RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781031|ref|YP_003065444.1| exsB protein [Candidatus
Liberibacter asiaticus str. psy62]
(240 letters)
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA
modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
(A:)
Length = 219
Score = 98.2 bits (243), Expect = 1e-21
Identities = 93/224 (41%), Positives = 137/224 (61%), Gaps = 18/224 (8%)
Query: 11 ALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDS 70
A+++FSGGQDS+TCL WAL F+ VET++F Y QR+ E+E + +K+ S
Sbjct: 6 AIVVFSGGQDSTTCLLWALKEFEEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMS 65
Query: 71 LGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITN 130
L ++ ++ ++++D LP+TFVPGRN++FL FA+ LAY++G +
Sbjct: 66 LLNQLAP---------NALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASILAYQIGARH 116
Query: 131 IVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQ 190
I+ GVCETD+SGYPDCR + +++ +NL ME +HTPLMWL K ETWKLA ++G
Sbjct: 117 IITGVCETDFSGYPDCRDEFVKSCNVTVNLAMEKPFVIHTPLMWLNKAETWKLADELG-- 174
Query: 191 DLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQKGWMEF 234
++ + + TCY G GC CPAC+LR KG+ E+
Sbjct: 175 -ALDFVKNNTLTCYNG------IIADGCGECPACHLRSKGYEEY 211
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1,
hypothetical protein, structural genomics; 2.40A
{Pectobacterium atrosepticum SCRI1043} (A:1-162)
Length = 162
Score = 95.4 bits (236), Expect = 6e-21
Identities = 64/162 (39%), Positives = 92/162 (56%), Gaps = 5/162 (3%)
Query: 11 ALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDS 70
A+++FSGGQDS+TCL AL +D V ++FDYGQR++ E+E ++ +L
Sbjct: 5 AVVVFSGGQDSTTCLIQALQDYDDVHCITFDYGQRHRAEIEV---AQELSQKLGAAAHKV 61
Query: 71 LGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITN 130
L D L + +PNTFVPGRNI+FL A+ AY++G
Sbjct: 62 L--DVGLLNELATSSLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEA 119
Query: 131 IVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPL 172
++ GVCETD+SGYPDCR + ++A+ AI LG+ + TPL
Sbjct: 120 VITGVCETDFSGYPDCRDEFVKALNQAIVLGIARDIRFETPL 161
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics,
JCSG, protein structure initiative, PSI, joint center
for structural genomics; 1.65A {Thermotoga maritima}
(A:1-183)
Length = 183
Score = 77.3 bits (189), Expect = 2e-15
Identities = 18/187 (9%), Positives = 47/187 (25%), Gaps = 16/187 (8%)
Query: 2 NDIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIV 61
+ +L +SGG D+S L W ++ V + GQ++ ++
Sbjct: 8 HHHHHMKEKVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQKDDFVAIKEKALKTGAS 67
Query: 62 ELMPKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAAT 121
++ + + + + + +
Sbjct: 68 KVYVED-------------LRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVE 114
Query: 122 LAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETW 181
+A + G + G T A+ + + + + +
Sbjct: 115 IAEKEGAQYVAHGATGKGNDQVRFEL--TYAALNPNLKVISPW-KDPEFLAKFKGRTDLI 171
Query: 182 KLAQDIG 188
A + G
Sbjct: 172 NYAMEKG 178
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis,
aspartate, citrulline, structural genomics, structural
genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo
sapiens} (A:1-168)
Length = 168
Score = 77.3 bits (189), Expect = 2e-15
Identities = 23/180 (12%), Positives = 48/180 (26%), Gaps = 17/180 (9%)
Query: 9 PSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWK 68
S +L +SGG D+S L W ++ V + GQ+ E + ++
Sbjct: 2 GSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALK----------- 50
Query: 69 DSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGI 128
LG + + + + + + +A R G
Sbjct: 51 --LGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGA 108
Query: 129 TNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQDIG 188
+ G A + + + K+ + + A+ G
Sbjct: 109 KYVSHGATGKGNDQVRFELSCYSLAPQIKVIAP----WRMPEFYNRFKRNDLMEYAKQHG 164
