|r 162 MESHVTVHTPLMWL-------KKYETWKLAQDIGGQ 190 (240)
Q Consensus 162 ~~~~~~i~~P~~~~-------tK~eI~~~~~~~~~~ 190 (240)
......|++|+..+ +..+.+..+++.|.+
T Consensus 145 L~p~~~iiaP~R~~~~~~~~~~R~~~i~ya~~~gI~ 180 (421)
T 1vl2_A 145 LNPNLKVISPWKDPEFLAKFKGRTDLINYAMEKGIP 180 (421)
T ss_dssp HCTTSEEECGGGCHHHHHHTC--CHHHHHHHHHTCC
T ss_pred HCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf 289763158566665654201199999999975999
No 8
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.30 E-value=4.2e-11 Score=86.57 Aligned_cols=152 Identities=19% Similarity=0.162 Sum_probs=83.0
Q ss_pred HHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH
Q ss_conf 22135994899980965699999999974983999997677887772799999999999998887520356158750110
Q gi|254781031|r 3 DIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAIL 82 (240)
Q Consensus 3 ~~~~~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (240)
..||. .|.+|+||||+||+++|+++.+.|++++++|+++|+.+.. +.+..+++++ ..+++.+.....
T Consensus 2 ~~~k~-~kv~V~~SGG~DS~~la~ll~~~g~~v~~v~~~~~~~~~~--~~a~~~a~~l----------gi~~~~~~~~~~ 68 (203)
T 3k32_A 2 NAMKL-MDVHVLFSGGKDSSLSAVILKKLGYNPHLITINFGVIPSY--KLAEETAKIL----------GFKHKVITLDRK 68 (203)
T ss_dssp ----C-EEEEEECCCSHHHHHHHHHHHHTTEEEEEEEEECSSSCTT--HHHHHHHHHH----------TCEEEEEECCTH
T ss_pred CCCCC-CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH--HHHHHHHHHH----------CCCEEEEECCHH
T ss_conf 85533-7089995587899999999997199769999879951478--9999999996----------997189857899
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 32244433222011000123310111111122333777777433993651145444434555443024777776775306
Q gi|254781031|r 83 GDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGM 162 (240)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (240)
. . ........... .|......+..........+...++.|.+.+|...+- +...... ...
T Consensus 69 ~--~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~a~~~~~i~tGh~~dD~~e~~-----~~~~~~~---~~~ 128 (203)
T 3k32_A 69 I--V----EKAADMIIEHK------YPGPAIQYVHKTVLEILADEYSILADGTRRDDRVPKL-----SYSEIQS---LEM 128 (203)
T ss_dssp H--H----HHHHHHHHHHS------SSHHHHHHHHHHHHHHHTTTCSEEECCCCTTCCSSCC-----CHHHHHH---HHH
T ss_pred H--H----HHHHHHHHHCC------CHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCC-----HHHHHCC---CCH
T ss_conf 9--9----88999998469------8249999999999999966999999728807775412-----0877145---202
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 4321677531389889999999982
Q gi|254781031|r 163 ESHVTVHTPLMWLKKYETWKLAQDI 187 (240)
Q Consensus 163 ~~~~~i~~P~~~~tK~eI~~~~~~~ 187 (240)
...+.+.+|+.+.+|.||.+.+.++
T Consensus 129 ~~~~~~~rPL~~~~k~ei~~~a~~~ 153 (203)
T 3k32_A 129 RKNIQYITPLMGFGYKTLRHLASEF 153 (203)
T ss_dssp HHTCEEECGGGGCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHC
T ss_conf 2100002533598999999999970
No 9
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii OT3} PDB: 2z0c_A 3a4i_A
Probab=99.28 E-value=9.5e-11 Score=84.34 Aligned_cols=160 Identities=22% Similarity=0.170 Sum_probs=91.5
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCEEEECHHHCC
Q ss_conf 5994899980965699999999974-98399999767788777279999999999999888752-035615875011032
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDR-FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKD-SLGEDHILPLAILGD 84 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~-~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (240)
..+++|+.||||+||+++|+++.+. |.++++|+++.|--...+.+. .+ ..... .......++......
T Consensus 19 g~~kVvvalSGGVDSsV~A~L~~kAlGd~v~aV~~d~g~~r~~E~~~---~~-------~~~~~~~gi~~~~vd~~~~~~ 88 (308)
T 2dpl_A 19 GDSKAIIALSGGVDSSTAAVLAHKAIGDRLHAVFVNTGFLRKGEPEF---VV-------KTFRDEFGMNLHYVDAQDRFF 88 (308)
T ss_dssp TTSCEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCCCTTHHHH---HH-------HHHTTTTCCEEEEEECHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHH---HH-------HHHHHCCCCCCEEEECHHHHH
T ss_conf 89989999048899999999999973886899994788788127999---99-------866402586507996789877
Q ss_pred CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 24443322201100012331011111112233377777743399365114544443455544302477777677530643
Q gi|254781031|r 85 ISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMES 164 (240)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (240)
..-.... ............+.......+..+|...+..|....|...+... .....+.-......
T Consensus 89 ~~l~gv~-----------~pe~k~~~~~~~~~~~l~~~A~~~g~~~l~~Gt~~~D~~E~~~g----ikt~~~~Ggl~~~~ 153 (308)
T 2dpl_A 89 SALKGVT-----------DPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDWIESQGK----IKSHHNVGGLPEKL 153 (308)
T ss_dssp HHTTTCC-----------CHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC-------------------------C
T ss_pred HHHCCCC-----------CHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHCCC----EEEEECCCCCCHHH
T ss_conf 7652889-----------95897627608999999999998399585134020425541353----26761578862653
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCH
Q ss_conf 216775313898899999999828200
Q gi|254781031|r 165 HVTVHTPLMWLKKYETWKLAQDIGGQD 191 (240)
Q Consensus 165 ~~~i~~P~~~~tK~eI~~~~~~~~~~~ 191 (240)
..++..|+..++|.||.+++..+|.+.
T Consensus 154 ~~~~iePL~~L~K~EVR~la~~LGlP~ 180 (308)
T 2dpl_A 154 NLKLIEPLRDLYKDEVRELAKFLGLPE 180 (308)
T ss_dssp CCEEECTTTTCCHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHCHHHHHHHHHHHCCCH
T ss_conf 544123788745699999999809998
No 10
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.26.2.6 d.308.1.1
Probab=99.26 E-value=1.6e-11 Score=89.21 Aligned_cols=127 Identities=14% Similarity=0.068 Sum_probs=79.7
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--EEEECHHHCC
Q ss_conf 59948999809656999999999749839999976778877727999999999999988875203561--5875011032
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGED--HILPLAILGD 84 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 84 (240)
..+++++|+|||+ |.+++|+++++|.+|+++||+.+ +...+ ++.+....+..+.... +.++..
T Consensus 178 s~Gk~l~LlSGGi-SpVAa~~~mKRG~~v~~v~f~~~---~~~~~-------kv~~l~~~l~~~~~~~~~~~~~~~---- 242 (307)
T 1vbk_A 178 TEGRMIGILHDEL-SALAIFLMMKRGVEVIPVYIGKD---DKNLE-------KVRSLWNLLKRYSYGSKGFLVVAE---- 242 (307)
T ss_dssp TTCEEEEECSSHH-HHHHHHHHHHBTCEEEEEEESCS---SHHHH-------HHHHHHHHHHTTCTTSCCCCEEES----
T ss_pred CCCCEEEEECCCC-CHHHHHHHHHCCCEEEEEEECCC---HHHHH-------HHHHHHHHHHHHCCCCCEEEEECC----
T ss_conf 7783589833773-09999999966988999996897---88999-------999999999975899847999767----
Q ss_pred CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 24443322201100012331011111112233377777743399365114544443455544302477777677530643
Q gi|254781031|r 85 ISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMES 164 (240)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (240)
.+......+...++..+.+|.+-++.+..+.+ +.......
T Consensus 243 ------------------------------~~~~~~~ia~~~~~~~ivtGeslgQVaSQt~n----------~~~~~~~~ 282 (307)
T 1vbk_A 243 ------------------------------SFDRVLKLIRDFGVKGVIKGLRPNDLNSEVSE----------ITEDFKMF 282 (307)
T ss_dssp ------------------------------SHHHHHHHHHHHTCCEEECCCCGGGCCTTCHH----------HHHHHHHC
T ss_pred ------------------------------CHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH----------HHHHHHCC
T ss_conf ------------------------------68999999998499899935152588999998----------99998415
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 216775313898899999999828
Q gi|254781031|r 165 HVTVHTPLMWLKKYETWKLAQDIG 188 (240)
Q Consensus 165 ~~~i~~P~~~~tK~eI~~~~~~~~ 188 (240)
...|++|++.++|.||++.+++.|
T Consensus 283 ~~pi~RPLig~DK~EIi~~Ar~IG 306 (307)
T 1vbk_A 283 PVPVYYPLIALPEEYIKSVKERLG 306 (307)
T ss_dssp SSCEECHHHHSCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 987024837899899999999868
No 11
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=99.24 E-value=2.5e-11 Score=87.94 Aligned_cols=173 Identities=12% Similarity=0.024 Sum_probs=93.4
Q ss_pred CHHHCCCCCEEEEEECCHHHHHHHHHHHH----CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 12213599489998096569999999997----49839999976778877727999999999999988875203561587
Q gi|254781031|r 2 NDIIKKAPSALLLFSGGQDSSTCLSWALD----RFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHIL 77 (240)
Q Consensus 2 ~~~~~~~~~av~l~SGGlDS~~~l~~l~~----~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (240)
+.|+++..+.+|.+|||.||+++|+.|.. .+.+++++|+|+|.+.. +.+.....+ ...+... ..+.+..
T Consensus 12 ~~l~~~~~~v~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~hvnh~lr~~-~s~~~~~~~---~~~~~~~---~i~~~~~ 84 (464)
T 3a2k_A 12 HQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGR-ESEEEMEFV---KRFCVER---RILCETA 84 (464)
T ss_dssp TCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTH-HHHHHHHHH---HHHHHHT---TCEEEEE
T ss_pred CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC-CHHHHHHHH---HHHHHHC---CCEEEEE
T ss_conf 38999839899998071999999999999889729859999977989986-669999999---9999984---9919999
Q ss_pred ECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHH-HH
Q ss_conf 50110322444332220110001233101111111223337777774339936511454444345554430247777-76
Q gi|254781031|r 78 PLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAI-ET 156 (240)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~ 156 (240)
.... .... ..............|. ......+...+++.+++|.+.+|..- .++..+ ..
T Consensus 85 ~~~~-~~~~----------~~~~~~~e~~aR~~Ry----~~~~~~~~~~~~~~i~~aHh~dD~~E------T~l~~l~rg 143 (464)
T 3a2k_A 85 QIDV-PAFQ----------RSAGLGAQEAARICRY----RFFAELMEKHQAGYVAVGHHGDDQVE------TILMRLVRG 143 (464)
T ss_dssp ECCC-HHHH----------TTTTCCSHHHHHHHHH----HHHHHHHHTTTCCEEECCCCHHHHHH------HHHHHHHHC
T ss_pred EEEE-EHHH----------CCCCCCHHHHHHHHHH----HHHHCCCCCCCCCEEEEEEECCCHHH------HHHHHHHHH
T ss_conf 9860-0110----------2589898999999998----76412333456315875420475899------999875431
Q ss_pred --------HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCC
Q ss_conf --------7753064321677531389889999999982820001432553721628886
Q gi|254781031|r 157 --------AINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKR 208 (240)
Q Consensus 157 --------~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~ 208 (240)
+..........+++|++..+|.||...+...+..... --||..+..
