Query gi|254781032|ref|YP_003065445.1| hypothetical protein CLIBASIA_04670 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 118
No_of_seqs 107 out of 1297
Neff 6.6
Searched_HMMs 39220
Date Mon May 30 03:16:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781032.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00470 PTPS 6-pyruvoyl tetrah 100.0 1.4E-45 0 264.7 14.2 116 2-117 3-134 (135)
2 pfam01242 PTPS 6-pyruvoyl tetr 100.0 3E-42 0 246.8 14.1 114 2-117 1-120 (120)
3 COG0720 6-pyruvoyl-tetrahydrop 100.0 3.6E-38 9.2E-43 225.0 12.2 116 1-118 3-127 (127)
4 TIGR03367 queuosine_QueD queuo 100.0 2.6E-37 6.5E-42 220.5 10.6 92 2-95 1-92 (92)
5 TIGR00039 6PTHBS putative 6-py 100.0 1.9E-37 4.8E-42 221.2 9.4 117 1-117 3-150 (153)
6 TIGR03112 6_pyr_pter_rel 6-pyr 100.0 9.2E-34 2.3E-38 201.4 11.8 101 5-112 3-109 (113)
7 KOG4105 consensus 100.0 1.1E-28 2.8E-33 174.3 5.9 117 2-118 8-141 (141)
8 pfam03598 CdhC CO dehydrogenas 48.8 25 0.00064 17.2 5.1 72 35-106 49-152 (412)
9 PRK04456 acetyl-CoA decarbonyl 45.5 28 0.00072 16.9 5.6 71 35-105 50-150 (443)
10 KOG0258 consensus 43.3 22 0.00056 17.5 2.6 38 43-81 191-228 (475)
11 smart00268 ACTIN Actin. ACTIN 40.2 34 0.00088 16.5 3.5 50 45-94 67-123 (373)
12 PTZ00004 actin; Provisional 39.9 34 0.00086 16.5 3.2 50 45-94 73-129 (375)
13 cd00012 ACTIN Actin; An ubiqui 39.5 35 0.0009 16.4 3.3 50 45-94 67-123 (371)
14 TIGR02351 thiH thiazole biosyn 37.0 37 0.00095 16.3 3.0 65 52-118 19-94 (378)
15 PTZ00281 actin; Provisional 34.9 35 0.00089 16.5 2.6 50 45-94 73-129 (376)
16 PRK12374 putative dithiobiotin 34.9 42 0.0011 16.0 3.8 19 71-89 197-215 (231)
17 PTZ00280 actin; Provisional 30.2 51 0.0013 15.6 3.2 49 45-94 72-128 (416)
18 pfam00022 Actin Actin. 28.4 55 0.0014 15.4 3.0 50 45-94 65-121 (369)
19 TIGR02740 TraF-like TraF-like 23.8 54 0.0014 15.4 2.0 16 77-92 121-136 (306)
20 cd00651 TFold Tunnelling fold 23.4 69 0.0018 14.9 5.0 83 7-107 9-96 (122)
21 pfam07299 FBP Fibronectin-bind 21.5 49 0.0012 15.7 1.4 34 74-107 79-112 (208)
22 TIGR00019 prfA peptide chain r 21.2 22 0.00056 17.5 -0.5 51 3-56 185-237 (373)
23 PRK09529 bifunctional acetyl-C 20.5 79 0.002 14.5 5.1 71 36-106 351-453 (713)
No 1
>cd00470 PTPS 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.
Probab=100.00 E-value=1.4e-45 Score=264.71 Aligned_cols=116 Identities=36% Similarity=0.696 Sum_probs=106.8
Q ss_pred EEEEEEEEECCEECCCCCCC--------CCCCC--CCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHH-HHHHHHHHHH
Q ss_conf 79999999712122799987--------76356--7673489999999336887548862999999998-8877531332
Q gi|254781032|r 2 KITQAFTFEAAHRLPRVPKT--------HKCHR--MHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS-PLLEKLDHHC 70 (118)
Q Consensus 2 ~itk~~~F~aaH~l~~~~~~--------~kc~~--lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~-~i~~~lDH~~ 70 (118)
.|||+|+|+|||||++++++ |||+| +|||||+|+|+++|++++..||||||++||++++ .|+++|||++
T Consensus 3 titk~~~F~AaHrl~~~~~s~~~n~~~~GkC~n~~lHGHny~veV~v~g~~~~~~GmviDf~~Lk~~v~~~I~~~lDH~~ 82 (135)
T cd00470 3 TLTRRFSFSACHRLHSPPLSDEENLEVFGKCNNPNGHGHNYKVEVTVRGEIDPVTGMVMNLTDLKKAIEEAIMKPLDHKN 82 (135)
T ss_pred EEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEHHHHHHHHHHHHHCCCCHHH
T ss_conf 79999999735646899857334620267789989879885999999841277667587799999999988623478778
Q ss_pred CCCCCC-C--CCCCHHHHHHHHHHHHHHHCCC--CEEEEEEECCCCEEEEEC
Q ss_conf 033554-3--3665568999999999851142--127999985995599750
Q gi|254781032|r 71 LNEIEE-L--ENPTAENIAIWIWKRLSTSLSI--LSSVRVYETPMSWVEYQG 117 (118)
Q Consensus 71 Lnd~~~-~--~nPT~Enia~~i~~~l~~~l~~--l~~V~v~Et~~~~a~Y~G 117 (118)
||++.+ | .+||+||||+|||++|++.+|. |.+|+|||||++||+|+|
T Consensus 83 LN~~~~~f~~~~PTaEniA~~i~~~l~~~l~~~~l~~V~l~ET~~s~~~Y~G 134 (135)
T cd00470 83 LDDDVPYFADVVSTTENLAVYIWDNLQKVLPVGLLYEVKVHETDKNIVVYRG 134 (135)
T ss_pred HHCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEC
T ss_conf 7036502304776199999999999985488563589999968997799937
No 2
>pfam01242 PTPS 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl tetrahydrobiopterin synthase catalyses the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin, the second of three enzymatic steps in the synthesis of tetrahydrobiopterin from GTP. The functional enzyme is a hexamer of identical subunits.