>2hma_A Probable tRNA (5-methylaminomethyl-2-
thiouridylate)-methyltransferase; alpha-beta, beta
barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A
{Streptococcus pneumoniae} (A:1-199)
Length = 199
Score = 77.0 bits (188), Expect = 2e-15
Identities = 29/190 (15%), Positives = 49/190 (25%), Gaps = 11/190 (5%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELM 64
++ SGG DSS ++ V + C + + +
Sbjct: 6 DNSKTRVVVGXSGGVDSSVTALLLKEQGYDVIGIFXKNWDDTDENGVCT---ATEDYKDV 62
Query: 65 PKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAY 124
D +G + + + + + PN V I A
Sbjct: 63 VAVADQIGIPYY--SVNFEKEYWDRVFEYFLAEYRAGRTPNPDVXCNKEIKFKAFLDYAI 120
Query: 125 RLGITNIVIGVCETDYSGYPDCRH------DTIRAIETAINLGMESHVTVHTPLMWLKKY 178
LG + G H + L E PL L+K
Sbjct: 121 TLGADYVATGHYARVARDEDGTVHXLRGVDNGKDQTYFLSQLSQEQLQKTXFPLGHLEKP 180
Query: 179 ETWKLAQDIG 188
E +LA++ G
Sbjct: 181 EVRRLAEEAG 190
>2c5s_A THII, probable thiamine biosynthesis protein THII;
RNA-binding protein, RNA binding protein, tRNA
modification, 4-thiouridine synthase; HET: AMP; 2.5A
{Bacillus anthracis} (A:183-413)
Length = 231
Score = 75.0 bits (183), Expect = 8e-15
Identities = 31/204 (15%), Positives = 56/204 (27%), Gaps = 25/204 (12%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELM 64
+ ++L SGG DS + R VE + F + + +
Sbjct: 2 VGVGGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPPFTSERAK----------QKV 51
Query: 65 PKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAY 124
L + H V I + + + + +A
Sbjct: 52 IDLAQELTKYCKRV------TLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAE 105
Query: 125 RLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLA 184
I G + TI ++ V PL+ + K E K+A
Sbjct: 106 ERNALAITTGESLGQVASQTLDSMHTIN---------EVTNYPVIRPLITMDKLEIIKIA 156
Query: 185 QDIGGQDLVNLILEESHTCYLGKR 208
++IG D+ E+ T +
Sbjct: 157 EEIGTYDISIRPYEDCCTVFTPAS 180
>1k92_A Argininosuccinate synthase, argininosuccinate; N-type ATP
pyrophosphatase, ligase; 1.60A {Escherichia coli}
(A:1-183)
Length = 183
Score = 72.7 bits (177), Expect = 4e-14
Identities = 22/184 (11%), Positives = 49/184 (26%), Gaps = 11/184 (5%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELM 64
+ + FSGG D+S L W + + + GQ ++ + + +
Sbjct: 7 LPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRAMEYGAEN 66
Query: 65 PKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAY 124
+ D + +A + + NT GR + + A
Sbjct: 67 ARLIDCRKQLVAEGIAAIQCGAFH-------NTTGGLTYFNTTPLGRAVTGTMLVA-AMK 118
Query: 125 RLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLA 184
G+ G T + + + + + ++E +
Sbjct: 119 EDGVNIWGDG--STYKGNDIERFYRYGLLTNAELQ-IYKPWLDTDFIDELGGRHEMSEFM 175
Query: 185 QDIG 188
G
Sbjct: 176 IACG 179
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens} (A:218-446)
Length = 229
Score = 69.7 bits (169), Expect = 3e-13
Identities = 30/195 (15%), Positives = 59/195 (30%), Gaps = 11/195 (5%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRF--DRVETLSFDYGQRNKVELEC------RLCV 56
L+L SGG DS+ C + ++V + D G K E + +L +
Sbjct: 20 RVGTSKVLVLLSGGVDSTVCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGI 79
Query: 57 RKKIVELMPK-WKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIF 115
+ K++ + + +L + + + + +TFV N +
Sbjct: 80 QVKVINAAHSFYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVI 139
Query: 116 LVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLG--MESHVTVHTPLM 173
+ S + + I+ L + V PL
Sbjct: 140 GEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLK 199
Query: 174 WLKKYETWKLAQDIG 188
K E L +++G
Sbjct: 200 DFHKDEVRILGRELG 214
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex,
transferase/RNA complex; 3.10A {Escherichia coli} PDB:
2det_A 2deu_A* (A:1-207)
Length = 207
Score = 67.8 bits (164), Expect = 1e-12
Identities = 34/192 (17%), Positives = 55/192 (28%), Gaps = 9/192 (4%)
Query: 2 NDIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIV 61