T Consensus 144 ~~~~gl~~~~~~~~~~~~~~iRPll~~~k~ei~~y~~~~~l~~~~------D~sN~~~~~ 197 (464)
T 3a2k_A 144 STSKGYAGIPVKRPFHGGYLIRPFLAVSRAEIEAYCRQMGLSPRC------DPSNEKDDY 197 (464)
T ss_dssp CCSSSTTCSCSEEECSSSEEECGGGGSCHHHHHHHHHHTCCSSCS------CTTCCCTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCC
T ss_conf 001233455321333456577899975799999999984898666------899767702
No 12
>1k92_A Argininosuccinate synthase, argininosuccinate; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=99.22 E-value=1.3e-10 Score=83.57 Aligned_cols=163 Identities=10% Similarity=-0.009 Sum_probs=89.7
Q ss_pred HCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCC
Q ss_conf 13599489998096569999999997498399999767788777279999999999999888752035615875011032
Q gi|254781031|r 5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGD 84 (240)
Q Consensus 5 ~~~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (240)
|...||+|+.||||||+++++-||.++|++|+++++|.||......+....-+.++. . ...++++....-
T Consensus 7 ~~~gkKVvLAySGGLDTSv~l~wL~e~g~eVia~~~DvGQ~~~ed~e~i~~kA~~~G-------A--~~~~viD~r~eF- 76 (455)
T 1k92_A 7 LPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRAMEYG-------A--ENARLIDCRKQL- 76 (455)
T ss_dssp CCTTSEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEECCCTTCSCTTHHHHHHHHHT-------C--SEEEEEECHHHH-
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHC-------C--CEEEEECCHHHH-
T ss_conf 998988999948982899999999974986999999799985041799999999719-------9--789997189999-
Q ss_pred CCCCCCCCCH--HHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCH-HHHHHHHHHHH
Q ss_conf 2444332220--110001--233101111111223337777774339936511454444345554430-24777776775
Q gi|254781031|r 85 ISHSSLTKNV--AMKIQD--NNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRH-DTIRAIETAIN 159 (240)
Q Consensus 85 ~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 159 (240)
.. ...... ...+.. ........+..-.+........|...|+..+..|...-+ +-+ +|.....
T Consensus 77 -~~-~~i~~i~a~a~y~~~~~~~Y~l~tslaRplia~~~v~~A~~~ga~aiaHG~TGkG------NDQvRFe~~~~---- 144 (455)
T 1k92_A 77 -VA-EGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKG------NDIERFYRYGL---- 144 (455)
T ss_dssp -HH-HHHHHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTS------SHHHHHHHHHH----
T ss_pred -HH-HHHHHHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCC------CCHHHHHHHHH----
T ss_conf -99-9899998553554103566547652089889999999999829929954766676------50565777897----
Q ss_pred HCCCCCEEEEEEECCC-------CHHHHHHHHHHHCCC
Q ss_conf 3064321677531389-------889999999982820
Q gi|254781031|r 160 LGMESHVTVHTPLMWL-------KKYETWKLAQDIGGQ 190 (240)
Q Consensus 160 ~~~~~~~~i~~P~~~~-------tK~eI~~~~~~~~~~ 190 (240)
.....++|++|+..+ +..+.++.+.+.|.+
T Consensus 145 -al~P~l~viaPwRd~~~~~~~~sR~~~i~ya~~~gIp 181 (455)
T 1k92_A 145 -LTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFD 181 (455)
T ss_dssp -HHCTTCEEECGGGCHHHHHHSSSHHHHHHHHHHTTCC
T ss_pred -HCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf -4099863556845066787776599999989971999
No 13
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=99.21 E-value=5.9e-11 Score=85.61 Aligned_cols=160 Identities=17% Similarity=0.100 Sum_probs=89.5
Q ss_pred HHHCCCCCEEEEEECCHHHHHHHHHHHHC-----CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 22135994899980965699999999974-----9839999976778877727999999999999988875203561587
Q gi|254781031|r 3 DIIKKAPSALLLFSGGQDSSTCLSWALDR-----FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHIL 77 (240)
Q Consensus 3 ~~~~~~~~av~l~SGGlDS~~~l~~l~~~-----~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (240)
.|++..+|.++.+|||.||+++|+.|.+- ...+.++|+|+|.+..+..+ .+.+...+... ..+.++.
T Consensus 19 ~l~~~~~kvlva~SGG~DS~~Ll~~l~~l~~~~~~~~i~~~hv~h~~r~~s~~~-----~~~v~~~~~~~---~i~~~~~ 90 (317)
T 1wy5_A 19 KIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERD-----EEFCKEFAKER---NMKIFVG 90 (317)
T ss_dssp CSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHH-----HHHHHHHHHHH---TCCEEEE
T ss_pred HCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHH-----HHHHHHHHHHC---CCCCCCC
T ss_conf 467997859999818299999999999999877998099999618999755999-----99999999960---6242211
Q ss_pred ECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHH---
Q ss_conf 50110322444332220110001233101111111223337777774339936511454444345554430247777---
Q gi|254781031|r 78 PLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAI--- 154 (240)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~--- 154 (240)
.... ..... .............|. ......+...+++.+++|.+.+|..-+- ++...
T Consensus 91 ~~~~-~~~~~----------~~~~~~e~~aR~~Ry----~~l~~~~~~~~~~~i~~gHh~dD~~ET~-----l~~l~rG~ 150 (317)
T 1wy5_A 91 KEDV-RAFAK----------ENRMSLEEAGRFLRY----KFLKEILESEGFDCIATAHHLNDLLETS-----LLFFTRGT 150 (317)
T ss_dssp ECCH-HHHHH----------HTTCCHHHHHHHHHH----HHHHHHHHHTTCSEEECCCCHHHHHHHH-----HHHHHHCC
T ss_pred EEEE-EEECC----------CCCCCHHHHHHHHHH----HHHHHHHHHHCCCEEEECCCCCCHHHHH-----HHHHHCCC
T ss_conf 0234-43114----------799887899999999----8855323431266467613012288899-----98874287
Q ss_pred --HHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCH
Q ss_conf --7677530643216775313898899999999828200
Q gi|254781031|r 155 --ETAINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQD 191 (240)
Q Consensus 155 --~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~ 191 (240)
..+.. .......+++|+++.+|.||.+.+...+.+.
T Consensus 151 ~~~gl~~-~~~~~~~i~RPLl~~~k~ei~~y~~~~~i~~ 188 (317)
T 1wy5_A 151 GLDGLIG-FLPKEEVIRRPLYYVKRSEIEEYAKFKGLRW 188 (317)
T ss_dssp CHHHHHC-SCSEETTEECTTTTCCHHHHHHHHHHTTCCC
T ss_pred CCCCCCC-CCCCCCCCCCHHHCCCHHHHHHHHHHCCCCC
T ss_conf 7678877-6654332166044177999999999759997
No 14
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATP, ATPase, PP-type, PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=99.18 E-value=1.2e-10 Score=83.83 Aligned_cols=158 Identities=12% Similarity=0.018 Sum_probs=85.4
Q ss_pred CHHHCCCCCEEEEEECCHHHHHHHHHHHH-----CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 12213599489998096569999999997-----4983999997677887772799999999999998887520356158
Q gi|254781031|r 2 NDIIKKAPSALLLFSGGQDSSTCLSWALD-----RFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHI 76 (240)
Q Consensus 2 ~~~~~~~~~av~l~SGGlDS~~~l~~l~~-----~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 76 (240)
|..+-+++|.+|.+|||.||+++|+.|.+ .+.++.++|+|+|-|..+..+ + +.+...+. ....+.+.
T Consensus 7 ~~~~~~~~~vlva~SGG~DS~~ll~~l~~~~~~~~~~~~~~~h~~h~~r~~s~~~-~----~~v~~~~~---~~~i~~~~ 78 (433)
T 1ni5_A 7 NRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAW-V----THCENVCQ---QWQVPLVV 78 (433)
T ss_dssp HHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHH-H----HHHHHHHH---HTTCCEEE
T ss_pred HHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHH-H----HHHHHHHH---HCCCCEEE
T ss_conf 4325899829999818099999999999989758998199999829889557999-9----99999999---75997899
Q ss_pred EECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 75011032244433222011000123310111111122333777777433993651145444434555443024777776
Q gi|254781031|r 77 LPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIET 156 (240)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (240)
..... .. . ...........|...+ .+...+...+.++.+.+|..- ..++.....
T Consensus 79 ~~~~~-~~--~------------~~~~e~~aR~~Ry~~~------~~~~~~~~~i~~aHh~dD~~E-----t~l~~l~rg 132 (433)
T 1ni5_A 79 ERVQL-AQ--E------------GLGIEAQARQARYQAF------ARTLLPGEVLVTAQHLDDQCE-----TFLLALKRG 132 (433)
T ss_dssp ECCCC-CC--S------------SSTTTTHHHHHHHHHH------HHTCCTTEEEECCCCHHHHHH-----HHHHHHTTT
T ss_pred EEEEC-CC--C------------CCCHHHHHHHHHHHHH------HHHHCCCCEEEEEEECHHHHH-----HHHHHHHCC
T ss_conf 99964-78--8------------8887999999999987------865416570322001103899-----999987257
Q ss_pred HH--H------HCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHHC
Q ss_conf 77--5------3064321677531389889999999982820001
Q gi|254781031|r 157 AI--N------LGMESHVTVHTPLMWLKKYETWKLAQDIGGQDLV 193 (240)
Q Consensus 157 ~~--~------~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~~~ 193 (240)
.- . ........+++|++..+|.||.+.+.+.+.+...
T Consensus 133 ~~~~gl~~~~~~~~~~~~~i~RPlL~~~k~ei~~y~~~~~i~~~e 177 (433)
T 1ni5_A 133 SGPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIE 177 (433)
T ss_dssp CCTTGGGCCCSEEEETTEEEECGGGSCCHHHHHHHHHHTTCCCBC
T ss_pred CCCCCCCCCCCEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 764334343222115785088750018699999998746776203
No 15
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=99.12 E-value=1.7e-09 Score=76.51 Aligned_cols=156 Identities=16% Similarity=0.064 Sum_probs=85.6
Q ss_pred CEEEEEECCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCEEEECHHHCCCCC
Q ss_conf 4899980965699999999974-98399999767788777279999999999999888752035-615875011032244
Q gi|254781031|r 10 SALLLFSGGQDSSTCLSWALDR-FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLG-EDHILPLAILGDISH 87 (240)
Q Consensus 10 ~av~l~SGGlDS~~~l~~l~~~-~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 87 (240)
|+|+.||||||+++++.||.++ +++|++++.|.||.. +.+.....+ .. ... ..++++...--....
T Consensus 2 KVvLAySGGLDTSv~l~wL~e~~~~eVi~~~~d~Gq~~--d~~~i~~kA-------~~---~GA~~~~v~D~r~ef~~~~ 69 (400)
T 1kor_A 2 KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGE--EVEEAREKA-------LR---TGASKAIALDLKEEFVRDF 69 (400)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTCEEEEEEEESSCSS--CHHHHHHHH-------HH---HTCSEEEEEECHHHHHHHT
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCHH--HHHHHHHHH-------HH---HCCCEEEEECCHHHHHHHH
T ss_conf 69999489817999999997405988999997088667--669999999-------98---4998899975799999999
Q ss_pred CCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHH-HHHHHHHHHHHCCCCCE
Q ss_conf 43322201100012331011111112233377777743399365114544443455544302-47777767753064321
Q gi|254781031|r 88 SSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHD-TIRAIETAINLGMESHV 166 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 166 (240)
-.........+.+.. .......-..........|...|+..+..|...- .+-+. |..... ......
