RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781031|ref|YP_003065444.1| exsB protein [Candidatus
Liberibacter asiaticus str. psy62]
(240 letters)
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC
{Erwinia carotovora [TaxId: 554]}
Length = 230
Score = 163 bits (413), Expect = 1e-41
Identities = 87/227 (38%), Positives = 123/227 (54%), Gaps = 14/227 (6%)
Query: 11 ALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDS 70
A+++FSGGQDS+TCL AL +D V ++FDYGQR++ E+E + +K+ K
Sbjct: 4 AVVVFSGGQDSTTCLIQALQDYDDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVL-- 61
Query: 71 LGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITN 130
D L + +PNTFVPGRNI+FL A+ AY++G
Sbjct: 62 ---DVGLLNELATSSLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEA 118
Query: 131 IVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQ 190
++ GVCETD+SGYPDCR + ++A+ AI LG+ + TPLMWL K ETW LA
Sbjct: 119 VITGVCETDFSGYPDCRDEFVKALNQAIVLGIARDIRFETPLMWLNKAETWALADYYQQL 178
Query: 191 DLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQKGWMEFKEK 237
D + + TCY G + G GC C AC+LR G ++++
Sbjct: 179 D---TVRYHTLTCYNGIK------GDGCGQCAACHLRANGLAQYQKD 216
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI,
C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Length = 218
Score = 46.5 bits (109), Expect = 2e-06
Identities = 29/203 (14%), Positives = 56/203 (27%), Gaps = 25/203 (12%)
Query: 11 ALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDS 70
++L SGG DS + R VE + F + ++ + + K
Sbjct: 7 VMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTL 66
Query: 71 LGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITN 130
+ ++ + R ++ +A
Sbjct: 67 HLVPFT---------------EVQKTINKEIPSSYSMTVMRRMMM-RITERIAEERNALA 110
Query: 131 IVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQ 190
I G + TI ++ V PL+ + K E K+A++IG
Sbjct: 111 ITTGESLGQVASQTLDSMHTIN---------EVTNYPVIRPLITMDKLEIIKIAEEIGTY 161
Query: 191 DLVNLILEESHTCYLGKRDKRYE 213
D+ E+ T +
Sbjct: 162 DISIRPYEDCCTVFTPASPATKP 184
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 188
Score = 41.5 bits (96), Expect = 6e-05
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 11/133 (8%)
Query: 4 IIKKAPS---ALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKI 60
I+K P + FSGG D+S L W + + + GQ ++ + + +
Sbjct: 3 ILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRAMEY 62
Query: 61 VELMPKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAA 120
I L +++ P +
Sbjct: 63 GAENA--------RLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLV 114
Query: 121 TLAYRLGITNIVI 133
G+
Sbjct: 115 AAMKEDGVNIWGD 127
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 168
Score = 32.4 bits (72), Expect = 0.040
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 12 LLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKW 67
+L +SGG D+S L W ++ V + GQ++ ++ ++ +
Sbjct: 5 VLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQKDDFVAIKEKALKTGASKVYVED 60
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 165
Score = 27.8 bits (60), Expect = 0.77
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 12 LLLFSGGQDSSTCLSWALDRFD 33
+L +SGG D+S L W + +
Sbjct: 4 VLAYSGGLDTSIILKWLKETYR 25
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 27.7 bits (60), Expect = 0.82
Identities = 25/185 (13%), Positives = 48/185 (25%), Gaps = 21/185 (11%)
Query: 7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPK 66
+L SGG DSS V ++ L + +++
Sbjct: 19 GDDKVILGLSGGVDSSVTAMLLHRAI---------GKNLTCVFVDNGLLRLNEAEQVLDM 69
Query: 67 WKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRL 126
+ D G + + L+ + +
Sbjct: 70 FGDHFGLNIVHV-----PAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALK----LE 120
Query: 127 GITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGM---ESHVTVHTPLMWLKKYETWKL 183
+ + G D I++ N+G E + + PL L K E K+
Sbjct: 121 DVKWLAQGTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKI 180
Query: 184 AQDIG 188
++G
Sbjct: 181 GLELG 185
>d2phna1 d.340.1.1 (A:2-249) F420-0:gamma-glutamyl ligase CofE
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 27.8 bits (62), Expect = 0.85
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 4/42 (9%)