Probab=100.00 E-value=3e-42 Score=246.83 Aligned_cols=114 Identities=52% Similarity=0.932 Sum_probs=107.5
Q ss_pred EEEEEEEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCC--C
Q ss_conf 79999999712122799987763567673489999999336887548862999999998887753133203355433--6
Q gi|254781032|r 2 KITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEIEELE--N 79 (118)
Q Consensus 2 ~itk~~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~~~--n 79 (118)
+|+|++.|+|||+|++. .|||+++|||||+|+|+++|+.+++.|||+||+++|+++++|+++|||++||++++|. |
T Consensus 1 ~i~k~~~F~aaH~l~~~--~g~c~~lHGH~y~v~v~v~~~~l~~~g~viDf~~lk~~~~~i~~~lDH~~Ln~~~~~~~~~ 78 (120)
T pfam01242 1 TITKRFRFDAAHRLPGY--PGKCSRLHGHNYRVEVTVEGEELDETGMVVDFGELKKILKEVLERLDHKLLNDVPEFAGLN 78 (120)
T ss_pred CCEEEEEEECCEECCCC--CCCCCCCCCCEEEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHCHHHHCCCCCCCCCC
T ss_conf 90799999834486999--9986887187189999999646598989987999999999999985857544652115689
Q ss_pred CCHHHHHHHHHHHHHHHCC----CCEEEEEEECCCCEEEEEC
Q ss_conf 6556899999999985114----2127999985995599750
Q gi|254781032|r 80 PTAENIAIWIWKRLSTSLS----ILSSVRVYETPMSWVEYQG 117 (118)
Q Consensus 80 PT~Enia~~i~~~l~~~l~----~l~~V~v~Et~~~~a~Y~G 117 (118)
||+||||+|||+++++.+. .+.+|+|||||++||+|+|
T Consensus 79 pT~E~la~~i~~~l~~~l~~~~~~l~~V~v~Et~~~~a~y~~ 120 (120)
T pfam01242 79 PTAENIARYIWDRLKPRLNGGGVRLSKVRLWETPTNWAEYRG 120 (120)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEC
T ss_conf 759999999999999875117947999999955991999969
No 3
>COG0720 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
Probab=100.00 E-value=3.6e-38 Score=225.02 Aligned_cols=116 Identities=50% Similarity=0.822 Sum_probs=105.9
Q ss_pred CEEEEEEEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCC--C
Q ss_conf 97999999971212279998776356767348999999933688754886299999999888775313320335543--3
Q gi|254781032|r 1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEIEEL--E 78 (118)
Q Consensus 1 m~itk~~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~~--~ 78 (118)
|+|+++++|+|||+|+..+ +||+++|||||.|+|+++|+.+++.|||+||++||++++.+++.|||++||++.++ .
T Consensus 3 ~~i~~~f~F~AaH~l~~~~--~kC~~lHGHty~veV~i~ge~~d~~Gmv~DF~~lk~~~k~i~~~~DH~~Ln~~~~~~~~ 80 (127)
T COG0720 3 RGITKRFSFDAAHRLPGHP--GKCGRLHGHTYKVEVEIEGEELDEHGMVVDFGELKKAVKEILDELDHKLLNDIEEFDKE 80 (127)
T ss_pred EEEEEEEEEECCEECCCCC--CCCCCCCCCCEEEEEEEEEEEECCCCEEEEHHHHHHHHHHHHHCCCHHHHCCCCCCCCC
T ss_conf 8999978997420536899--85457778326999999864314778899989999999986641581665476543556
Q ss_pred CCCHHHHHHHHHHHHHHHCC---CCEE--EEEE--ECCCCEEEEECC
Q ss_conf 66556899999999985114---2127--9999--859955997509
Q gi|254781032|r 79 NPTAENIAIWIWKRLSTSLS---ILSS--VRVY--ETPMSWVEYQGF 118 (118)
Q Consensus 79 nPT~Enia~~i~~~l~~~l~---~l~~--V~v~--Et~~~~a~Y~G~ 118 (118)
+||+||+|+|||++++..+| +.+. ++.| |||++||+|++.