T Consensus 70 i~p~i~ana~Ye~~Y--~l~tslaRplia~~~v~~A~~~ga~~iaHG~TGk------GNDQvRFe~~~~-----al~P~l 136 (400)
T 1kor_A 70 VFPMMRAGAVYEGYY--LLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGK------GNDQVRFELTAY-----ALKPDI 136 (400)
T ss_dssp HHHHHHTTCCBTTTB--CCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTT------SSHHHHHHHHHH-----HHCTTC
T ss_pred HHHHHHCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCC------CCCHHHHHHHHH-----HHCCCC
T ss_conf 999997386557876--2345410647999999998544976994377757------872366888999-----759997
Q ss_pred EEEEEECC---CCHHHHHHHHHHHCCC
Q ss_conf 67753138---9889999999982820
Q gi|254781031|r 167 TVHTPLMW---LKKYETWKLAQDIGGQ 190 (240)
Q Consensus 167 ~i~~P~~~---~tK~eI~~~~~~~~~~ 190 (240)
+|++|+.. .+..+.++.+++.|.+
T Consensus 137 ~iiaPwRd~~~~sR~~~i~ya~~~gIp 163 (400)
T 1kor_A 137 KVIAPWREWSFQGRKEMIAYAEAHGIP 163 (400)
T ss_dssp EEECGGGTCCCCSHHHHHHHHHHTTCC
T ss_pred EEECCCHHCCCCCHHHHHHHHHHCCCC
T ss_conf 485010102536679999999984999
No 16
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=98.96 E-value=1.1e-08 Score=71.59 Aligned_cols=176 Identities=17% Similarity=0.128 Sum_probs=84.5
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHC-C-CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCC
Q ss_conf 5994899980965699999999974-9-8399999767788777279999999999999888752035615875011032
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDR-F-DRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGD 84 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~-~-~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (240)
..+|+++++|||+||+++|+++.+. | ..+++|++|.|.....+.+......+++ ......++.+..-.
T Consensus 239 g~~kVl~~lSGGVDStV~A~Ll~kAlG~drl~~v~IDnGlmRk~E~~~V~~~~~~l----------gl~l~~vdas~~F~ 308 (697)
T 2vxo_A 239 GTSKVLVLLSGGVDSTVCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKL----------GIQVKVINAAHSFY 308 (697)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHSCGGGEEEEEEECSCCCSSTTHHHHHHHHHT----------TCCEEEEECHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHC----------CCCEEEECCHHHHH
T ss_conf 88448995058720699999999851647469998265447755499999999983----------99679982678641
Q ss_pred CCCCCCCC-CHHHH--------HCCCCCCHHHHHHHHHHHHHHHHHHHHHCC----CCEEECCCCCCCCCCCC----CCC
Q ss_conf 24443322-20110--------001233101111111223337777774339----93651145444434555----443
Q gi|254781031|r 85 ISHSSLTK-NVAMK--------IQDNNLPNTFVPGRNIIFLVFAATLAYRLG----ITNIVIGVCETDYSGYP----DCR 147 (240)
Q Consensus 85 ~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g----~~~i~~~~~~~~~~~~~----~~~ 147 (240)
........ ..... -.....++.-.-.-.-.++.+....+...+ ...+.-|....|.--+- ..+
T Consensus 309 ~~~t~~~~~~~~~~~~~~~l~~L~gv~dPEeKRKIIG~tFi~Vfe~~~~~~~~~~~~~~L~QGTlypDvIES~~~~~~~~ 388 (697)
T 2vxo_A 309 NGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGTLRPDLIESASLVASGK 388 (697)
T ss_dssp TCCCBCC----------CBCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTSEEEECCCSSCCSBCCHHHHHHSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCCCCCC
T ss_conf 35445433344520678899975287788997656507659999988877414641104323651703430256677776
Q ss_pred HHHHHHHHHHH--HHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHH
Q ss_conf 02477777677--5306432167753138988999999998282000
Q gi|254781031|r 148 HDTIRAIETAI--NLGMESHVTVHTPLMWLKKYETWKLAQDIGGQDL 192 (240)
Q Consensus 148 ~~~~~~~~~~~--~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~~ 192 (240)
...++...+.. ........+++-|+..+-|.||.+++.+||.+..
T Consensus 389 a~~IKsHHNvggLp~~l~~~~~~vEPLr~LfKDEVR~lG~~LGlP~~ 435 (697)
T 2vxo_A 389 AELIKTHHNDTELIRKLREEGKVIEPLKDFHKDEVRILGRELGLPEE 435 (697)
T ss_dssp CCGGGSCCSSCHHHHHHHHTTCEECGGGGSCHHHHHHHHHHTTCCHH
T ss_pred CCCEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 55455011157774433013540346777747999999998698889
No 17
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=98.92 E-value=3.3e-09 Score=74.82 Aligned_cols=150 Identities=15% Similarity=0.040 Sum_probs=73.8
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf 9948999809656999999999749-839999976778877727999999999999988875203561587501103224
Q gi|254781031|r 8 APSALLLFSGGQDSSTCLSWALDRF-DRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS 86 (240)
Q Consensus 8 ~~~av~l~SGGlDS~~~l~~l~~~~-~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (240)
.+++|+-+|||+||+++|+++.+.+ .++++|++..+.........|..+++. .......++...+....
T Consensus 25 ~k~vvvglSGGVDSav~A~La~~a~~~~v~~v~mp~~~~~~~~~~~A~~~a~~----------Lgi~~~~i~~~~~~~~~ 94 (268)
T 1xng_A 25 FKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKTDALNLCEK----------FSIPYTEYSIAPYDAIF 94 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHGGGEEEEECCCSSSCHHHHHHHHHHHHH----------HTCCEEECCCHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCEEEECCCHHCCHHHHHHHHHHHHH----------HHHCCCCCCHHHHHHHH
T ss_conf 98199978688999999999998503226787135010571557999999998----------33023013279999888
Q ss_pred CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 44332220110001233101111111223337777774339936511454444345554430247777767753064321
Q gi|254781031|r 87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHV 166 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (240)
.......... .......| .........+...+...+.++.......+ + ....+...
T Consensus 95 ~~~~~~~~~~-------~~~n~~aR--~r~~~ly~~a~~~~~~v~gt~n~~e~~~g-------~--------~t~~gd~~ 150 (268)
T 1xng_A 95 SSHFKDASLT-------RKGNFCAR--LRMAFLYDYSLKSDSLVIGTSNKSERMLG-------Y--------GTLFGDLA 150 (268)
T ss_dssp HHHCTTCCHH-------HHHHHHHH--HHHHHHHHHHHHHTCEEBCCCCHHHHHHT-------C--------SCTTTTTC
T ss_pred HHHHHHHHHH-------HHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCEEEC-------C--------CCCHHHHC
T ss_conf 8750124567-------87788999--87888888899709824688775431035-------6--------76555426
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCH
Q ss_conf 6775313898899999999828200
Q gi|254781031|r 167 TVHTPLMWLKKYETWKLAQDIGGQD 191 (240)
Q Consensus 167 ~i~~P~~~~tK~eI~~~~~~~~~~~ 191 (240)
..+.|+..++|.||.++++.+|.+.
T Consensus 151 ~~~~Pl~~L~K~eVr~LAr~lglP~ 175 (268)
T 1xng_A 151 CAINPIGELFKTEVYELARRLNIPK 175 (268)
T ss_dssp CSEETTTTSCHHHHHHHHHHTTCCH
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCH
T ss_conf 6841146970999999999809969
No 18
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=98.91 E-value=4e-09 Score=74.30 Aligned_cols=38 Identities=24% Similarity=0.196 Sum_probs=33.2
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 99489998096569999999997498399999767788
Q gi|254781031|r 8 APSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQR 45 (240)
Q Consensus 8 ~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~ 45 (240)
.+.+||.+|||+||+++|.++.+.+.+++++++.....
T Consensus 29 ~~~vvvglSGGVDSav~A~L~~~a~~~v~~v~m~~~~~ 66 (249)
T 3fiu_A 29 AEGFVIGLSGGIDSAVAASLAVKTGLPTTALILPSDNN 66 (249)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHTTSCEEEEECCCTTS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 98299967798999999999998298752523687633
No 19
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphatase, transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli K12} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.87 E-value=1.4e-08 Score=70.89 Aligned_cols=164 Identities=18% Similarity=0.107 Sum_probs=82.6
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHH--HC
Q ss_conf 5994899980965699999999974-98399999767788777279999999999999888752035615875011--03
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDR-FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAI--LG 83 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~-~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 83 (240)
-.+|++|.+|||+||+++|.++-+. |..+++|++|.|---..+.+ .+. +..... .......++.+. +.
T Consensus 226 g~~kVi~~lSGGVDSsV~A~Ll~kAig~~l~cvfvD~GllRk~E~~---~v~----~~~~~~--~~~~~~~vda~~~Fl~ 296 (525)
T 1gpm_A 226 GDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAE---QVL----DMFGDH--FGLNIVHVPAEDRFLS 296 (525)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCSCTTHHH---HHH----HHHTTT--TCCCEEEEECHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHH---HHH----HHHHHH--CCCEEEEECCHHHHHH
T ss_conf 8870799724882169999999873056068998278766467299---999----999986--2970799761888899
Q ss_pred CCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCCC---CCCCCCCHHHHHHHHHHHH
Q ss_conf 2244433222011000123310111111122333777777433-99365114544443---4555443024777776775
Q gi|254781031|r 84 DISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRL-GITNIVIGVCETDY---SGYPDCRHDTIRAIETAIN 159 (240)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-g~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 159 (240)
.+.... .++.-.-.-.-.++.+....+..+ ++..+.-|....|. ..........+....+.-.
T Consensus 297 ~L~gv~-------------dPE~KRkiIG~~Fi~vf~~~~~~~~~~~~L~QGTlypDviEs~~~~~~~a~~IKsHHNvgg 363 (525)
T 1gpm_A 297 ALAGEN-------------DPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHNVGG 363 (525)
T ss_dssp HHTTCC-------------CHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHHHHHHTTC-----------------
T ss_pred HHCCCC-------------CHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEEECCCCC
T ss_conf 754876-------------8889604001789999999985025770884044244066541477898773476534676
Q ss_pred HCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHH
Q ss_conf 306432167753138988999999998282000
Q gi|254781031|r 160 LGMESHVTVHTPLMWLKKYETWKLAQDIGGQDL 192 (240)
Q Consensus 160 ~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~~ 192 (240)
.......+++-|+..+-|.||.+++.+||.+..
T Consensus 364 lp~~~~~~liEPl~~l~KdEVR~lg~~Lglp~~ 396 (525)
T 1gpm_A 364 LPKEMKMGLVEPLKELFKDEVRKIGLELGLPYD 396 (525)
T ss_dssp -----CCEEECTTTTCCHHHHHHHHHHTTCCHH
T ss_pred CCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 510146630043888858999999987299888
No 20
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni}
Probab=98.85 E-value=1.2e-08 Score=71.28 Aligned_cols=151 Identities=17% Similarity=0.099 Sum_probs=74.0
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCC
Q ss_conf 5994899980965699999999974-983999997677887772799999999999998887520356158750110322
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDR-FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDI 85 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~-~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (240)
..+++|+.+|||+||+++|.++.+. +.++++++++.+.....+.+.+...++. ....+..+........