+ + A ++ SGG DSS + +VE L + + E C
Sbjct: 11 GSMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADA 70
Query: 62 ELMPKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAAT 121
+ D LG + + + +A + + I F F
Sbjct: 71 Q---AVCDKLGIELHTV-NFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEF 126
Query: 122 LAYRLGITNIVIGVCETDYSGYPDCRHD-----TIRAIETAINLGMESHVTVHTPLMWLK 176
A LG I G R L E P+ L+
Sbjct: 127 AAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELE 186
Query: 177 KYETWKLAQDIG 188
K + K+A+D+G
Sbjct: 187 KPQVRKIAEDLG 198
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1,
hypothetical protein, structural genomics; 2.40A
{Pectobacterium atrosepticum SCRI1043} (A:163-232)
Length = 70
Score = 66.3 bits (162), Expect = 4e-12
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 174 WLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQKGWME 233
WL K ETW LA ++ + + TCY G G GC C AC+LR G +
Sbjct: 1 WLNKAETWALADYYQ---QLDTVRYHTLTCYNG------IKGDGCGQCAACHLRANGLAQ 51
Query: 234 FKE 236
+++
Sbjct: 52 YQK 54
>1kor_A Argininosuccinate synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: ANP ARG; 1.95A {Thermus thermophilus}
(A:1-165)
Length = 165
Score = 66.2 bits (160), Expect = 4e-12
Identities = 24/179 (13%), Positives = 45/179 (25%), Gaps = 21/179 (11%)
Query: 11 ALLLFSGGQDSSTCLSWALDRF-DRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKD 69
+L +SGG D+S L W + + V + D GQ +VE +R
Sbjct: 3 IVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALR------------ 50
Query: 70 SLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGIT 129
G + L + + + + + +A G
Sbjct: 51 -TGASKAIALDLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAE 109
Query: 130 NIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQDIG 188
I G + + + + + E A+ G
Sbjct: 110 AIAHGATGKGNDQVRFELTAYALKPDIKV-------IAPWREWSFQGRKEMIAYAEAHG 161
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam
synthetase, AS-B, class B asparagine synthetase,
AMP-CPP; 2.30A {Pectobacterium carotovorum}
(A:237-397,A:442-503)
Length = 223
Score = 63.6 bits (154), Expect = 2e-11
Identities = 22/184 (11%), Positives = 48/184 (26%), Gaps = 28/184 (15%)
Query: 7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPK 66
+ + + SGG DSS + A F ++ T S N+ E ++
Sbjct: 1 RFDTVGIPLSGGLDSSLVTALASRHFKKLNTYSIGTELSNEFEFSQQVA----------- 49
Query: 67 WKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRL 126
D+LG H + + ++ + + +I D +F +
Sbjct: 50 --DALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSG-------LFNVYRQAQG 100
Query: 127 GITNIVIGVCETDY-SGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKK--YETWKL 183
++ ++ G G + V + +
Sbjct: 101 QVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQ-----VYRTRWTGEFATHGASCYGI 155
Query: 184 AQDI 187
Sbjct: 156 DIRH 159
>1kqp_A NAD+ synthase;, NH(3)-dependent NAD(+) synthetase; ligase,
amidotransferase, ATP pyrophosphatase, NAD-adenylate;
HET: ADJ; 1.03A {Bacillus subtilis} (A:15-212)
Length = 198
Score = 63.1 bits (152), Expect = 3e-11
Identities = 21/184 (11%), Positives = 43/184 (23%), Gaps = 21/184 (11%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELM 64
A +L SGGQDS+ A + + D +
Sbjct: 21 KTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQQDEDDAQLAL 80
Query: 65 PKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAY 124
K + + + D + ++ +
Sbjct: 81 KFIKPDKSWKFDIKSTVSAFSDQ------YQQETGDQLTDFNKGNVKARTRMIAQYAIGG 134
Query: 125 RLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLA 184
+ G+ + +G+ D + PL L K + L
Sbjct: 135 QEGLLVLGTDHAAEAVTGFFTKYGDGGADLL---------------PLTGLTKRQGRTLL 179
Query: 185 QDIG 188
+++G
Sbjct: 180 KELG 183
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA
methyltransferase, methanocaldococcus jannaschii DSM ,
PSI- 2; 2.50A {Methanocaldococcus jannaschii} (A:)