T Consensus 81 ~pt~E~~a~~i~~~~~~~l~~~~~~s~~~~~~~~~Et~~~~~e~~~~ 127 (127)
T COG0720 81 NPTAENIAKWIFDRLKVVLPDEAETSAEELREYVAETPTSGAEYRKR 127 (127)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEEEECCCCCEEEEEEC
T ss_conf 73399999999999986546612456521023354179731899649
No 4
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=100.00 E-value=2.6e-37 Score=220.46 Aligned_cols=92 Identities=48% Similarity=0.906 Sum_probs=88.2
Q ss_pred EEEEEEEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 79999999712122799987763567673489999999336887548862999999998887753133203355433665
Q gi|254781032|r 2 KITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEIEELENPT 81 (118)
Q Consensus 2 ~itk~~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~~~nPT 81 (118)
+|+|+|+|+|||+|++++ |||+++|||||+|+|+++|+.+++.|||+||++||+++++|++.|||++|||+++|+|||
T Consensus 1 ~i~k~f~F~aAH~l~~~~--gkC~~lHGH~y~v~v~~~g~~l~~~G~vvDf~~lk~~~~~i~~~lDH~~Lnd~~~~~npT 78 (92)
T TIGR03367 1 EITKEFTFDAAHRLPGYP--GKCANLHGHTYKVEVTVSGEVLDEAGMVMDFSDLKAIVKEVVDRLDHALLNDVPGLENPT 78 (92)
T ss_pred CEEEEEEEECCCCCCCCC--CCCCCCCCCEEEEEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHCHHHHHCCCCCCCCC
T ss_conf 914999997673668999--886465163599999999401687876975999999999999986624354257877989
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 56899999999985
Q gi|254781032|r 82 AENIAIWIWKRLST 95 (118)
Q Consensus 82 ~Enia~~i~~~l~~ 95 (118)
+||||+|||++|++
T Consensus 79 ~Enla~~i~~~l~~ 92 (92)
T TIGR03367 79 AENLARWIYDRLKA 92 (92)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999739
No 5
>TIGR00039 6PTHBS putative 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007116 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity , . The function of the bacterial branch of the sequence lineage appears not to have been established. ; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0006729 tetrahydrobiopterin biosynthetic process.
Probab=100.00 E-value=1.9e-37 Score=221.16 Aligned_cols=117 Identities=43% Similarity=0.768 Sum_probs=105.7
Q ss_pred CEEEEEEEEECCEECCCCCCC--------CCCC--CCCCCCEEEEEEEEE----CCCCCCEEEEEHHHHHHHHHHHHHH-
Q ss_conf 979999999712122799987--------7635--676734899999993----3688754886299999999888775-
Q gi|254781032|r 1 MKITQAFTFEAAHRLPRVPKT--------HKCH--RMHGHSYRVELVMEG----DVDPKTGFVDDFFNIEQYFSPLLEK- 65 (118)
Q Consensus 1 m~itk~~~F~aaH~l~~~~~~--------~kc~--~lHGH~y~v~v~~~g----~~~~~~G~viDf~~lk~~~~~i~~~- 65 (118)
+.|+|+++|+|||+||+.+.+ |||+ ++|||||.|+|+|.| +.++++||||||.+||++++.+++.
T Consensus 3 ~~~~~~~sFsAAH~lp~~~~gd~En~~~FGKC~N~~~HGH~Y~v~V~v~Gd~L~~~~~~~GmV~DF~~LK~~v~~~~~~~ 82 (153)
T TIGR00039 3 FTLSKEFSFSAAHRLPGHSEGDAENLEVFGKCGNSRLHGHSYKVEVEVSGDDLYERDPKTGMVMDFSDLKKIVKEVIDEP 82 (153)
T ss_pred EEEEECCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHCCC
T ss_conf 68630430332110778998722011015552888335501289999852322111687220663899999998873363
Q ss_pred HHHHHCCCCCC---------CCCCCHHHHHHHHHHHHHHHCC------CCEEEEEEECCCC-EEEEEC
Q ss_conf 31332033554---------3366556899999999985114------2127999985995-599750
Q gi|254781032|r 66 LDHHCLNEIEE---------LENPTAENIAIWIWKRLSTSLS------ILSSVRVYETPMS-WVEYQG 117 (118)
Q Consensus 66 lDH~~Lnd~~~---------~~nPT~Enia~~i~~~l~~~l~------~l~~V~v~Et~~~-~a~Y~G 117 (118)
|||++|++... +.+||+|++|.|||++++..+. .+..|.+.||+++ .+.|+|
T Consensus 83 LDH~~l~~~~~~f~sqiatL~~~~Tse~~a~~i~~~~~~~~~~~~nkP~~~~v~~~~t~~~~i~~Y~~ 150 (153)
T TIGR00039 83 LDHKLLNDDVNEFASQIATLLEVPTSENVAVYIFDNLKEVLVPLENKPDLVKVKIEETPAEDIVIYRG 150 (153)
T ss_pred CCHHHCCCCCCCCHHHEEEEECCCCCEEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEECC
T ss_conf 68326356777300211211014574001202577648751543378737898514588565577427
No 6
>TIGR03112 6_pyr_pter_rel 6-pyruvoyl tetrahydropterin synthase-related domain. Members of this family are small proteins, or small domains of larger proteins, that occur in certain Firmicutes in the same regions as members of families TIGR03110 and TIGR03111. Members of TIGR03110 resemble exosortase, a proposed protein sorting transpeptidase (see TIGR02602). TIGR03111 represents a small clade among the group 2 glycosyltransferases. Members of the current protein family resemble eukaryotic known and prokaryotic predicted 6-pyruvoyl tetrahydropterin synthases.