T Consensus 25 g~~~vvlglSGGVDSsv~a~La~~al~~~v~~v~~~~~~~~~~~~~~a~~la~~----------lgi~~~~~~~~~~~~~ 94 (249)
T 3p52_A 25 QSQGVVLGLSGGIDSALVATLCKRALKENVFALLMPTQISNKANLEDALRLCAD----------LNLEYKIIEIQSILDA 94 (249)
T ss_dssp SCSEEEEECCSSHHHHHHHHHHHHHHTTSEEEEECCSCCSSCHHHHHHHHHHHH----------HTCEEEECCCHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----------HCCCCCEEHHHHHHHH
T ss_conf 998299978898899999999998448717998578411000689999999998----------1776000001468888
Q ss_pred CCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 44433222011000123310111111122333777777433993651145444434555443024777776775306432
Q gi|254781031|r 86 SHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESH 165 (240)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (240)
........ ...................++...+. +..+... ..++..- . ....+..
T Consensus 95 ~~~~~~~~---------~~~~~~n~~ar~r~~~l~~~a~~~~~--~v~~t~n---------kse~~~G---~-~tk~gd~ 150 (249)
T 3p52_A 95 FIKQSENT---------TLVSLGNFAARIRMSLLYDYSALKNS--LVIGTSN---------KSELLLG---Y-GTIYGDL 150 (249)
T ss_dssp HHTTCSCC---------CHHHHHHHHHHHHHHHHHHHHHHTTE--EEBCCCC---------HHHHHHT---C-SCTTTTT
T ss_pred HHHCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHCCC--EEECCCC---------HHHHHCC---C-HHHHHHC
T ss_conf 75100100---------04678899998878999876635285--5767885---------5545257---3-2235315
Q ss_pred EEEEEEECCCCHHHHHHHHHHHCCCH
Q ss_conf 16775313898899999999828200
Q gi|254781031|r 166 VTVHTPLMWLKKYETWKLAQDIGGQD 191 (240)
Q Consensus 166 ~~i~~P~~~~tK~eI~~~~~~~~~~~ 191 (240)
...+.|+.+++|.||.++++.+|.+.
T Consensus 151 ~~~~~Pl~~L~K~eVr~La~~lg~p~ 176 (249)
T 3p52_A 151 ACAFNPIGSLYKSEIYALAKYLNLHE 176 (249)
T ss_dssp CCSEETTTTSCHHHHHHHHHHTTCCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCHH
T ss_conf 65200157978999999999969819
No 21
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway; 2.10A {Thermus thermophilus HB8} PDB: 2ywc_A*
Probab=98.83 E-value=5e-08 Score=67.48 Aligned_cols=164 Identities=19% Similarity=0.052 Sum_probs=88.6
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHH--HCC
Q ss_conf 599489998096569999999997498399999767788777279999999999999888752035615875011--032
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAI--LGD 84 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 84 (240)
-.++++|.+|||+||+++|.++.+.+.+.++|++|.|---..+.+. + .+..+.. ......++.+. ++.
T Consensus 208 g~~~Vi~~lSGGVDSsV~A~Ll~kA~~~~~cvfVD~GllRk~E~~~---v----~~~~~~~---~~~~~~vda~~~Fl~~ 277 (503)
T 2ywb_A 208 GKDRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLLRLGEREE---V----EGALRAL---GVNLLVVDAKERFLKA 277 (503)
T ss_dssp TTSEEEEEECSSHHHHHHHHHHHHHTCEEEEEEEECSCSCTTHHHH---H----HHHHHHT---TCCEEEEECHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHH---H----HHHHHHC---CCCEEEEECHHHHHHH
T ss_conf 8861799834870659999999997653089994687665760999---9----9999874---9858999604877786
Q ss_pred CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCCCCC-CCCHHHHHHHHHHHHHCC
Q ss_conf 2444332220110001233101111111223337777774339-93651145444434555-443024777776775306
Q gi|254781031|r 85 ISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLG-ITNIVIGVCETDYSGYP-DCRHDTIRAIETAINLGM 162 (240)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g-~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 162 (240)
+..... ++...-.-...++......+...+ ...+.-|..-.|.--+- ...........+.-..-.
T Consensus 278 L~gv~d-------------PE~KRkiIG~~Fi~vfe~~~~~~~~~~~L~QGTlypDvIES~~~~~~~~iKsHHNvgglp~ 344 (503)
T 2ywb_A 278 LKGVED-------------PEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIESAGGHGAAKIKSHHNVGGLPE 344 (503)
T ss_dssp HTTCCC-------------HHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHHHC-----------------CCCS
T ss_pred HCCCCC-------------HHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCHH
T ss_conf 259879-------------5897432038999999999875489679952761365340367777777603156886446
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHCCCHHC
Q ss_conf 4321677531389889999999982820001
Q gi|254781031|r 163 ESHVTVHTPLMWLKKYETWKLAQDIGGQDLV 193 (240)
Q Consensus 163 ~~~~~i~~P~~~~tK~eI~~~~~~~~~~~~~ 193 (240)
....+++-|+..+-|.||.+++.+||.+..+
T Consensus 345 ~~~~klvEPl~~lfKdEVR~lg~~Lglp~~~ 375 (503)
T 2ywb_A 345 DLEFELLEPFRLLFKDEVRELALLLGLPDTL 375 (503)
T ss_dssp SCCCEEECTTTTCCHHHHHHHHHHTTCCHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 6230045689998578999999986898998
No 22
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Pyrococcus horikoshii OT3}
Probab=98.70 E-value=5.3e-08 Score=67.29 Aligned_cols=149 Identities=18% Similarity=0.141 Sum_probs=73.3
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHC-C-CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCC
Q ss_conf 994899980965699999999974-9-83999997677887772799999999999998887520356158750110322
Q gi|254781031|r 8 APSALLLFSGGQDSSTCLSWALDR-F-DRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDI 85 (240)
Q Consensus 8 ~~~av~l~SGGlDS~~~l~~l~~~-~-~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (240)
.+++|+.+|||+||+++|+++.+. | ..|++++..+... ...+.+...++.+ ......++.......
T Consensus 22 ~~~vvvglSGGVDSav~A~La~~AlG~~~v~~v~~~~~~~--~~~~~A~~~~~~l----------gi~~~~i~i~~~~~~ 89 (257)
T 2e18_A 22 NNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFEN--KDVEDAKLVAEKL----------GIGYKVINIKPIVDS 89 (257)
T ss_dssp TTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSCS--THHHHHHHHHHHH----------TCEEEECCCHHHHHH
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCH--HHHHHHHHHHHHH----------CCCCCEEECCHHHHH
T ss_conf 9978996887799999999999863864168851576530--3479999999863----------787302430478999
Q ss_pred CCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 44433222011000123310111111122333777777433993651145444434555443024777776775306432
Q gi|254781031|r 86 SHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESH 165 (240)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (240)
........... ..................+...+...+..+...+ ..... ....+..
T Consensus 90 ~~~~l~~~~~~--------~~~~ni~ar~r~~~l~~~a~~~~~~vl~t~n~se-----------~~~g~----~t~~gd~ 146 (257)
T 2e18_A 90 FVENLELNLDR--------KGLGNIMSRTRMIMLYAHANSLGRIVLGTSNRSE-----------FLTGY----FTKWGDG 146 (257)
T ss_dssp HHHHHCSCCCH--------HHHHHHHHHHHHHHHHHHHHHHTCEEECCCCHHH-----------HHHTC----SCTTSTT
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCH-----------HHEEC----CCCCCCC
T ss_conf 99986455667--------7788789888689999998863977944787342-----------32013----5556754
Q ss_pred EEEEEEECCCCHHHHHHHHHHHCCCH
Q ss_conf 16775313898899999999828200
Q gi|254781031|r 166 VTVHTPLMWLKKYETWKLAQDIGGQD 191 (240)
Q Consensus 166 ~~i~~P~~~~tK~eI~~~~~~~~~~~ 191 (240)
...+.|+.+++|.||.++++.+|.+.
T Consensus 147 ~~~~~Pl~dL~K~eVr~La~~Lglp~ 172 (257)
T 2e18_A 147 ASDYAPIINLYKTEVWEIAKRIGVPE 172 (257)
T ss_dssp CSSBCTTTTSCHHHHHHHHHHHTCCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCH
T ss_conf 57765456884999999999849996
No 23
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei 1710B}
Probab=98.53 E-value=1e-07 Score=65.58 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=25.9
Q ss_pred CCCCEEEEEECCHHHHHHHHHHH-------HCCCEEEEEEEEC
Q ss_conf 59948999809656999999999-------7498399999767
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWAL-------DRFDRVETLSFDY 42 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~-------~~~~~v~~i~~~y 42 (240)
-.+++|+-+|||+||+++|+++. ..|..+..+.+..
T Consensus 45 g~k~vVvGlSGGVDSaV~A~L~~~a~g~~~~~g~~~~~v~~~~ 87 (285)
T 3dpi_A 45 GLRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRL 87 (285)
T ss_dssp TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 9996999788889999999999999887346776637999847
No 24
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=98.51 E-value=1.5e-06 Score=58.30 Aligned_cols=156 Identities=9% Similarity=-0.071 Sum_probs=77.9
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf 59948999809656999999999749839999976778877727999999999999988875203561587501103224
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS 86 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (240)
..++.++++|||.||++++.++.+.+.++..||+|.|.-.+-..+....+. ..+ .....++. .......
T Consensus 44 ~~~~~~vs~SgGkDS~VlLhL~~k~~~~~~vvfvDTg~efpET~~~~~~~~-------~~~---~l~i~v~~-~~~~~~~ 112 (252)
T 2o8v_A 44 LPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELT-------DKL---KLNLKVYR-ATESAAW 112 (252)
T ss_dssp SCSCEEEECCCSTTHHHHHHHHHHHSTTCEEEECCCSCBCHHHHHHHHHHH-------HHT---TCEEEECC-CSSCHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH-------HHH---CCCEEEEC-CCCHHHH
T ss_conf 699889994687799999999996189986799768999999999999999-------973---98627966-8711688
Q ss_pred CCCCCCCHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 4433222011000123310-111111122333777777433993651145444434555443024777776775306432
Q gi|254781031|r 87 HSSLTKNVAMKIQDNNLPN-TFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESH 165 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (240)
. ............... .....+. .....-.....+......|..+.+.. .+...+.+ ....+
T Consensus 113 ~---~~~~~~~~~~~~~~~~~cc~~~K---~~p~~~~l~~~~~~~~i~G~R~~Es~-~Ra~~~~~----------~~~~~ 175 (252)
T 2o8v_A 113 Q---EARYGKLWEQGVEGIEKYNDINK---VEPMNRALKELNAQTWFAGLRREQSG-SRANLPVL----------AIQRG 175 (252)
T ss_dssp H---HHHTCCGGGSHHHHHHHHHHHHT---HHHHHHHHHHTTCSEEEECCCSTTTT-CCTTSCSE----------EESSS
T ss_pred H---HHHCCCCCCCCCCHHHHHHHHHH---HHHHHHHHHHCCCCEECCCCEECCCC-CCCCCCCE----------ECCCC
T ss_conf 8---73516766678506778645775---51499998632850001374017862-20148634----------31599
Q ss_pred EEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 1677531389889999999982820
Q gi|254781031|r 166 VTVHTPLMWLKKYETWKLAQDIGGQ 190 (240)
Q Consensus 166 ~~i~~P~~~~tK~eI~~~~~~~~~~ 190 (240)
...++|++++|..+|+....+.+.+
T Consensus 176 ~~kv~PI~~Wt~~DVw~Yi~~~~lp 200 (252)
T 2o8v_A 176 VFKVLPIIDWDNRTIYQYLQKHGLK 200 (252)
T ss_dssp SEEECGGGSCCHHHHHHHHHHTTCC
T ss_pred CCCCCCHHHCCHHHHHHHHHHHCCC
T ss_conf 0130873769899999999980999
No 25
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=98.31 E-value=4.8e-06 Score=55.15 Aligned_cols=38 Identities=26% Similarity=0.247 Sum_probs=29.0
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHC-----------CCEEEEEEEECCCC
Q ss_conf 994899980965699999999974-----------98399999767788
Q gi|254781031|r 8 APSALLLFSGGQDSSTCLSWALDR-----------FDRVETLSFDYGQR 45 (240)
Q Consensus 8 ~~~av~l~SGGlDS~~~l~~l~~~-----------~~~v~~i~~~ygq~ 45 (240)
.+++|+-+|||+||+++|+++.+. +..+.++..-++..