Length = 203
Score = 61.5 bits (148), Expect = 1e-10
Identities = 25/178 (14%), Positives = 46/178 (25%), Gaps = 32/178 (17%)
Query: 11 ALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDS 70
+LFSGG+DSS ++ ++G +L +
Sbjct: 9 VHVLFSGGKDSSLSAVILKKLGYNPHLITINFGVIPSYKLAEETAKILGFKHKVITLDRK 68
Query: 71 LGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITN 130
+ E + + PG I ++ +
Sbjct: 69 IVEKAA------------------------DXIIEHKYPGPAIQYVHKTVLEILADEYSI 104
Query: 131 IVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQDIG 188
+ G D P + I+++E N+ TPL LA +
Sbjct: 105 LADGTRRDDR--VPKLSYSEIQSLEXRKNIQY------ITPLXGFGYKTLRHLASEFF 154
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase;
HET: AMP; 1.70A {Escherichia coli} (A:16-215)
Length = 200
Score = 61.2 bits (147), Expect = 1e-10
Identities = 20/184 (10%), Positives = 47/184 (25%), Gaps = 20/184 (10%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELM 64
S +L SGGQDS+ + + + + + + V+ +
Sbjct: 22 YPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESL-QFIAVRLPYGVQADEQDCQ 80
Query: 65 PKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAY 124
+ + ++ + +++ D N + ++A
Sbjct: 81 DAIAFIQPDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKAR----ERMKAQYSIAG 136
Query: 125 RLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLA 184
+ +G+ D I PL L K + +L
Sbjct: 137 MTSGVVVGTDHAAEAITGFFTKYGDGGTDIN---------------PLYRLNKRQGKQLL 181
Query: 185 QDIG 188
+
Sbjct: 182 AALA 185
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP
binding, ATP binding, purine nucleotide biosynthetic
pathway; 2.10A {Thermus thermophilus HB8} PDB: 2ywc_A*
(A:189-382)
Length = 194
Score = 59.7 bits (143), Expect = 3e-10
Identities = 28/185 (15%), Positives = 43/185 (23%), Gaps = 21/185 (11%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELM 64
LL SGG DSST + D+G E E
Sbjct: 18 RAGKDRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLLRLGEREEVE---------- 67
Query: 65 PKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAY 124
+LG + ++ A + + + F+
Sbjct: 68 -GALRALGVNLLVVDAK---------ERFLKALKGVEDPEEKRKIIGREFVAAFSQVARE 117
Query: 125 RLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGME-SHVTVHTPLMWLKKYETWKL 183
R + G D + E + P L K E +L
Sbjct: 118 RGPFRFLAQGTLYPDVIESAGGHGAAKIKSHHNVGGLPEDLEFELLEPFRLLFKDEVREL 177
Query: 184 AQDIG 188
A +G
Sbjct: 178 ALLLG 182
>3dla_A Glutamine-dependent NAD(+) synthetase; glutaminase, ammonia
tunneling, enzyme, glutamine-amido transferase,
ATP-binding, ligase; HET: NXX ONL; 2.35A {Mycobacterium
tuberculosis} (A:323-553)
Length = 231
Score = 59.6 bits (143), Expect = 3e-10
Identities = 24/223 (10%), Positives = 47/223 (21%), Gaps = 32/223 (14%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELM 64
P ++ SGG DS+ L A DR D +
Sbjct: 36 ALDYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFA----LPGFATGEHTKNNA 91
Query: 65 PKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAY 124
K +LG + + TF + + + +A
Sbjct: 92 IKLARALGVTFSEIDIGDTARLMLHTIGHPYSVGEKVY-DVTFENVQAGLRTDYLFRIAN 150
Query: 125 RLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLA 184
+ G + G G+ ++ + + K L
Sbjct: 151 QRGGIVLGTGDLSELALGWSTYGVGD--------------QMSHYNVNAGVPKTLIQHLI 196
Query: 185 QDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLR 227
+ + E+ ++ L
Sbjct: 197 RWVI---SAGEFGEKVGEVLQSV----------LDTEITPELI 226
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit
B; structural genomics, NPPSFA; 1.43A {Pyrococcus
horikoshii OT3} PDB: 2z0c_A 3a4i_A (A:1-189)
Length = 189
Score = 56.6 bits (135), Expect = 3e-09
Identities = 29/185 (15%), Positives = 60/185 (32%), Gaps = 25/185 (13%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRF-DRVETLSFDYGQRNKVELECRLCVRKKIVEL 63
A++ SGG DSST A DR+ + + G + + +
Sbjct: 17 TVGDSKAIIALSGGVDSSTAAVLAHKAIGDRLHAVFVNTGF----------LRKGEPEFV 66