Probab=100.00 E-value=9.2e-34 Score=201.45 Aligned_cols=101 Identities=24% Similarity=0.365 Sum_probs=92.0
Q ss_pred EEEEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCH
Q ss_conf 99999712122799987763567673489999999336887548862999999998887753133203355433--6655
Q gi|254781032|r 5 QAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEIEELE--NPTA 82 (118)
Q Consensus 5 k~~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~~~--nPT~ 82 (118)
-+++|+|||.|. ..|+|+++|||||+|+|++.++.+ ++|||.+||+.++.++++|||++|||+++|+ |||+
T Consensus 3 ~kf~fnAaH~l~---y~G~c~~lHgHtw~v~v~v~~~~~----~~idF~~lk~~v~~vl~~ldh~~LNel~pF~~~NPT~ 75 (113)
T TIGR03112 3 FKFYLNASHSII---INGVRGNKHPHTWEITIFVIKKED----KFILFNDVEKKVEKYLKPYQNKYLNDLEPFDKINPTL 75 (113)
T ss_pred EEEEEECEEEEE---ECCCCCCCCCCCEEEEEEEEECCC----CEEEHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCH
T ss_conf 799984533578---279626876986799999980888----6872999999999999875751010487535689878
Q ss_pred HHHHHHHHHHHHHHCCC----CEEEEEEECCCCE
Q ss_conf 68999999999851142----1279999859955
Q gi|254781032|r 83 ENIAIWIWKRLSTSLSI----LSSVRVYETPMSW 112 (118)
Q Consensus 83 Enia~~i~~~l~~~l~~----l~~V~v~Et~~~~ 112 (118)
||||+|||++|+..|.. |.+|+|||||+..
T Consensus 76 ENia~yi~~~l~~~L~~~~v~l~~v~v~EtPtr~ 109 (113)
T TIGR03112 76 ENIGDYFFDEIKKLLKEKGWKLHSIEISETPTRT 109 (113)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCEE
T ss_conf 9999999999998756077099999999899456
No 7
>KOG4105 consensus
Probab=99.95 E-value=1.1e-28 Score=174.27 Aligned_cols=117 Identities=34% Similarity=0.665 Sum_probs=103.9
Q ss_pred EEEEEEEEECCEECC--------CCCCCCCCCC--CCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHH-HHHHHHHH
Q ss_conf 799999997121227--------9998776356--767348999999933688754886299999999888-77531332
Q gi|254781032|r 2 KITQAFTFEAAHRLP--------RVPKTHKCHR--MHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPL-LEKLDHHC 70 (118)
Q Consensus 2 ~itk~~~F~aaH~l~--------~~~~~~kc~~--lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i-~~~lDH~~ 70 (118)
.++|+.+|+|||||. |..-.|||+| .|||+|.|+|++.|++|+.+|||++..+||+.++.+ ..+|||++
T Consensus 8 ~~~Rr~sFSA~HRLhS~~LSDaENle~FGKCNN~nGHGHNY~v~vtvrGeiDp~tGMV~nla~LKk~me~vim~~ldhkn 87 (141)
T KOG4105 8 TMERRDSFSAAHRLHSEKLSDAENLETFGKCNNSNGHGHNYVVKVTVRGEIDPTTGMVYNLAKLKKEMELVIMTRLDHKN 87 (141)
T ss_pred EEEEEHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCC
T ss_conf 66652034577764440107256668761367998887556999998554278643167799999999999714123334
Q ss_pred CC-CCCCCCC--CCHHHHHHHHHHHHHHHCCC---CEEEEEEECCCCEEEEECC
Q ss_conf 03-3554336--65568999999999851142---1279999859955997509
Q gi|254781032|r 71 LN-EIEELEN--PTAENIAIWIWKRLSTSLSI---LSSVRVYETPMSWVEYQGF 118 (118)
Q Consensus 71 Ln-d~~~~~n--PT~Enia~~i~~~l~~~l~~---l~~V~v~Et~~~~a~Y~G~ 118 (118)
|+ |++.|.+ .|+||+|.|||+.|+..++. |.+|+++|||++-..|+|-
T Consensus 88 ld~dv~yfa~tvSTtENvAvYiwdnl~~vl~~p~vLYkVki~ETpkNI~~YkG~ 141 (141)
T KOG4105 88 LDKDVEYFATTVSTTENVAVYIWDNLKSVLSNPSVLYKVKIEETPKNIFTYKGC 141 (141)
T ss_pred CCCCCHHHCCCCCCCCCEEEEEHHHHHHHCCCCCEEEEEEEEECCCCEEEECCC
T ss_conf 334534441666554317752345488644797368999988478844874489
No 8
>pfam03598 CdhC CO dehydrogenase/acetyl-CoA synthase complex beta subunit.