T Consensus 40 ~k~vVlGLSGGVDSaV~A~L~~~Alg~~~v~~~~~~~~~~~v~mP~~~~ 88 (275)
T 1wxi_A 40 IKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQ 88 (275)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 8859997888788999999999999988763155553189997898676
No 26
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=98.30 E-value=1.3e-06 Score=58.64 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=36.1
Q ss_pred CHHHCCCCCEEEEEECCHHHHHHHHHHHHC----CCEEEEEEEECCCCCC
Q ss_conf 122135994899980965699999999974----9839999976778877
Q gi|254781031|r 2 NDIIKKAPSALLLFSGGQDSSTCLSWALDR----FDRVETLSFDYGQRNK 47 (240)
Q Consensus 2 ~~~~~~~~~av~l~SGGlDS~~~l~~l~~~----~~~v~~i~~~ygq~~~ 47 (240)
++.....++.|++||||.||+++|+++.+. +..+..||+|.|...+
T Consensus 40 Re~~~~f~~~vv~fSGGKDStVlLhLa~ka~~~~~~p~pvl~iDTg~~Fp 89 (325)
T 1zun_A 40 REVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQ 89 (325)
T ss_dssp HHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCH
T ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH
T ss_conf 99999759979995475899999999999734248983589954898629
No 27
>1kqp_A NAD+ synthase;, NH(3)-dependent NAD(+) synthetase; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=98.27 E-value=6.9e-06 Score=54.22 Aligned_cols=155 Identities=14% Similarity=0.044 Sum_probs=69.7
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHC---------CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 5994899980965699999999974---------9839999976778877727999999999999988875203561587
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDR---------FDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHIL 77 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~---------~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (240)
..+++|+-+|||+||+++|+++.+. ...++++..-++.. ...+.+...++.+. ......+
T Consensus 37 g~~~vVvGlSGGIDSav~A~L~~~a~~~~~~~~g~~~v~~v~mp~~~~--~~~~da~~~~~~~~---------~~~~~~i 105 (271)
T 1kqp_A 37 GAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQ--QDEDDAQLALKFIK---------PDKSWKF 105 (271)
T ss_dssp TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSSSC--TTHHHHHHHHHHHC---------CSEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC--CCHHHHHHHHHHHC---------CCCEEEE
T ss_conf 898199979888889999999999999887606885799984687676--56999999998607---------6651686
Q ss_pred ECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 50110322444332220110001233101111111223337777774339936511454444345554430247777767
Q gi|254781031|r 78 PLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETA 157 (240)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (240)
++...-.......... ..........-.....+.......++...|...+.++-..+...++-..
T Consensus 106 ~I~~~~~~~~~~~~~~----~~~~~~~~~~~NiqaRiR~~~Ly~~An~~g~lvlgTgNksE~~~Gy~Tk----------- 170 (271)
T 1kqp_A 106 DIKSTVSAFSDQYQQE----TGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHAAEAVTGFFTK----------- 170 (271)
T ss_dssp CCHHHHHHHHHHHHHH----HSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCHHHHTTTCSCT-----------
T ss_pred CCHHHHHHHHHHHHHH----CCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEE-----------
T ss_conf 4088886766531121----0234321445254214455899876643696698389710201001677-----------
Q ss_pred HHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCH
Q ss_conf 7530643216775313898899999999828200
Q gi|254781031|r 158 INLGMESHVTVHTPLMWLKKYETWKLAQDIGGQD 191 (240)
Q Consensus 158 ~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~ 191 (240)
.+....-++|...++|.||.++++.+|.+.
T Consensus 171 ----yGD~~~di~Pi~~L~K~eV~~la~~lgiP~ 200 (271)
T 1kqp_A 171 ----YGDGGADLLPLTGLTKRQGRTLLKELGAPE 200 (271)
T ss_dssp ----TTTTCCSBCTTTTCCHHHHHHHHHHTTCCT
T ss_pred ----CCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
T ss_conf ----587874513233577899999999839987
No 28
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=98.19 E-value=1.7e-05 Score=51.78 Aligned_cols=153 Identities=9% Similarity=-0.035 Sum_probs=74.1
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCC
Q ss_conf 99489998096569999999997498399999767788777279999999999999888752035615875011032244
Q gi|254781031|r 8 APSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISH 87 (240)
Q Consensus 8 ~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (240)
.+++++.+|||.||++++.++.+-+.++..+|+|.|.-.+-..+... ++. ... ....+++.... ....
T Consensus 44 ~~~~~vs~S~GkDS~Vll~L~~~~~~~~~vvf~DTg~~fpET~~~~~----~~~---~~~---~l~~~~~~~~~-~~~~- 111 (215)
T 1sur_A 44 PGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFID----ELT---DKL---KLNLKVYRATE-SAAW- 111 (215)
T ss_dssp CSEEEEECCCCTTHHHHHHHHHHHSTTCEEEEEECSCBCHHHHHHHH----HHH---HHT---TCEEEEEECSS-CHHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH----HHH---HHH---CCEEEEEECCC-HHHH-
T ss_conf 99889995587579999999971499951899638999899999999----999---984---98059996241-1798-
Q ss_pred CCCCCCHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 43322201100012331--0111111122333777777433993651145444434555443024777776775306432
Q gi|254781031|r 88 SSLTKNVAMKIQDNNLP--NTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESH 165 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (240)
.............. ......+.. .-........+......|....+.. .+...+.+. ...+
T Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~K~---~p~~~~l~~~~~~~~i~G~R~~es~-~Ra~~~~~~----------~~~~ 174 (215)
T 1sur_A 112 ---QEARYGKLWEQGVEGIEKYNDINKV---EPMNRALKELNAQTWFAGLRREQSG-SRANLPVLA----------IQRG 174 (215)
T ss_dssp ---HHHHHCCGGGSHHHHHHHHHHHHTH---HHHHHHHHHTTEEEEECCCCTTSSS-TTTTCCSEE----------EETT
T ss_pred ---HHHHCCCCCCCCCCHHHHCCCCHHH---HHHHHHHHCCCCEEECCCCCCCCCH-HHHCCCCEE----------ECCC
T ss_conf ---8865177666784022331552314---0799998515862641566126733-465187453----------0599
Q ss_pred EEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 167753138988999999998282
Q gi|254781031|r 166 VTVHTPLMWLKKYETWKLAQDIGG 189 (240)
Q Consensus 166 ~~i~~P~~~~tK~eI~~~~~~~~~ 189 (240)
...++|++++|+.+|+....+.+.
T Consensus 175 ~~ki~Pi~~Wt~~DVw~Yi~~~~l 198 (215)
T 1sur_A 175 VFKVLPIIDWDNRTIYQYLQKHGL 198 (215)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHTC
T ss_pred EEEEECHHHCCHHHHHHHHHHCCC
T ss_conf 799957286999999999998199
No 29
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=97.85 E-value=7.1e-05 Score=47.90 Aligned_cols=164 Identities=10% Similarity=-0.044 Sum_probs=76.9
Q ss_pred HCCCCCEEEEEECCHHHHHHHHHHHHCC---CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCEEEECH
Q ss_conf 1359948999809656999999999749---8399999767788777279999999999999888752035-61587501
Q gi|254781031|r 5 IKKAPSALLLFSGGQDSSTCLSWALDRF---DRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLG-EDHILPLA 80 (240)
Q Consensus 5 ~~~~~~av~l~SGGlDS~~~l~~l~~~~---~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (240)
+...++.++.+|||.||++++.++.+-. ..+..|++|.|.-.+-+.+....+.++ +..... ..+.....
T Consensus 38 ~~~~~~~~~~~SfGkdS~VlLhL~~~v~~~~~~~~VvfiDTG~efpET~e~ve~l~~~-------~~~~~~~~~~~~~~~ 110 (261)
T 2oq2_A 38 IVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKK-------YYQPKNQTIHVYKPD 110 (261)
T ss_dssp HHHCSSEEEECCCCHHHHHHHHHHHHHTTTSCCCEEEEECCSCBCHHHHHHHHHHHHH-------HTGGGTCCCEEECST
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-------HCCCCCCCCEEECCC
T ss_conf 9978991899868788999999999856667888679955999889999999999999-------586544343144575
Q ss_pred HHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 10322444332220110001233101111111223337777774339936511454444345554430247777767753
Q gi|254781031|r 81 ILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINL 160 (240)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (240)
. ..... ............. ........+....+. ......++.....|...++... +...+.+ ..
T Consensus 111 ~-~~~~~-~~~~~~~~~~~~~-~~~~cc~~~Kv~Pl~---r~l~~~~~~~~i~GiR~~es~~-R~~~~~~--------~~ 175 (261)
T 2oq2_A 111 G-CESEA-DFASKYGDFLWEK-DDDKYDYLAKVEPAH---RAYKELHISAVFTGRRKSQGSA-RSQLSII--------EI 175 (261)
T ss_dssp T-CSSHH-HHHHHHCTTHHHH-CHHHHHHHHTHHHHH---HHHHHTTCSEEECCCCGGGCGG-GGGCCSE--------EE
T ss_pred H-HHHHH-HHHHHCCCCCCCC-CHHHHHHHHHCCHHH---HHHHHCCCCEEEECCCCCCCCC-CCCCCCE--------EE
T ss_conf 5-66799-9986148764446-889876676105478---9998518874775102046131-3357510--------14
Q ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 064321677531389889999999982820
Q gi|254781031|r 161 GMESHVTVHTPLMWLKKYETWKLAQDIGGQ 190 (240)
Q Consensus 161 ~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~ 190 (240)
....+...++|++++|..+|+....+.+.+
T Consensus 176 ~~~~~~~~v~Pi~~Wt~~dVw~Yi~~~~lp 205 (261)
T 2oq2_A 176 DELNGILKINPLINWTFEQVKQYIDANNVP 205 (261)
T ss_dssp ETTTTEEEECTTTTCCHHHHHHHHHHHTCC
T ss_pred CCCCCCEEECHHHCCCHHHHHHHHHHCCCC
T ss_conf 378994466234409999999999983999
No 30
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=97.63 E-value=0.00011 Score=46.70 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=32.3
Q ss_pred CCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 9936511454444345554430247777767753064321677531389889999999982820
Q gi|254781031|r 127 GITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQ 190 (240)
Q Consensus 127 g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~ 190 (240)
+...+..|..+.+.... ...++.. ... .+.++-.++|.+++|..+|+......+.+
T Consensus 160 ~~~aii~G~R~~Es~~R-~~~~~~~------~~~-~~p~~~rv~PI~dWt~~DVW~Yi~~~~lp 215 (308)
T 3fwk_A 160 ETKAIVIGIRHTDPFGE-HLKPIQK------TDA-NWPDFYRLQPLLHWNLANIWSFLLYSNEP 215 (308)
T ss_dssp TCCEEECCCCTTSTTCT-TCCSEEE------CCT-TSCSCEEECTTTTCCHHHHHHHHHHHTCC
T ss_pred CCCEEEECCCCCCCHHH-HCCCCCC------CCC-CCCCEEEEEEHHHCCHHHHHHHHHHCCCC
T ss_conf 97278603500470145-3284115------579-99872898203648999999999984999
No 31
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic acid, AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=97.56 E-value=0.00012 Score=46.54 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=36.1
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 59948999809656999999999749839999976778877727999999999
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKK 59 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~ 59 (240)
......++||||+||++++.++.+.+..+.++++.+.. ..+.+.+..+++.