Query: 64 MPKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLA 123
+ ++D G + + ++ P +F+ +A
Sbjct: 67 VKTFRDEFGMNLH----------YVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVA 116
Query: 124 YRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKL 183
++G ++ G D+ + L + ++ + PL L K E +L
Sbjct: 117 KKIGAEYLIQGTIAPDWIESQGKIK----SHHNVGGLPEKLNLKLIEPLRDLYKDEVREL 172
Query: 184 AQDIG 188
A+ +G
Sbjct: 173 AKFLG 177
>1sur_A PAPS reductase; assimilatory sulfate reduction,
3-phospho-adenylyl-sulfate reductase, oxidoreductase;
2.00A {Escherichia coli} (A:)
Length = 215
Score = 55.0 bits (131), Expect = 9e-09
Identities = 17/185 (9%), Positives = 39/185 (21%), Gaps = 27/185 (14%)
Query: 4 IIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVEL 63
+ +L S G ++ L + + D G + K
Sbjct: 40 LDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDK---- 95
Query: 64 MPKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLA 123
L + + + S+ + +I +
Sbjct: 96 -------LKLNLKVY-----RATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRAL 143
Query: 124 YRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKL 183
L G+ + L ++ V P++ ++
Sbjct: 144 KELNAQTWFAGLRREQSGSRANLP-----------VLAIQRGVFKVLPIIDWDNRTIYQY 192
Query: 184 AQDIG 188
Q G
Sbjct: 193 LQKHG 197
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine
nucleotide alpha hydrolase-like, ATP- binding, ligase,
nucleotide-binding; HET: AMP; 1.85A {Francisella
tularensis subsp} (A:)
Length = 249
Score = 53.5 bits (127), Expect = 2e-08
Identities = 32/232 (13%), Positives = 64/232 (27%), Gaps = 39/232 (16%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELM 64
A ++ SGG DS+ S A+ L +++ + I L
Sbjct: 26 NYPAEGFVIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQHQDMQ---DALELIEMLN 82
Query: 65 PKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAY 124
+ + ++ + N+ Q N R + +A
Sbjct: 83 IEHYTISIQPAYEAF-----LASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNR 137
Query: 125 RLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLA 184
+ I Y GY D PL+ LKK + ++L
Sbjct: 138 IV----IGTDNACEWYMGYFTKFGDGAA---------------DILPLVNLKKSQVFELG 178
Query: 185 QDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQKGWMEFKE 236
+ + + IL+++ + L G + + +F +
Sbjct: 179 KYLD---VPKNILDKAPSAGL---------WQGQTDEDEMGVTYQEIDDFLD 218
>1gpm_A GMP synthetase, XMP aminase; class I glutamine
amidotransferase, N-type ATP pyrophosphatase,
transferase (glutamine amidotransferase); HET: AMP CIT;
2.20A {Escherichia coli K12} (A:205-404)
Length = 200
Score = 51.2 bits (121), Expect = 1e-07
Identities = 30/188 (15%), Positives = 48/188 (25%), Gaps = 23/188 (12%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRF-DRVETLSFDYGQRNKVELECRLCVRKKIVEL 63
+L SGG DSS + + D G E E +
Sbjct: 20 QVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQV--LDMFGDHF 77
Query: 64 MPKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLA 123
ED L + +N+ + VF
Sbjct: 78 GLNIVHVPAEDRFL-----------------SALAGENDPEAKRKIIGRVFVEVFDEEAL 120
Query: 124 YRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLG---MESHVTVHTPLMWLKKYET 180
+ + G D I++ N+G E + + PL L K E
Sbjct: 121 KLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEV 180
Query: 181 WKLAQDIG 188
K+ ++G
Sbjct: 181 RKIGLELG 188
>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 2.40A {Pyrococcus horikoshii} (A:1-124)
Length = 124
Score = 49.3 bits (117), Expect = 5e-07
Identities = 26/126 (20%), Positives = 39/126 (30%), Gaps = 7/126 (5%)
Query: 6 KKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMP 65
+L+SGG+DS+ L WAL RV L + VEL
Sbjct: 2 VGLADVAVLYSGGKDSNYALYWALKSGLRVRYLVSMVSENE-----ESYMYHTPNVELTS 56
Query: 66 KWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYR 125
+LG I KNV ++ + + + R +A
Sbjct: 57 LQARALGIPIIKGFTKGEKEKEVEDLKNVLEGLKVDGIVAGALASRYQKE--RIENVARE 114
