BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781031|ref|YP_003065444.1| exsB protein [Candidatus
Liberibacter asiaticus str. psy62]
         (240 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781031|ref|YP_003065444.1| exsB protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 240

 Score =  503 bits (1294), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   MNDIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKI 60
           MNDIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKI
Sbjct: 1   MNDIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKI 60

Query: 61  VELMPKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAA 120
           VELMPKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAA
Sbjct: 61  VELMPKWKDSLGEDHILPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAA 120

Query: 121 TLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYET 180
           TLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYET
Sbjct: 121 TLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYET 180

Query: 181 WKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQKGWMEFKEKYQD 240
           WKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQKGWMEFKEKYQD
Sbjct: 181 WKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQKGWMEFKEKYQD 240


>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1162

 Score = 24.6 bits (52), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 126 LGITNIVIG-VCETDYSGYPDCR 147
           +G   IVIG  CE DYSG   C+
Sbjct: 13  IGAGPIVIGQACEFDYSGTQACK 35


>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 23.1 bits (48), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 81  ILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLG 127
           +L D   SSL   + M++QD  L       + I+F+      A+RLG
Sbjct: 191 LLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLG 237


>gi|254780234|ref|YP_003064647.1| argininosuccinate synthase [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 404

 Score = 22.7 bits (47), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 12 LLLFSGGQDSSTCLSWALDRFDRVETLSF--DYGQRNKVEL---ECRLCVRKKI 60
          +L +SGG D+S  L W L     +E + F  D GQ  ++++   + RL   K++
Sbjct: 9  VLAYSGGLDTSIILKW-LQVEKGLEVIVFIADLGQGEELKIASDKARLLGAKEV 61


>gi|254780323|ref|YP_003064736.1| ATP/ADP translocase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 491

 Score = 22.3 bits (46), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 3   DIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSF 40
           D+IK  P AL +F G   +    +     FD  + ++F
Sbjct: 375 DVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAF 412


>gi|254780764|ref|YP_003065177.1| hypothetical protein CLIBASIA_03275 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 194

 Score = 21.9 bits (45), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 144 PDCRHDTIRAIETAINLG-------MESHVTVHTPLMWLKKYETWKLAQDIGG 189
           P  R  TI+A      +G       + +++T   P+  +K+YE W+  +D  G
Sbjct: 53  PLPRFVTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDG 105


>gi|254780367|ref|YP_003064780.1| ribonuclease protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 281

 Score = 21.9 bits (45), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 115 FLVFAATLAYRLGITNIVIGVCETDYSGYPDC 146
           F+VF A LA  LG    V  V +  +  +P+ 
Sbjct: 42  FIVFGANLAGFLGAHQFVPTVIDVVFGAWPEV 73


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.138    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,690
Number of Sequences: 1233
Number of extensions: 6673
Number of successful extensions: 16
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 8
length of query: 240
length of database: 328,796
effective HSP length: 71
effective length of query: 169
effective length of database: 241,253
effective search space: 40771757
effective search space used: 40771757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)