Query: 121 TLAYRLGITNIVIGVCE----TDYSGYPDCRHDTIRAIETAI 158
+R G+ IG+ D+ G D + +
Sbjct: 152 GRCFRRGVVGFAIGISGVKAMKDWIGRKDLYGRELEVTVECV 193
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 296
Score = 26.9 bits (58), Expect = 1.5
Identities = 27/154 (17%), Positives = 46/154 (29%), Gaps = 5/154 (3%)
Query: 13 LLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVE----LECRLCVRKKIVELMPKWK 68
+ SGG DSS + A F ++ T S N+ E + L ++ L
Sbjct: 38 IPLSGGLDSSLVTALASRHFKKLNTYSIGTELSNEFEFSQQVADALGTHHQMKILSETEV 97
Query: 69 DSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGI 128
+ + I I +S + + Q + + G +F L
Sbjct: 98 INGIIESIYYNEIFDGLSAEIQSGLFNVYRQAQGQVSCMLTGYGSDL-LFGGILKPGAQY 156
Query: 129 TNIVIGVCETDYSGYPDCRHDTIRAIETAINLGM 162
N + E Y T A I++
Sbjct: 157 DNPNQLLAEQVYRTRWTGEFATHGASCYGIDIRH 190
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 153
Score = 26.4 bits (58), Expect = 2.6
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 56 VRKKIVELMPKWKDSLGEDHILPL 79
V K++ L+ W D+ L
Sbjct: 113 VHDKVLNLIQSWADAFRSSPDLTG 136
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein
AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 171
Score = 26.0 bits (56), Expect = 3.2
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 129 TNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVH 169
T +++ V + YP+ RA E + + S+ +
Sbjct: 2 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDF 42
>d2gw6a1 c.52.2.1 (A:2-123) tRNA-splicing endonuclease subunit Sen15
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 26.0 bits (57), Expect = 3.3
Identities = 9/62 (14%), Positives = 26/62 (41%)
Query: 45 RNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLP 104
++ E+ C +++ L+ + G ++P I +SH+ + + + + P
Sbjct: 39 KSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRIREILKASRKLQGDP 98
Query: 105 NT 106
+
Sbjct: 99 DL 100
>d2chua1 c.92.2.4 (A:24-310) Enterochelin uptake protein CeuE
{Campylobacter jejuni [TaxId: 197]}
Length = 287
Score = 25.6 bits (55), Expect = 3.4
Identities = 11/129 (8%), Positives = 35/129 (27%), Gaps = 3/129 (2%)
Query: 113 IIFLVFAAT-LAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTP 171
++ L L + + V+GV + Y + + + E+ +
Sbjct: 30 VVILDLGILDTFDALKLNDKVVGVPAKNLPKYLQQFKNKPS-VGGVQQVDFEAINALKPD 88
Query: 172 LMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQKGW 231
L+ + ++ + + + L+ ++ + +
Sbjct: 89 LIIISGRQSKFYDKLKEIAPTLFVGLDNANFLS-SFENNVLSVAKLYGLEKEALEKISDI 147
Query: 232 MEFKEKYQD 240
EK +
Sbjct: 148 KNEIEKAKS 156
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 25.0 bits (53), Expect = 5.7
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 3 DIIKKA----PSALLLFSGGQDSSTCLSWALDRFDR 34
II++ + ++L+S G+DS+ L A F
Sbjct: 17 HIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFP 52
>d1t8da1 d.169.1.1 (A:1-143) Low affinity immunoglobulin epsilon Fc
receptor {Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 25.0 bits (53), Expect = 6.8
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 6/24 (25%)
Query: 215 GYGCNSCPACYLRQKGWMEFKEKY 238
G+ CN+CP + W+ F+ K
Sbjct: 2 GFVCNTCP------EKWINFQRKC 19
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 180
Score = 24.4 bits (52), Expect = 8.0
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 2/100 (2%)
Query: 1 MNDIIKKAPSALLLFSGGQD--SSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRK 58
+ +I + PS ++LF +S A+D +E + + +
Sbjct: 3 GSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGL 62
Query: 59 KIVELMPKWKDSLGEDHILPLAILGDISHSSLTKNVAMKI 98
+ E+ ++ G+ AI + + ++ KI
Sbjct: 63 NLNEIKNINPNNFGDFKYCLCAIKNTLDYLNIEPKTGFKI 102
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 226
Score = 24.5 bits (53), Expect = 9.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 12 LLLFSGGQDSSTCLSWALDRFDRVETL 38
+L+SGG+DS+ L WAL RV L
Sbjct: 7 AVLYSGGKDSNYALYWALKSGLRVRYL 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.438
Gapped
Lambda K H
0.267 0.0641 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 941,053
Number of extensions: 42486
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 22
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)