Query: 126 LGITNI 131
LG+
Sbjct: 115 LGLKVY 120
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type
ATP-ppase, structural genomics, translation, NPPSFA;
2.42A {Aquifex aeolicus} (A:1-217)
Length = 217
Score = 48.9 bits (115), Expect = 6e-07
Identities = 20/184 (10%), Positives = 42/184 (22%), Gaps = 19/184 (10%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELM 64
L+ FSGG DS L + N ++ E
Sbjct: 21 FSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNH----MLRESAERDEEFC 76
Query: 65 PKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAY 124
++ + ++ + + F +
Sbjct: 77 KEFAKERNMKIFVG--------------KEDVRAFAKENRMSLEEAGRFLRYKFLKEILE 122
Query: 125 RLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLA 184
G I D ++ + + + PL ++K+ E + A
Sbjct: 123 SEGFDCIATAHHLNDLLETSLLFFTRGTGLDG-LIGFLPKEEVIRRPLYYVKRSEIEEYA 181
Query: 185 QDIG 188
+ G
Sbjct: 182 KFKG 185
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide
crosslinked complex, oxidoreductase; 3.00A {Escherichia
coli} (A:)
Length = 252
Score = 46.2 bits (108), Expect = 4e-06
Identities = 21/212 (9%), Positives = 47/212 (22%), Gaps = 30/212 (14%)
Query: 4 IIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVEL 63
+ +L S G ++ L + + D G
Sbjct: 41 LDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRF----------- 89
Query: 64 MPKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLA 123
+ + D L + + + S+ + +I +
Sbjct: 90 IDELTDKLKLNL-----KVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRAL 144
Query: 124 YRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKL 183
L G+ + L ++ V P++ ++
Sbjct: 145 KELNAQTWFAGLRREQSGSRANLPV-----------LAIQRGVFKVLPIIDWDNRTIYQY 193
Query: 184 AQDIGGQDLVNLILEESHTCYLGKRDKRYEWG 215
Q G L L + +G +W
Sbjct: 194 LQKHG---LKYHPLWDEGYLSVGDTHTTRKWE 222
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA
complex; 3.65A {Geobacillus kaustophilus} (A:1-215)
Length = 215
Score = 44.4 bits (103), Expect = 2e-05
Identities = 20/187 (10%), Positives = 42/187 (22%), Gaps = 21/187 (11%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELM 64
+ + + ++ SGG DS L L D + +
Sbjct: 15 LSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRES----------- 63
Query: 65 PKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAY 124
E+ + T + + + I F A L
Sbjct: 64 -------EEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELME 116
Query: 125 RLGITNIVIGVCETDYSGYPDCRHDTIRAIETAIN---LGMESHVTVHTPLMWLKKYETW 181
+ + +G D R + + P + + + E
Sbjct: 117 KHQAGYVAVGHHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGYLIRPFLAVSRAEIE 176
Query: 182 KLAQDIG 188
+ +G
Sbjct: 177 AYCRQMG 183
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.10A {Pyrococcus horikoshii
OT3} (A:1-129)
Length = 129
Score = 41.7 bits (97), Expect = 1e-04
Identities = 19/129 (14%), Positives = 37/129 (28%), Gaps = 20/129 (15%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELM 64
K ++ SGG DS+T A + + L ++E
Sbjct: 19 EKGNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFENKDVEDAK---------- 68
Query: 65 PKWKDSLGEDHI-LPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLA 123
+ LG + + + + D +L N + + R ++ A
Sbjct: 69 -LVAEKLGIGYKVINIKPIVDSFVENLELN------LDRKGLGNIMSR--TRMIMLYAHA 119
Query: 124 YRLGITNIV 132
LG +
Sbjct: 120 NSLGRIVLG 128
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase;
HET: DND ATP; 1.70A {Helicobacter pylori} (A:1-132)
Length = 132
Score = 38.2 bits (88), Expect = 0.001
Identities = 13/126 (10%), Positives = 23/126 (18%), Gaps = 16/126 (12%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRF-DRVETLSFDYGQRNKVELECRLCVRKKIVEL 63
+ + SGG DS+ F + L +
Sbjct: 22 KRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKT---DALNLCEKF 78
Query: 64 MPKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLA 123
+ +A I S N R ++
Sbjct: 79 SIPY-------TEYSIAPYDAIFSSHFK-----DASLTRKGNFCARLRMAFLYDYSLKSD 126