Probab=48.75 E-value=25 Score=17.23 Aligned_cols=72 Identities=21% Similarity=0.327 Sum_probs=48.2
Q ss_pred EEEEEECCCCC--------CEEEEEH--HHHHHHHHHHHHHHHHHHCCCCCCCC-------------------CCCHHHH
Q ss_conf 99999336887--------5488629--99999998887753133203355433-------------------6655689
Q gi|254781032|r 35 ELVMEGDVDPK--------TGFVDDF--FNIEQYFSPLLEKLDHHCLNEIEELE-------------------NPTAENI 85 (118)
Q Consensus 35 ~v~~~g~~~~~--------~G~viDf--~~lk~~~~~i~~~lDH~~Lnd~~~~~-------------------nPT~Eni 85 (118)
.|++.|+..++ .|++++. ..+++.+++++++--|.++|-+.++- .=+.++|
T Consensus 49 ki~viGPdi~~~eeG~~~Plgi~v~vaG~~mq~D~EpVlERr~H~~~Ny~eG~mHl~QRd~~WiRisK~a~~KGf~l~hi 128 (412)
T pfam03598 49 KVEVIGPDIDDMEEGSRLPLAIIVEVAGKKMQEDFEPVLERRIHEFLNYIEGVMHLNQRDIIWIRISKDAFAKGFRLEHI 128 (412)
T ss_pred EEEEECCCHHHCCCCCCCCEEEEEEECCCHHCHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEHHHHHCCCCHHHH
T ss_conf 47996888453455676653999996170002457778899999888876552442566159999617788668768899
Q ss_pred HHHHHHHHHHHC-CCCE--EEEEE
Q ss_conf 999999998511-4212--79999
Q gi|254781032|r 86 AIWIWKRLSTSL-SILS--SVRVY 106 (118)
Q Consensus 86 a~~i~~~l~~~l-~~l~--~V~v~ 106 (118)
.+-++.+++..+ |-+. +|+++
T Consensus 129 G~vl~~~~k~ef~~ivdk~qvti~ 152 (412)
T pfam03598 129 GKALHAKFKQEFGPIIDKVQVTIY 152 (412)
T ss_pred HHHHHHHHHHHHHHHHHHEEEEEE
T ss_conf 999999998776755641689999
No 9
>PRK04456 acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed
Probab=45.48 E-value=28 Score=16.94 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=49.4
Q ss_pred EEEEEECCCCC--------CEEEEEH--HHHHHHHHHHHHHHHHHHCCCCCCCC--------------------CCCHHH
Q ss_conf 99999336887--------5488629--99999998887753133203355433--------------------665568
Q gi|254781032|r 35 ELVMEGDVDPK--------TGFVDDF--FNIEQYFSPLLEKLDHHCLNEIEELE--------------------NPTAEN 84 (118)
Q Consensus 35 ~v~~~g~~~~~--------~G~viDf--~~lk~~~~~i~~~lDH~~Lnd~~~~~--------------------nPT~En 84 (118)
.|++.|+..++ .|++++. ..++..+++++++--|.++|-+.++- --|.++
T Consensus 50 ki~viGPdi~~meeG~~~Plgi~v~VaG~~mq~D~E~VlERriH~~~Ny~eG~mHl~QRd~~W~RisK~a~~KGf~sl~h 129 (443)
T PRK04456 50 KVTVIGPDLKDMEEGKTYPFAIIVEVAGEKLEEDLEGVIERRIHEFCNYIQGFMHLNQRYDIWMRVSKDAHAKGLRSLEH 129 (443)
T ss_pred EEEEECCCHHHCCCCCCCCEEEEEEECCCHHCHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEHHHHHHHHHHHHH
T ss_conf 47996887453455676653999995170003467778899999888876552442566258999608888603155999
Q ss_pred HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999999999851142127999
Q gi|254781032|r 85 IAIWIWKRLSTSLSILSSVRV 105 (118)
Q Consensus 85 ia~~i~~~l~~~l~~l~~V~v 105 (118)
|.+-+..+++..+|-+.++.|
T Consensus 130 iG~~l~~~~k~efpiidk~qV 150 (443)
T PRK04456 130 LGKALMMLFKNELPIIEKIQV 150 (443)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
T ss_conf 999999998754774026899
No 10
>KOG0258 consensus
Probab=43.34 E-value=22 Score=17.53 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=28.8
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 887548862999999998887753133203355433665
Q gi|254781032|r 43 DPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEIEELENPT 81 (118)
Q Consensus 43 ~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~~~nPT 81 (118)
+.++||-+|+.+|++.+++..+..+-+.|--+.+ .|||
T Consensus 191 dEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINP-GNPT 228 (475)
T KOG0258 191 DEESNWSLDVAELERSVDEARKGINPRALVVINP-GNPT 228 (475)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCC
T ss_conf 3344777889999999999861688418999779-9961
No 11
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=40.23 E-value=34 Score=16.49 Aligned_cols=50 Identities=16% Similarity=0.323 Sum_probs=32.7
Q ss_pred CCEEEEEHHHHHHHHHHHHHH-H-----HHHHCCCCCCCCC-CCHHHHHHHHHHHHH
Q ss_conf 754886299999999888775-3-----1332033554336-655689999999998
Q gi|254781032|r 45 KTGFVDDFFNIEQYFSPLLEK-L-----DHHCLNEIEELEN-PTAENIAIWIWKRLS 94 (118)
Q Consensus 45 ~~G~viDf~~lk~~~~~i~~~-l-----DH~~Lnd~~~~~n-PT~Enia~~i~~~l~ 94 (118)
+.|++.|+..++++++.+... | ||..|-..+.+.. ..-|.++..+||.+.