T Consensus 240 sd~~vg~~LSGGlDSSlIaala~k~~~~~~t~s~~~~~--~dE~~~A~~vA~~ 290 (513)
T 1jgt_A 240 PGDTPLVVLSGGIDSSGVAACAHRAAGELDTVSMGTDT--SNEFREARAVVDH 290 (513)
T ss_dssp TTCCCEEECCSSHHHHHHHHHHHHHHSSCEEEEEECSS--CCCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCC--CCHHHHHHHHHHC
T ss_conf 78887697789834499999876412443257424545--6526677764210
No 32
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=97.56 E-value=0.00017 Score=45.55 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=34.5
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 5994899980965699999999974983999997677887772799999999
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRK 58 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~ 58 (240)
.....-++||||+||++++.++.+.+.++.+.++.+-. ..+.+.+..+++
T Consensus 237 sd~pvg~~LSGGlDSSlIaala~~~~~~i~tfs~g~~~--~de~~~A~~vA~ 286 (503)
T 1q15_A 237 RFDTVGIPLSGGLDSSLVTALASRHFKKLNTYSIGTEL--SNEFEFSQQVAD 286 (503)
T ss_dssp GCSEEEEECCSSHHHHHHHHHHTTTCSEEEEEEEEETT--BCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCC--CCHHHHHHHHHH
T ss_conf 89856898058742799999987513530110157767--765799999999
No 33
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00097 Score=40.88 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=33.3
Q ss_pred CCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 993651145444434555443024777776775306432167753138988999999998282
Q gi|254781031|r 127 GITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQDIGG 189 (240)
Q Consensus 127 g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~ 189 (240)
+...++.|..+.+... +...++.. .. ..+.++-.++|.+++|-.+||......+.
T Consensus 157 ~~~aii~G~R~~Es~~-R~~~~~~~------~d-~~~p~~~rv~PI~dWt~~DVW~yi~~~~l 211 (306)
T 2wsi_A 157 ETEAIVIGIRHTDPFG-EALKPIQR------TD-SNWPDFMRLQPLLHWDLTNIWSFLLYSNE 211 (306)
T ss_dssp TCCEEECCCCCCSSSC-CCCCSEEE------CC-TTSCSCEEECTTTTCCHHHHHHHHHHHCC
T ss_pred CCCEEEECCCCCCCCH-HCCCCCCC------CC-CCCCCEEEECCHHHCCHHHHHHHHHHCCC
T ss_conf 9868996240467540-01585002------05-99886389822363999999999997299
No 34
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=97.50 E-value=0.0003 Score=44.01 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=31.5
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCC
Q ss_conf 9948999809656999999999749839999976778877
Q gi|254781031|r 8 APSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNK 47 (240)
Q Consensus 8 ~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~ 47 (240)
.+++++.||||-|| +++.++.+.+.++..|++|.|.-.+
T Consensus 54 ~~~i~vSfSGGKDs-VlL~L~~~~~~~i~Vvf~DTG~efp 92 (275)
T 2goy_A 54 GDELWISFSGAEDV-VLVDMAWKLNRNVKVFSLDTGRLHP 92 (275)
T ss_dssp STTEEEECCSSTTH-HHHHHHHHHCTTCCEEEECCSCCCH
T ss_pred CCCEEEECCCHHHH-HHHHHHHHHCCCCCEEEECCCCCCH
T ss_conf 99889981586999-9999999858997189835899989
No 35
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=97.39 E-value=0.00052 Score=42.56 Aligned_cols=36 Identities=31% Similarity=0.227 Sum_probs=29.0
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHC-C-CEEEEEEEECC
Q ss_conf 994899980965699999999974-9-83999997677
Q gi|254781031|r 8 APSALLLFSGGQDSSTCLSWALDR-F-DRVETLSFDYG 43 (240)
Q Consensus 8 ~~~av~l~SGGlDS~~~l~~l~~~-~-~~v~~i~~~yg 43 (240)
.+++|+-+|||+||+++|.++.+. | ..|+++..-..
T Consensus 326 ~~~~v~glSGGiDSal~a~la~~alg~~~v~~~~mP~~ 363 (590)
T 3n05_A 326 FRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSK 363 (590)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 98699963799328999999998518865113546866
No 36
>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} SCOP: c.26.2.1 PDB: 3h7e_A* 1ru8_A
Probab=97.31 E-value=0.00028 Score=44.21 Aligned_cols=130 Identities=20% Similarity=0.152 Sum_probs=66.7
Q ss_pred CCEEEEEECCHHHHHHHHHHHHCCCEEEE-EEEECCCC-----CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH
Q ss_conf 94899980965699999999974983999-99767788-----7772799999999999998887520356158750110
Q gi|254781031|r 9 PSALLLFSGGQDSSTCLSWALDRFDRVET-LSFDYGQR-----NKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAIL 82 (240)
Q Consensus 9 ~~av~l~SGGlDS~~~l~~l~~~~~~v~~-i~~~ygq~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (240)
.++++|||||.||+..+|++++.|++|.. +|+..... |....+....+++. -..+...+....
T Consensus 5 ~~v~vl~SGGKDS~lAl~~a~~~G~~v~~L~t~~~~~~~s~~~h~~~~~ll~~qA~a----------lgiPL~~~~~~~- 73 (227)
T 2d13_A 5 ADVAVLYSGGKDSNYALYWALKSGLRVRYLVSMVSENEESYMYHTPNVELTSLQARA----------LGIPIIKGFTKG- 73 (227)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEEECCC---------CCTTHHHHHHH----------HTCCEEEEEC---
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCEECCCCCHHHHHHHHHH----------CCCCEEEEECCC-
T ss_conf 649999368699999999999869927999997438888141557789999999997----------599717874678-
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 32244433222011000123310111111122333777777433993651145444434555443024777776775306
Q gi|254781031|r 83 GDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGM 162 (240)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (240)
... ..... ........+++.+..|...... +..+... . ..
T Consensus 74 ----------~~e---------~~~~~---------l~~~l~~~~v~~iv~Gdi~~~~------~~~~~e~---~---~~ 113 (227)
T 2d13_A 74 ----------EKE---------KEVED---------LKNVLEGLKVDGIVAGALASRY------QKERIEN---V---AR 113 (227)
T ss_dssp ----------CTT---------SHHHH---------HHHHHHTBCCSEEECCCSSCHH------HHHHHHH---H---HH
T ss_pred ----------CHH---------HHHHH---------HHHHHHHHCCCEEEEEEEEEHH------HHHHHHH---H---HH
T ss_conf ----------615---------89999---------9999997175607862376288------9999999---9---98
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 432167753138988999999998282
Q gi|254781031|r 163 ESHVTVHTPLMWLKKYETWKLAQDIGG 189 (240)
Q Consensus 163 ~~~~~i~~P~~~~tK~eI~~~~~~~~~ 189 (240)
..++..+.|+...+-.++++...+.|.
T Consensus 114 ~~gl~~~~PLW~~d~~~ll~e~i~~G~ 140 (227)
T 2d13_A 114 ELGLKVYTPAWEKDPYQYMLEIIKLGF 140 (227)
T ss_dssp HHTCEEECTTTTCCHHHHHHHHHHTTC
T ss_pred HCCCEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 749888733248877999999998799
No 37
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=96.95 E-value=0.0011 Score=40.46 Aligned_cols=25 Identities=28% Similarity=0.173 Sum_probs=19.5
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 9948999809656999999999749
Q gi|254781031|r 8 APSALLLFSGGQDSSTCLSWALDRF 32 (240)
Q Consensus 8 ~~~av~l~SGGlDS~~~l~~l~~~~ 32 (240)
....-++|||||||++++.++.+..
T Consensus 226 dvpvg~~LSGGlDSSlIaal~~k~~ 250 (553)
T 1ct9_A 226 DVPYGVLLSGGLDSSIISAITKKYA 250 (553)
T ss_dssp SSCEEEECCSSHHHHHHHHHHHHHC
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 8751477369974399999999863
No 38
>3dla_A Glutamine-dependent NAD(+) synthetase; glutaminase, ammonia tunneling, enzyme, glutamine-amido transferase, ATP-binding, ligase; HET: NXX ONL; 2.35A {Mycobacterium tuberculosis}
Probab=96.95 E-value=0.0025 Score=38.32 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=29.6
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHC----C---CEEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 994899980965699999999974----9---8399999767788777279999999
Q gi|254781031|r 8 APSALLLFSGGQDSSTCLSWALDR----F---DRVETLSFDYGQRNKVELECRLCVR 57 (240)
Q Consensus 8 ~~~av~l~SGGlDS~~~l~~l~~~----~---~~v~~i~~~ygq~~~~~~~~a~~~~ 57 (240)
.+++|+-+|||+||++++..+... + ..|+++..-.-+......+.+...+
T Consensus 361 ~~~~vlglSGGiDSal~a~la~~a~~~~~~~~~~v~~~~mps~~ss~~s~~~A~~la 417 (680)
T 3dla_A 361 YPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALPGFATGEHTKNNAIKLA 417 (680)
T ss_dssp SCEEEEECCSSHHHHHHHHHHHHHHHHTTCCGGGEEEEECCC-----CTHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 872552233575317889999997632047754448983264446503399999888
No 39
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=95.12 E-value=0.036 Score=31.18 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=18.5
Q ss_pred CCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 59948999809656999999999
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWAL 29 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~ 29 (240)
..+++|+-+|||+||++++.++.