Query: 124 YRLGIT 129
+ T
Sbjct: 127 SLVIGT 132
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI,
protein structure initiative; 2.20A {Burkholderia
pseudomallei 1710B} (A:23-169)
Length = 147
Score = 34.0 bits (77), Expect = 0.021
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 8/126 (6%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELM 64
+ +L SGG DSST A +R+ +D V + + +
Sbjct: 21 TAGLRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARF---VAMRLPYGAQHDEADAR 77
Query: 65 PKWKDSLGEDHI-LPLAILGDISHSSLTKNVAMK--IQDNNLPNTFVPGRNIIFLVFAAT 121
++ + + + D ++L + + R + +A
Sbjct: 78 RALAFVRADETLTVDVKPAADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYA-- 135
Query: 122 LAYRLG 127
+A
Sbjct: 136 VAGARN 141
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic
acid, AMPCPP, CEA, carboxyethylarginine, hydrolase;
HET: APC CMA; 1.95A {Streptomyces clavuligerus}
(A:214-513)
Length = 300
Score = 32.9 bits (73), Expect = 0.037
Identities = 11/55 (20%), Positives = 22/55 (40%)
Query: 1 MNDIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLC 55
+ + + L++ SGG DSS + A ++T+S N+ +
Sbjct: 21 VAQRVTPGDTPLVVLSGGIDSSGVAACAHRAAGELDTVSMGTDTSNEFREARAVV 75
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate
reduction, PAPS reductase, oxidoreductase; HET: A3P;
2.10A {Saccharomyces cerevisiae} (A:)
Length = 261
Score = 31.2 bits (69), Expect = 0.12
Identities = 21/191 (10%), Positives = 46/191 (24%), Gaps = 24/191 (12%)
Query: 1 MNDIIKKAPSALLLFSGGQDSSTCL---SWALDRFDRVETLSFDYGQRNKVELECRLCVR 57
+ I P + G + S +++ E L D L + +
Sbjct: 34 IAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIE 93
Query: 58 KKIVELMPKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLV 117
KK + + + + A K D + +
Sbjct: 94 KK-----------YYQPKNQTIHVY-KPDGCESEADFASKYGDFLWEKDDDKYDYLAKVE 141
Query: 118 FAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKK 177
A L I+ + G + R+ + I + + + PL+
Sbjct: 142 PAHRAYKELHISAVFTGRR---------KSQGSARSQLSIIEIDELNGILKINPLINWTF 192
Query: 178 YETWKLAQDIG 188
+ +
Sbjct: 193 EQVKQYIDANN 203
>1ni5_A Putative cell cycle protein MESJ; structural genomics,
ATP, ATPase, PP-type, PSI, protein structure
initiative; 2.65A {Escherichia coli} (A:1-234)
Length = 234
Score = 29.6 bits (65), Expect = 0.35
Identities = 9/63 (14%), Positives = 19/63 (30%)
Query: 5 IKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELM 64
+ + L+ FSGG DS+ L + ++ + +
Sbjct: 10 LLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVC 69
Query: 65 PKW 67
+W
Sbjct: 70 QQW 72
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta
protein, rossmann- like fold, APO-form, extended loop
region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A*
3g5a_A* 3g6k_A* (A:)
Length = 308
Score = 29.2 bits (64), Expect = 0.55
Identities = 7/58 (12%), Positives = 12/58 (20%)
Query: 1 MNDIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRK 58
++GG+D L L + Q + L
Sbjct: 51 FPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLP 108
>1ct9_A Asparagine synthetase B; amidotransferase, substrate
channeling, asparagine biosynthesis; HET: AMP GLN;
2.00A {Escherichia coli} (A:200-553)
Length = 354
Score = 28.7 bits (62), Expect = 0.72
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 1 MNDIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVE 36
+ + +L SGG DSS + R
Sbjct: 20 VKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRV 55
>2r79_A Periplasmic binding protein; heme transport, transport
protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
(A:1-91)
Length = 91
Score = 27.2 bits (60), Expect = 2.0
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 108 VPGRNIIFLVFAAT-LAYRLGITNIVIGVCETDYSGYPD 145
+P R + + + LG + ++GV S +P
Sbjct: 1 LPQR-WVSAGGSLSEWVVALGGESKLVGV--DTTSQHPQ 36
>2gw6_A TRNA-splicing endonuclease subunit SEN15; SEN15_human, tRNA