T Consensus 67 ~~G~i~d~d~~e~i~~~~~~~~l~~~~~~~pvlltep~~~~~~~r~~~~e~lFE~~~ 123 (373)
T smart00268 67 EHGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFN 123 (373)
T ss_pred CCCEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 369867899999999999787508896678447742799999999999999987669
No 12
>PTZ00004 actin; Provisional
Probab=39.87 E-value=34 Score=16.53 Aligned_cols=50 Identities=14% Similarity=0.325 Sum_probs=32.6
Q ss_pred CCEEEEEHHHHHHHHHHHHHH-H-----HHHHCCCCCCCCCC-CHHHHHHHHHHHHH
Q ss_conf 754886299999999888775-3-----13320335543366-55689999999998
Q gi|254781032|r 45 KTGFVDDFFNIEQYFSPLLEK-L-----DHHCLNEIEELENP-TAENIAIWIWKRLS 94 (118)
Q Consensus 45 ~~G~viDf~~lk~~~~~i~~~-l-----DH~~Lnd~~~~~nP-T~Enia~~i~~~l~ 94 (118)
+.|++.|+..++++++.+... | ||..|-.-+++..+ --|+++..+||.+.
T Consensus 73 ~~g~i~d~d~~e~~~~~~~~~~L~v~~~e~pvlltE~~~~~~~~r~~~~e~lFE~~~ 129 (375)
T PTZ00004 73 EHGIVTNWDDMEKIWHHTFYNELRVNPEEHPVLLTEAPMNPKQNREKMTQIMFETFN 129 (375)
T ss_pred CCCEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 589675899999999999642148896548559961788878999999999874068
No 13
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=39.46 E-value=35 Score=16.42 Aligned_cols=50 Identities=20% Similarity=0.340 Sum_probs=32.9
Q ss_pred CCEEEEEHHHHHHHHHHHHHH-H-----HHHHCCCCCCCCCCC-HHHHHHHHHHHHH
Q ss_conf 754886299999999888775-3-----133203355433665-5689999999998
Q gi|254781032|r 45 KTGFVDDFFNIEQYFSPLLEK-L-----DHHCLNEIEELENPT-AENIAIWIWKRLS 94 (118)
Q Consensus 45 ~~G~viDf~~lk~~~~~i~~~-l-----DH~~Lnd~~~~~nPT-~Enia~~i~~~l~ 94 (118)
+.|+++|+..++.+++.+... + ||..|--.+.+..++ -|.++.++||.+.
T Consensus 67 ~~G~i~d~d~~e~~~~~~~~~~l~~~~~~~~vll~ep~~~~~~~r~~~~e~lFE~~~ 123 (371)
T cd00012 67 EHGIVVDWDDMEKIWDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFN 123 (371)
T ss_pred CCCEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 178656899999999999640168885558447754899989999999999997669
No 14
>TIGR02351 thiH thiazole biosynthesis protein ThiH; InterPro: IPR012726 Members of this protein family are the ThiH proteins involved in thiamine biosynthesis. They are homologues of the BioB protein of biotin biosynthesis. Genes encoding these proteins are generally found in operons with other thiamin biosynthesis genes. ; GO: 0005506 iron ion binding, 0051539 4 iron 4 sulfur cluster binding, 0009228 thiamin biosynthetic process.
Probab=37.02 E-value=37 Score=16.30 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=38.4
Q ss_pred HHHHHH-HHHHHHHHHHHHHCCCCCCCCC----CCHHHHHHHHHHHHHHHCCCCEEEEE------EECCCCEEEEECC
Q ss_conf 999999-9988877531332033554336----65568999999999851142127999------9859955997509
Q gi|254781032|r 52 FFNIEQ-YFSPLLEKLDHHCLNEIEELEN----PTAENIAIWIWKRLSTSLSILSSVRV------YETPMSWVEYQGF 118 (118)
Q Consensus 52 f~~lk~-~~~~i~~~lDH~~Lnd~~~~~n----PT~Enia~~i~~~l~~~l~~l~~V~v------~Et~~~~a~Y~G~ 118 (118)
+...+. .|+..+.+=.|..|+|...|=. |=.|.||+--..--..+... .|.| .--+.|.|+|.||
T Consensus 19 ~~~~~~~DVeraL~~~e~~~~~D~~aLlSPaA~~YLE~mA~~a~~lt~~rFG~--ti~Lf~PLYlSN~C~N~C~YCGF 94 (378)
T TIGR02351 19 IYSFTAADVERALNKREHLSLEDFLALLSPAAEPYLEEMAQKAKKLTRKRFGN--TISLFTPLYLSNYCSNKCVYCGF 94 (378)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC--CCEEHHHHHHHHCCCCCCCCCCC
T ss_conf 88742899999724576789888863114301068999999999873876378--10001334565414875210465
No 15
>PTZ00281 actin; Provisional
Probab=34.87 E-value=35 Score=16.46 Aligned_cols=50 Identities=16% Similarity=0.360 Sum_probs=32.8
Q ss_pred CCEEEEEHHHHHHHHHHHH-HHH-----HHHHCCCCCCCCCC-CHHHHHHHHHHHHH
Q ss_conf 7548862999999998887-753-----13320335543366-55689999999998
Q gi|254781032|r 45 KTGFVDDFFNIEQYFSPLL-EKL-----DHHCLNEIEELENP-TAENIAIWIWKRLS 94 (118)
Q Consensus 45 ~~G~viDf~~lk~~~~~i~-~~l-----DH~~Lnd~~~~~nP-T~Enia~~i~~~l~ 94 (118)
+.|+++|+..++++++.+. +.| ||..|-.-+++..| .-|.++..+||.+.