T Consensus 302 ~~~~~vlglSGGiDSal~a~la~ 324 (634)
T 3ilv_A 302 RSKGFVLSLSGGADSSACAIMVA 324 (634)
T ss_dssp TCCSEEEECCSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 47776767862055769999999
No 40
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=63.84 E-value=6.1 Score=17.32 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=32.5
Q ss_pred CCHHHCCCCCE-EEEEECCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 91221359948-999809656999999999749839999
Q gi|254781031|r 1 MNDIIKKAPSA-LLLFSGGQDSSTCLSWALDRFDRVETL 38 (240)
Q Consensus 1 ~~~~~~~~~~a-v~l~SGGlDS~~~l~~l~~~~~~v~~i 38 (240)
|+.|.+++++. |+..=||+==+++||.|.++|.+|..|
T Consensus 8 ~~~~~~m~~~~DvvIIGaGi~Gls~A~~La~~G~~V~li 46 (382)
T 1ryi_A 8 MARIRAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALF 46 (382)
T ss_dssp ------CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 446875387589999993299999999999789938999
No 41
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=63.11 E-value=6.3 Score=17.24 Aligned_cols=35 Identities=9% Similarity=0.073 Sum_probs=30.1
Q ss_pred HHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 213599489998096569999999997498399999
Q gi|254781031|r 4 IIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLS 39 (240)
Q Consensus 4 ~~~~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~ 39 (240)
||+..++++ ..=||+==+.+||.|.++|.+|..+=
T Consensus 2 m~~~~~~V~-IIGaGi~G~s~A~~La~~G~~V~vlE 36 (363)
T 1c0p_A 2 MMHSQKRVV-VLGSGVIGLSSALILARKGYSVHILA 36 (363)
T ss_dssp CCCCSCEEE-EECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEE-EECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 989999899-98958999999999997899389992
No 42
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis F11}
Probab=50.48 E-value=10 Score=15.93 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=6.2
Q ss_pred CCCHHHHHHHHHHHC
Q ss_conf 898899999999828
Q gi|254781031|r 174 WLKKYETWKLAQDIG 188 (240)
Q Consensus 174 ~~tK~eI~~~~~~~~ 188 (240)
+..-..+.+...++|
T Consensus 90 G~rS~~aa~~L~~~G 104 (148)
T 2fsx_A 90 GNRSIGAAEVATEAG 104 (148)
T ss_dssp SSTHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 879999999999849
No 43
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=48.29 E-value=11 Score=15.72 Aligned_cols=38 Identities=18% Similarity=0.003 Sum_probs=21.5
Q ss_pred HHHCCCCCEEEEEECCHHHHHHHHHHHHCC---CEEEEEEEE
Q ss_conf 221359948999809656999999999749---839999976
Q gi|254781031|r 3 DIIKKAPSALLLFSGGQDSSTCLSWALDRF---DRVETLSFD 41 (240)
Q Consensus 3 ~~~~~~~~av~l~SGGlDS~~~l~~l~~~~---~~v~~i~~~ 41 (240)
-+.+.+.|.++|+||+ -|...+..-...+ .++.+|..|
T Consensus 7 ~~~~~p~riavl~SG~-Gsnl~aLi~~~~~~~~~~iv~vi~~ 47 (215)
T 3da8_A 7 VPPSAPARLVVLASGT-GSLLRSLLDAAVGDYPARVVAVGVD 47 (215)
T ss_dssp ECCCSSEEEEEEESSC-CHHHHHHHHHSSTTCSEEEEEEEES
T ss_pred CCCCCCCEEEEEECCC-CHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 8999988899998368-2659999996377999779999967
No 44
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=46.15 E-value=7.9 Score=16.63 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=28.7
Q ss_pred CHHHCCCCCEEEEEECCHHHHHHHHHHHHC-C---CEEEEEEEEC
Q ss_conf 122135994899980965699999999974-9---8399999767
Q gi|254781031|r 2 NDIIKKAPSALLLFSGGQDSSTCLSWALDR-F---DRVETLSFDY 42 (240)
Q Consensus 2 ~~~~~~~~~av~l~SGGlDS~~~l~~l~~~-~---~~v~~i~~~y 42 (240)
.+.++.++++.+.+||| .|...+|..+.+ . .+++....|.
T Consensus 38 ~~~l~~~~~~~i~lsGG-stp~~~y~~L~~~~~~w~~v~~~~~DE 81 (232)
T 1vl1_A 38 EKLLEEKDKIFVVLAGG-RTPLPVYEKLAEQKFPWNRIHFFLSDE 81 (232)
T ss_dssp HHHHHHCSCEEEEECCS-TTHHHHHHHHTTSCCCGGGEEEEESEE
T ss_pred HHHHHHCCCEEEEECCC-HHHHHHHHHHHHCCCCHHHEEEEECCE
T ss_conf 99998779989998998-249999999985599813369994646
No 45
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=43.04 E-value=13 Score=15.22 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=28.9
Q ss_pred CCHHHCCCCCE------------EEEEECCHHHHHHHHHHHHCC--CEEEEE
Q ss_conf 91221359948------------999809656999999999749--839999
Q gi|254781031|r 1 MNDIIKKAPSA------------LLLFSGGQDSSTCLSWALDRF--DRVETL 38 (240)
Q Consensus 1 ~~~~~~~~~~a------------v~l~SGGlDS~~~l~~l~~~~--~~v~~i 38 (240)
|.|||.+++.. |+..=||+=-+..||.|.+++ .+|..|
T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~yDvvIIGaGi~G~s~A~~Lak~g~~~~V~vl 52 (405)
T 2gag_B 1 MADLLPEHPEFLWANPEPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVL 52 (405)
T ss_dssp --CCCCCCCSCCCCCCCCCSEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9766899986667898878888899989379999999999966987869998
No 46
>3lwd_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.75A {Chromohalobacter salexigens}
Probab=42.62 E-value=14 Score=15.18 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=28.1
Q ss_pred CHHHCCCCCEEEEEECCHHHHHHHHHHHHC-C---CEEEEEEEEC
Q ss_conf 122135994899980965699999999974-9---8399999767
Q gi|254781031|r 2 NDIIKKAPSALLLFSGGQDSSTCLSWALDR-F---DRVETLSFDY 42 (240)
Q Consensus 2 ~~~~~~~~~av~l~SGGlDS~~~l~~l~~~-~---~~v~~i~~~y 42 (240)
++.+++++++++.+||| .|...+|..+.+ . .+++....|-
T Consensus 26 ~~~i~~~~~~~l~lsGG-~tp~~~y~~L~~~~l~w~~v~~~~~DE 69 (226)
T 3lwd_A 26 EADLAKRERALLVVSGG-STPKPFFTSLAAKALPWARVDVTLADE 69 (226)
T ss_dssp HHHHTTSSCEEEEECCS-STTHHHHHHHHTSCSCGGGEEEEESEE
T ss_pred HHHHHHCCCEEEEECCC-HHHHHHHHHHHHCCCCCHHEEEEEEEE
T ss_conf 99998669989997797-679999999986169805626885036
No 47
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein structure initiative, berkeley structural genomics center, BSGC, transferase; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=41.87 E-value=13 Score=15.36 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=21.4
Q ss_pred CCHHHCCCCCEEEEEECCHHHHHHH---HH----HHHCCCEEEEEEE
Q ss_conf 9122135994899980965699999---99----9974983999997
Q gi|254781031|r 1 MNDIIKKAPSALLLFSGGQDSSTCL---SW----ALDRFDRVETLSF 40 (240)
Q Consensus 1 ~~~~~~~~~~av~l~SGGlDS~~~l---~~----l~~~~~~v~~i~~ 40 (240)
|+|+||+ .+++++++..+...+ +. +...+.+|-.++.
T Consensus 1 ~~~~mkk---~l~ii~~~Py~~~~a~eal~~A~a~~a~~~~V~vff~ 44 (136)
T 2hy5_B 1 MSEVVKK---FMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFL 44 (136)
T ss_dssp ----CCE---EEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEEC
T ss_pred CCHHHCE---EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9365237---8999778999867899999999999847997799993
No 48
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, disulfide oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=40.60 E-value=15 Score=14.98 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=31.5
Q ss_pred CCHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 912213599489998096569999999997498399999
Q gi|254781031|r 1 MNDIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLS 39 (240)
Q Consensus 1 ~~~~~~~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~ 39 (240)
||+|.+.+.+.| ..=||.=-..+|..|.+.|.++..+-
T Consensus 1 ~~~m~~~~~dVv-IIGgGpAGlsAA~~la~~g~~v~lie 38 (333)
T 1vdc_A 1 MNGLETHNTRLC-IVGSGPAAHTAAIYAARAELKPLLFE 38 (333)
T ss_dssp ---CEEEEEEEE-EECCSHHHHHHHHHHHHTTCCCEEEC
T ss_pred CCCCCCCCCCEE-EECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 998762499899-99975999999999997899889994
No 49
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=40.20 E-value=15 Score=14.94 Aligned_cols=34 Identities=6% Similarity=0.131 Sum_probs=27.3
Q ss_pred HCCCCCEEEEEECCHHHHHHHHHHHHC------CCEEEEE
Q ss_conf 135994899980965699999999974------9839999
Q gi|254781031|r 5 IKKAPSALLLFSGGQDSSTCLSWALDR------FDRVETL 38 (240)
Q Consensus 5 ~~~~~~av~l~SGGlDS~~~l~~l~~~------~~~v~~i 38 (240)
|+..+|-|+..=||+=-+++|+.|.+. |++|..+
T Consensus 1 m~~~~k~V~IIGaGiaGL~aA~~L~~~~~~~~~G~~V~vl 40 (470)
T 3i6d_A 1 MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLV 40 (470)
T ss_dssp ----CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 9899973999898789999999998647444799848999
No 50
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1* 3m9s_1*
Probab=34.37 E-value=9.7 Score=16.09 Aligned_cols=11 Identities=27% Similarity=0.915 Sum_probs=9.4
Q ss_pred CCCCCHHHHHH
Q ss_conf 99868778999
Q gi|254781031|r 217 GCNSCPACYLR 227 (240)
Q Consensus 217 hCG~C~~C~~R 227 (240)
.||+|.+|.+=
T Consensus 352 SCgqC~pCr~G 362 (438)
T 3i9v_1 352 SCGKCTPCREG 362 (438)
T ss_dssp CCSCCHHHHTT
T ss_pred CCCCCCCCHHH
T ss_conf 78999584888
No 51
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=33.62 E-value=18 Score=14.36 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=27.2
Q ss_pred HHHCCCCCEEEEEECCHHHHHHHHHHHHC-C---CEEEEEEEEC
Q ss_conf 22135994899980965699999999974-9---8399999767
Q gi|254781031|r 3 DIIKKAPSALLLFSGGQDSSTCLSWALDR-F---DRVETLSFDY 42 (240)
Q Consensus 3 ~~~~~~~~av~l~SGGlDS~~~l~~l~~~-~---~~v~~i~~~y 42 (240)
+.++.++.+.+.+||| .|...+|.++.+ . .+++....|.
T Consensus 31 ~~i~~~~~~~l~lsGG-stp~~ly~~L~~~~i~w~~v~~~~~DE 73 (233)
T 3nwp_A 31 EAVDARGKASLVVSGG-STPLKLFQLLSMKSIDWSDVYITLADE 73 (233)
T ss_dssp HHHHHHSCEEEEECCS-STTHHHHHHHHHCCSCGGGEEEEESEE
T ss_pred HHHHHCCCEEEEECCC-CCHHHHHHHHHHHCCCCHHCEEEEEEE
T ss_conf 9998679889997688-219999999873448924354873147
No 52
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=31.14 E-value=14 Score=15.08 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=6.7
Q ss_pred CCCCCCCHHHHH
Q ss_conf 889986877899
Q gi|254781031|r 215 GYGCNSCPACYL 226 (240)
Q Consensus 215 ~~hCG~C~~C~~ 226 (240)
..|||+|.|=+.
T Consensus 97 a~QCGyCtPG~v 108 (161)
T 1rm6_C 97 GTQCGFCTPGMI 108 (161)
T ss_dssp CCSSCSSHHHHH
T ss_pred CCCCCCCCHHHH
T ss_conf 998999846799
No 53
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=31.11 E-value=14 Score=15.07 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=6.8
Q ss_pred CCCCCCCHHHHH
Q ss_conf 889986877899
Q gi|254781031|r 215 GYGCNSCPACYL 226 (240)
Q Consensus 215 ~~hCG~C~~C~~ 226 (240)
..|||+|.|=+.