endonuclease, structural genomics, PSI, protein
structure initiative; NMR {Homo sapiens} (A:)
Length = 123
Score = 26.8 bits (59), Expect = 2.5
Identities = 9/62 (14%), Positives = 26/62 (41%)
Query: 45 RNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLP 104
++ E+ C +++ L+ + G ++P I +SH+ + + + + P
Sbjct: 40 KSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRIREILKASRKLQGDP 99
Query: 105 NT 106
+
Sbjct: 100 DL 101
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA
synthetase class II, ligase; 3.23A {Methanococcus
maripaludis S2} (A:550-614)
Length = 65
Score = 26.6 bits (58), Expect = 3.3
Identities = 4/7 (57%), Positives = 6/7 (85%)
Query: 93 NVAMKIQ 99
NV +KI+
Sbjct: 1 NVEVKIE 7
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A* (A:108-142,A:301-396)
Length = 131
Score = 26.2 bits (58), Expect = 3.9
Identities = 2/34 (5%), Positives = 8/34 (23%), Gaps = 1/34 (2%)
Query: 82 LGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIF 115
+ ++S L + + +
Sbjct: 44 ITELSRLPLARVSELLRPYAEEREPGH-AERVKN 76
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA
synthetase class II, ligase; 3.23A {Methanococcus
maripaludis S2} (B:550-611)
Length = 62
Score = 26.2 bits (57), Expect = 4.1
Identities = 4/7 (57%), Positives = 6/7 (85%)
Query: 93 NVAMKIQ 99
NV +KI+
Sbjct: 1 NVEVKIE 7
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange
factor, signaling protein; HET: MSE; 2.20A {Arabidopsis
thaliana} PDB: 2nty_A* 2wbl_A (A:1-213,A:310-365)
Length = 269
Score = 25.9 bits (57), Expect = 4.7
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 34 RVETLSFDYGQRNKVELECRLCVRKKIVELMPKW 67
+++ D R K E++ L V IVE +P
Sbjct: 57 KLQPXPQDRQARWKKEIDWLLSVTDHIVEFVPSQ 90
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis,
amide bond forming enzyme, metal dependent, NEW fold,
GDP binding MCSG; HET: GDP; 1.35A {Archaeoglobus
fulgidus dsm 4304} (A:1-43,A:127-237)
Length = 154
Score = 25.4 bits (56), Expect = 6.3
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 123 AYRLGITNIVIGVCE----TDYSGYPDCRHDTIRAIETAI 158
+R G+ IG+ D+ G D + +
Sbjct: 75 CFRRGVVGFAIGISGVKAMKDWIGRKDLYGRELEVTVECV 114
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase,
ALAS, presequence, structure; NMR {Mus musculus} (A:)
Length = 49
Score = 25.3 bits (55), Expect = 7.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 196 ILEESHTCYLGKRDKRYEWGYGCNSCP 222
+L + T LGK K Y++ + CP
Sbjct: 13 VLSQGPTGLLGKVAKTYQFLFSIGRCP 39
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
1.79A {Cytophaga hutchinsonii atcc 33406} (A:274-519)
Length = 246
Score = 25.2 bits (54), Expect = 9.1
Identities = 24/207 (11%), Positives = 44/207 (21%), Gaps = 20/207 (9%)
Query: 1 MNDIIKKA--PSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRK 58
+ D +K+ +L SGG DSS C + + K E L
Sbjct: 21 LFDYXRKSRSKGFVLSLSGGADSSACAIXVAEXIRKGLKELGLTAFLQKSNXE-TLFDLP 79
Query: 59 KIVELMPKWKDSLGEDHILPLAILGDISHSSLTKN----VAMKIQDNNLPNTFVPGRNII 114
+ L + + L A + T +A I +
Sbjct: 80 ALQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQY 139
Query: 115 FLVFAATLAYRLGITNIVIGVC--------ETDYSGYPDCRHDTIRAIETAINL-----G 161
+ L I + + + I +
Sbjct: 140 KATIENVIERPLTWEKDDITLQNIQARGRAPIIWXLTNVKQALLITTSNRSEGDVGYATX 199
Query: 162 MESHVTVHTPLMWLKKYETWKLAQDIG 188
P+ + K +
Sbjct: 200 DGDTAGGIAPIAGVDKDFIRSWLRWAE 226
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.138 0.438
Gapped
Lambda K H
0.267 0.0453 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,894,143
Number of extensions: 82847
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 43
Length of query: 240
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 154
Effective length of database: 2,048,819
Effective search space: 315518126
Effective search space used: 315518126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)