HHSEARCH alignment of GI: 254781031 and SCOP domain: d1ni5a1

Alignment
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.25  E-value=2.5e-11  Score=86.44  Aligned_cols=160  Identities=12%  Similarity=-0.010  Sum_probs=82.7

Q ss_pred             HHHCCCCCEEEEEECCHHHHHHHHHHHH-----CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             2213599489998096569999999997-----49839999976778877727999999999999988875203561587
Q gi|254781031|r    3 DIIKKAPSALLLFSGGQDSSTCLSWALD-----RFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHIL   77 (240)
Q Consensus         3 ~~~~~~~~av~l~SGGlDS~~~l~~l~~-----~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (240)
                      ..+.+.+|.+|.+|||+||+++|+.|.+     .+.++.++|+|+|-+..+..+     ++.+...+.   ....+.++.
T Consensus         8 ~~l~~~kkvlva~SGG~DS~~Ll~ll~~~~~~~~~~~l~~~~vdh~~r~~s~~~-----~~~~~~~~~---~~~i~~~i~   79 (227)
T d1ni5a1           8 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAW-----VTHCENVCQ---QWQVPLVVE   79 (227)
T ss_dssp             HHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHH-----HHHHHHHHH---HTTCCEEEE
T ss_pred             HHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHH-----HHHHHHHHH---HCCCCCEEE
T ss_conf             542889968999638499999999999998758895699998678987521445-----899999975---415763266


Q ss_pred             ECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCC---CCHHHHHHH
Q ss_conf             50110322444332220110001233101111111223337777774339936511454444345554---430247777
Q gi|254781031|r   78 PLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPD---CRHDTIRAI  154 (240)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~---~~~~~~~~~  154 (240)
                      ..... .     ......         ......+..      .-.+...+...+..|.+.+|...+--   .+......+
T Consensus        80 ~~~~~-~-----~~~~~e---------~~~~~~~~~------~~~~~~~~~~~i~~gH~~dD~~Et~l~~l~~g~~~~~l  138 (227)
T d1ni5a1          80 RVQLA-Q-----EGLGIE---------AQARQARYQ------AFARTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGL  138 (227)
T ss_dssp             CCCCC-C-----SSSTTT---------THHHHHHHH------HHHHTCCTTEEEECCCCHHHHHHHHHHHHTTTCCTTGG
T ss_pred             ECCCC-C-----CCCCHH---------HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             31333-3-----443036---------689999999------88877520389999988886540566766326421111


Q ss_pred             HHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCH
Q ss_conf             7677530643216775313898899999999828200
Q gi|254781031|r  155 ETAINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQD  191 (240)
Q Consensus       155 ~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~~  191 (240)
                      ..+........+.+++|++..+|.||.+.+...+.+.
T Consensus       139 ~~~~~~~~~~~~~iiRPLl~~~k~eI~~~~~~~~l~~  175 (227)
T d1ni5a1         139 SAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRW  175 (227)
T ss_dssp             GCCCSEEEETTEEEECGGGSCCHHHHHHHHHHTTCCC
T ss_pred             CCCCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCCC
T ss_conf             1100101235443126664277999998750436664


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: tRNA-Ile-lysidine synthetase, TilS, N-terminal domain
species: Escherichia coli [TaxId: 562]