T Consensus 99 a~QCGyCtPG~v 110 (166)
T 1n62_A 99 GLQCGYCTPGMI 110 (166)
T ss_dssp CCSSCSSHHHHH
T ss_pred CCCCCCCCCHHH
T ss_conf 867888880589
No 54
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=30.84 E-value=21 Score=14.01 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=24.9
Q ss_pred HCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 1359948999809656999999999749839999
Q gi|254781031|r 5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETL 38 (240)
Q Consensus 5 ~~~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i 38 (240)
++..+.-|+.||||.=++.++--|++...++..|
T Consensus 6 ~~~~~p~Iv~l~GGtG~~~ll~gL~~~~~~lt~I 39 (341)
T 2p0y_A 6 FKTQRPKIVVIGGGTGLPVVLNGLRKQAVDITAV 39 (341)
T ss_dssp ----CCEEEEECCGGGHHHHHHHHHHSSSEEEEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 3568974999889613899999986489985999
No 55
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=30.01 E-value=15 Score=14.83 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=13.5
Q ss_pred HHHCCCCCEEEEEECCHHHHHH
Q ss_conf 2213599489998096569999
Q gi|254781031|r 3 DIIKKAPSALLLFSGGQDSSTC 24 (240)
Q Consensus 3 ~~~~~~~~av~l~SGGlDS~~~ 24 (240)
++.+.++.+. +++||-|=.+-
T Consensus 191 ~ll~~~p~a~-ivaGGTdl~~~ 211 (462)
T 2w3s_A 191 DWYLAHPEAT-LIAGGTDVSLW 211 (462)
T ss_dssp HHHHHCTTCE-EESSCTTTTHH
T ss_pred HHHHHCCCCE-EEECCCEEEEE
T ss_conf 9997699868-99457167632
No 56
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=28.19 E-value=18 Score=14.46 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=6.7
Q ss_pred CCCCCCCHHHHH
Q ss_conf 889986877899
Q gi|254781031|r 215 GYGCNSCPACYL 226 (240)
Q Consensus 215 ~~hCG~C~~C~~ 226 (240)
..|||+|.|=+.
T Consensus 104 a~QCGyCtPG~v 115 (168)
T 1t3q_A 104 ALQCGFCTAGML 115 (168)
T ss_dssp CCSSCSSHHHHH
T ss_pred CCCCCCCCHHHH
T ss_conf 984998868999
No 57
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=28.04 E-value=17 Score=14.54 Aligned_cols=10 Identities=20% Similarity=0.587 Sum_probs=4.8
Q ss_pred CCCCCCHHHH
Q ss_conf 8998687789
Q gi|254781031|r 216 YGCNSCPACY 225 (240)
Q Consensus 216 ~hCG~C~~C~ 225 (240)
.|||+|.|=+
T Consensus 99 ~QCGyCtPG~ 108 (160)
T 3hrd_D 99 VQCGYCTPGM 108 (160)
T ss_dssp CSSCSSHHHH
T ss_pred CCCCCCCHHH
T ss_conf 7278874359
No 58
>3nrz_A Xanthine dehydrogenase/oxidase; xanthine oxidase, hypoxanthine, substrate orientation, hydro oxidoreductase; HET: FAD MTE HPA; 1.80A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3eub_A*
Probab=27.94 E-value=17 Score=14.58 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=8.8
Q ss_pred CCCCCCCCHHHHH
Q ss_conf 6889986877899
Q gi|254781031|r 214 WGYGCNSCPACYL 226 (240)
Q Consensus 214 ~~~hCG~C~~C~~ 226 (240)
+..|||+|.|=+.
T Consensus 108 ~a~QCGfCtPG~v 120 (164)
T 3nrz_A 108 HGSQCGFCTPGIV 120 (164)
T ss_dssp TCCSSCTTHHHHH
T ss_pred CCCCCCCCCHHHH
T ss_conf 9981998736699
No 59
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=26.52 E-value=25 Score=13.54 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=23.4
Q ss_pred HHCCCCCEEEEEECCH---H--HHHHHHHHHHCCCEEEEEEE
Q ss_conf 2135994899980965---6--99999999974983999997
Q gi|254781031|r 4 IIKKAPSALLLFSGGQ---D--SSTCLSWALDRFDRVETLSF 40 (240)
Q Consensus 4 ~~~~~~~av~l~SGGl---D--S~~~l~~l~~~~~~v~~i~~ 40 (240)
||+..+|-|+..+||- = ..+++-.|.++|++|..++.
T Consensus 1 ~~~~~~kkili~t~GtGGHi~~a~ala~~L~~~g~eV~~i~~ 42 (364)
T 1f0k_A 1 MMSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGT 42 (364)
T ss_dssp ------CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 999999769998689799999999999999968898999983
No 60
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=25.38 E-value=26 Score=13.41 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=28.5
Q ss_pred HHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 21359948999809656999999999749839999
Q gi|254781031|r 4 IIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETL 38 (240)
Q Consensus 4 ~~~~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i 38 (240)
|.+..+.=|+..=||+=-+++|+.|.+.|++|..+
T Consensus 11 mp~~~~~~V~IIGaGiaGL~aA~~L~~~G~~V~vl 45 (478)
T 2ivd_A 11 MPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLL 45 (478)
T ss_dssp ------CCEEEECCBHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 88999999899898789999999998589988999
No 61
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=25.35 E-value=26 Score=13.41 Aligned_cols=40 Identities=13% Similarity=0.021 Sum_probs=25.1
Q ss_pred CHHHCCCCCEEEEEECCHHHHHHHHHHH-HC-------CCEEEEEEEEC
Q ss_conf 1221359948999809656999999999-74-------98399999767
Q gi|254781031|r 2 NDIIKKAPSALLLFSGGQDSSTCLSWAL-DR-------FDRVETLSFDY 42 (240)
Q Consensus 2 ~~~~~~~~~av~l~SGGlDS~~~l~~l~-~~-------~~~v~~i~~~y 42 (240)
++.+++++++.+.+||| -|...+|..+ +. -.+|+....|.
T Consensus 29 ~~~~~~~~~~~i~lsGG-~tp~~~y~~L~~~~~~~~~~~~~v~~~~~DE 76 (266)
T 3eb9_A 29 EASGSQQWPLSIALAGG-STPKMTYARLHDEHLNLLREKRALRFFMGDE 76 (266)
T ss_dssp HHHCGGGCSEEEEECCS-HHHHHHHHHHHHHHHHHHTTSCCEEEEESEE
T ss_pred HHHHHHCCCEEEEECCC-HHHHHHHHHHHHHHHHCCCCCCEEEEEECCE
T ss_conf 99998689989998287-8899999999864030166524289996534
No 62
>2j2s_A Zinc finger protein HRX; transcription regulation, chromosomal rearrangement, DNA-binding, bromodomain, polymorphism, mixed lineage leukaemia; NMR {Homo sapiens} PDB: 2kkf_A 2jyi_A
Probab=24.21 E-value=15 Score=14.93 Aligned_cols=12 Identities=25% Similarity=0.897 Sum_probs=9.6
Q ss_pred CCCCCHHHHHHH
Q ss_conf 998687789999
Q gi|254781031|r 217 GCNSCPACYLRQ 228 (240)
Q Consensus 217 hCG~C~~C~~R~ 228 (240)
-||.|..|+++.
T Consensus 24 DCG~C~~C~d~~ 35 (72)
T 2j2s_A 24 DCGVCTNCLDKP 35 (72)
T ss_dssp CCSSSHHHHTSG
T ss_pred CCCCCHHHHCCC
T ss_conf 686886452766
No 63
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidoreductase; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=22.86 E-value=29 Score=13.11 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=24.6
Q ss_pred HCCCCCEEEEEECCHHH---HHHHHHHHHCCCEEEEEEE
Q ss_conf 13599489998096569---9999999974983999997
Q gi|254781031|r 5 IKKAPSALLLFSGGQDS---STCLSWALDRFDRVETLSF 40 (240)
Q Consensus 5 ~~~~~~av~l~SGGlDS---~~~l~~l~~~~~~v~~i~~ 40 (240)
|=+.|+.|+-.||++-+ .-++-.|.+.|.+|..|-.
T Consensus 5 ~l~~KkIllgiTGSiaa~k~~~li~~L~~~g~~V~vv~T 43 (194)
T 1p3y_1 5 ILKDKKLLIGICGSISSVGISSYLLYFKSFFKEIRVVMT 43 (194)
T ss_dssp TGGGCEEEEEECSCGGGGGTHHHHHHHTTTSSEEEEEEC
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 448996999994889999999999999978993999996
No 64
>3l0a_A Putative exonuclease; RER070207002219, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PE4; 2.19A {Eubacterium rectale}
Probab=22.64 E-value=26 Score=13.41 Aligned_cols=15 Identities=20% Similarity=0.536 Sum_probs=11.5
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 889986877899999
Q gi|254781031|r 215 GYGCNSCPACYLRQK 229 (240)
Q Consensus 215 ~~hCG~C~~C~~R~~ 229 (240)
+.+|+.|..|.-.+.
T Consensus 238 p~~C~~CdYCr~~k~ 252 (266)
T 3l0a_A 238 PDRCELCDCCRHNRV 252 (266)
T ss_dssp CCCCSCSHHHHHHCC
T ss_pred CCCCCCCCCCHHHHH
T ss_conf 998998987720300
No 65
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isoprenoid biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=22.45 E-value=30 Score=13.06 Aligned_cols=36 Identities=8% Similarity=0.155 Sum_probs=26.2
Q ss_pred CEEEEEEC-C-------HHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 48999809-6-------569999999997498399999767788
Q gi|254781031|r 10 SALLLFSG-G-------QDSSTCLSWALDRFDRVETLSFDYGQR 45 (240)
Q Consensus 10 ~av~l~SG-G-------lDS~~~l~~l~~~~~~v~~i~~~ygq~ 45 (240)
++.++||| | ..+...++-|.+.|.++..+.-|-.|.
T Consensus 25 ~~aviLsGcG~~DGsEi~Eav~~l~~L~raG~~v~~~aPd~~q~ 68 (242)
T 3l3b_A 25 NSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQK 68 (242)
T ss_dssp EEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCS
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 46999808978674229799999999998899799994698755
No 66
>3gr6_A Enoyl-[acyl-carrier-protein] reductase [NADH]; enoyl reductase, NADP, triclosan, oxidoreductase; HET: NAP TCL; 2.28A {Staphylococcus aureus} PDB: 3gns_A* 3gnt_A
Probab=20.33 E-value=33 Score=12.79 Aligned_cols=38 Identities=3% Similarity=-0.132 Sum_probs=24.9
Q ss_pred CCHHHCCCCCEEEEEEC-----CHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 91221359948999809-----65699999999974983999997
Q gi|254781031|r 1 MNDIIKKAPSALLLFSG-----GQDSSTCLSWALDRFDRVETLSF 40 (240)
Q Consensus 1 ~~~~~~~~~~av~l~SG-----GlDS~~~l~~l~~~~~~v~~i~~ 40 (240)
|..||+-..|.+ |..| |+=..+ +..|.++|++|+....
T Consensus 2 ~~~m~~l~~K~~-lItGaas~~GIG~ai-A~~la~~G~~V~i~~r 44 (260)
T 3gr6_A 2 AAAMLNLENKTY-VIMGIANKRSIAFGV-AKVLDQLGAKLVFTYR 44 (260)
T ss_dssp ----CCCSSCEE-EEECCCSTTCHHHHH-HHHHHHTTCEEEEEES
T ss_pred CCHHCCCCCCEE-EEECCCCCCHHHHHH-HHHHHHCCCEEEEEEC
T ss_conf 410179899989-998999984799999-9999987999999968
Done!