T Consensus 73 ~~g~i~dwd~~e~~~~~~~~~~l~v~p~e~pvllte~~~~~~~~Re~~~eilFE~~~ 129 (376)
T PTZ00281 73 EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 129 (376)
T ss_pred CCCEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 578477899999999999631138883438326762698988999999999850069
No 16
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=34.87 E-value=42 Score=16.01 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=7.9
Q ss_pred CCCCCCCCCCCHHHHHHHH
Q ss_conf 0335543366556899999
Q gi|254781032|r 71 LNEIEELENPTAENIAIWI 89 (118)
Q Consensus 71 Lnd~~~~~nPT~Enia~~i 89 (118)
|-.+|.+++|+.+.++.|+
T Consensus 197 LG~iP~l~~~~~~~~~~~l 215 (231)
T PRK12374 197 IGELPYLPRAEQRELGQYI 215 (231)
T ss_pred EEECCCCCCCCHHHHHHHC
T ss_conf 8868999998989999753
No 17
>PTZ00280 actin; Provisional
Probab=30.22 E-value=51 Score=15.58 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=33.0
Q ss_pred CCEEEEEHHHHHHHHHHHH-HHH-----HHHHCCCCCCCCCCC--HHHHHHHHHHHHH
Q ss_conf 7548862999999998887-753-----133203355433665--5689999999998
Q gi|254781032|r 45 KTGFVDDFFNIEQYFSPLL-EKL-----DHHCLNEIEELENPT--AENIAIWIWKRLS 94 (118)
Q Consensus 45 ~~G~viDf~~lk~~~~~i~-~~l-----DH~~Lnd~~~~~nPT--~Enia~~i~~~l~ 94 (118)
+.|+|.|...++++++.+. +.| ||..|-.-+++ ||. -|.++..+||.+.
T Consensus 72 ~~G~I~dwd~~e~iw~~~~~~~L~i~p~e~~vlltE~~~-~~~~~Rek~~eilFE~f~ 128 (416)
T PTZ00280 72 KHGIVEDWDKMERIWQHCIYKYLRVEPEEHGFILTEPPA-NPPENREYTAEVMFETFG 128 (416)
T ss_pred CCCEECCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCC-CCHHHHHHHHHHHHHHCC
T ss_conf 169867899999999998420247687778668422898-988999999999885157
No 18
>pfam00022 Actin Actin.
Probab=28.43 E-value=55 Score=15.40 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=31.1
Q ss_pred CCEEEEEHHHHHHHHHHHHHH-H-----HHHHCCCCCCCCCC-CHHHHHHHHHHHHH
Q ss_conf 754886299999999888775-3-----13320335543366-55689999999998
Q gi|254781032|r 45 KTGFVDDFFNIEQYFSPLLEK-L-----DHHCLNEIEELENP-TAENIAIWIWKRLS 94 (118)
Q Consensus 45 ~~G~viDf~~lk~~~~~i~~~-l-----DH~~Lnd~~~~~nP-T~Enia~~i~~~l~ 94 (118)
+.|+++|+..++++++.+..+ | ||..|-..+.+..| --|.++..+||.+.
T Consensus 65 ~~G~i~d~d~~e~i~~~~~~~~l~~~~~~~~vlltep~~~~~~~r~~~~eilFE~~~ 121 (369)
T pfam00022 65 EDGIVENWDAMEKIWEHTFFEELRVDPEEHPLLLTEPPLNPPANREKATEIMFETFG 121 (369)
T ss_pred CCCEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 168236899999999998555228896558657863699989999999999983069
No 19
>TIGR02740 TraF-like TraF-like protein; InterPro: IPR014111 This entry contains TraF-like proteins that are related to the F-type conjugation system pilus assembly proteins TraF (IPR014110 from INTERPRO)and TrbB (IPR014109 from INTERPRO) both of which exhibit a thioredoxin fold . The proteins in this entry have the same length and architecture as TraF, but lack the CXXC-motif found in TrbB that is believed to be responsible for the disulphide isomerase activity..
Probab=23.85 E-value=54 Score=15.44 Aligned_cols=16 Identities=31% Similarity=0.677 Sum_probs=13.4
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 3366556899999999
Q gi|254781032|r 77 LENPTAENIAIWIWKR 92 (118)
Q Consensus 77 ~~nPT~Enia~~i~~~ 92 (118)
..|||-||+.+|++-|
T Consensus 121 id~Pt~ENv~aY~~~Q 136 (306)
T TIGR02740 121 IDNPTPENVRAYLEAQ 136 (306)
T ss_pred CCCCCHHHHHHHHHHH
T ss_conf 2488888999999999
No 20
>cd00651 TFold Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl tetrahydropterin synthetase (PTPS), and uricase (UO,uroate/urate oxidase). They bind to substrates belonging to the purine or pterin families, and share a fold-related binding site with a glutamate or glutamine residue anchoring the substrate and a lot of conserved interactions. They also share a similar oligomerization mode: several T-folds join together to form a beta(2n)alpha(n) barrel, then two barrels join together in a head-to-head fashion to made up the native enzymes. The functional enzyme is a tetramer for UO, a hexamer for PTPS, an octamer for DHNA/DHNTPE and a decamer for GTPCH-1. The substrate is located in a deep and narrow pocket at the interface between monomers. In PTPS, the active site is located at the interface of thr
Probab=23.38 E-value=69 Score=14.88 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=46.7
Q ss_pred EEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCC--C---CEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99971212279998776356767348999999933688--7---548862999999998887753133203355433665
Q gi|254781032|r 7 FTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDP--K---TGFVDDFFNIEQYFSPLLEKLDHHCLNEIEELENPT 81 (118)
Q Consensus 7 ~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~--~---~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~~~nPT 81 (118)
+.|.+-|=+. ++.+.-|+.+.+.|++.-+... . --..+++..+-+.++.+.+. . .+-.|+
T Consensus 9 l~~~~~~G~~------~~e~~~~q~~~vdV~~~~d~~~a~~~d~l~~t~~y~~v~~~v~~~~~~-------~--~liE~l 73 (122)
T cd00651 9 LLKVTRLGFV------TLERTVGQIFEVDVTLSWDGKKAAASDDVATDTVYNTIYRLAKEYVEG-------S--QLIERL 73 (122)
T ss_pred CEEEEEEECC------HHHHHCCCEEEEEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHCC-------C--CHHHHH
T ss_conf 7999997088------899830987999999996373001558888738999999999999736-------3--269999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 56899999999985114212799998
Q gi|254781032|r 82 AENIAIWIWKRLSTSLSILSSVRVYE 107 (118)
Q Consensus 82 ~Enia~~i~~~l~~~l~~l~~V~v~E 107 (118)
+|++|..+++++.+ .+..|+|..
T Consensus 74 ae~ia~~i~~~f~~---~~~~v~v~v 96 (122)
T cd00651 74 AEEIAYLIAEHFLS---SVAEVKVEE 96 (122)
T ss_pred HHHHHHHHHHHHHC---CCCEEEEEE
T ss_conf 99999999985135---453899999
No 21
>pfam07299 FBP Fibronectin-binding protein (FBP). This family consists of several bacterial fibronectin-binding proteins which are thought to be involved in virulence in Listeria species.
Probab=21.45 E-value=49 Score=15.67 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=24.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 5543366556899999999985114212799998
Q gi|254781032|r 74 IEELENPTAENIAIWIWKRLSTSLSILSSVRVYE 107 (118)
Q Consensus 74 ~~~~~nPT~Enia~~i~~~l~~~l~~l~~V~v~E 107 (118)
+-||+.||..-|.+-|-..=+-++|.+..+.+.+
T Consensus 79 V~pF~~~s~~ql~KLF~K~KKLK~P~~~~~d~k~ 112 (208)
T pfam07299 79 VIPFPSPTTQQLKKLFRKVKKLKIPNLEELDLKE 112 (208)
T ss_pred HCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCC
T ss_conf 5088999989999982553502799820212145
No 22
>TIGR00019 prfA peptide chain release factor 1; InterPro: IPR004373 This family describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognise and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cut-off for this model. RF-1 does not have a translational frameshift.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=21.15 E-value=22 Score=17.53 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=33.7
Q ss_pred EEEEEEEEC-CEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCE-EEEEHHHHH
Q ss_conf 999999971-212279998776356767348999999933688754-886299999
Q gi|254781032|r 3 ITQAFTFEA-AHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTG-FVDDFFNIE 56 (118)
Q Consensus 3 itk~~~F~a-aH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G-~viDf~~lk 56 (118)
++.+..|+| +||+-..|.++--+|+|.=+=.|.|. |..++.+ .-||=.||+
T Consensus 185 Vys~LKFEsGvHRVQRVP~TES~GRiHTSaaTVAvl---PE~eE~E~v~InP~DLr 237 (373)
T TIGR00019 185 VYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVL---PEVEEVEEVKINPKDLR 237 (373)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCEEECHHHEEEC---CCCCCCCCCCCCHHHCE
T ss_conf 565400105873031002313769251001110105---77798897555760564
No 23
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=20.51 E-value=79 Score=14.55 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=46.8
Q ss_pred EEEEECCCCC--------CEEEEEH--HHHHHHHHHHHHHHHHHHCCCCCCCC-------------------CCCHHHHH
Q ss_conf 9999336887--------5488629--99999998887753133203355433-------------------66556899
Q gi|254781032|r 36 LVMEGDVDPK--------TGFVDDF--FNIEQYFSPLLEKLDHHCLNEIEELE-------------------NPTAENIA 86 (118)
Q Consensus 36 v~~~g~~~~~--------~G~viDf--~~lk~~~~~i~~~lDH~~Lnd~~~~~-------------------nPT~Enia 86 (118)
|++.|+..++ .|++++. ..+++.+++++++--|.++|-+.++- .=+.++|.
T Consensus 351 i~viGPdid~meeG~~~Pl~i~v~VaG~~mq~D~EpVlERr~H~~~Ny~eG~mHl~QRd~~WiRisK~a~~kGf~l~hiG 430 (713)
T PRK09529 351 VEVIGPDIDDVEEGSRLPLAIVVEVAGRKMQEDFEPVLERRIHHFLNYAEGVMHIGQRDIAWVRISKEAFAKGFRLKHIG 430 (713)
T ss_pred EEEECCCHHHCCCCCCCCEEEEEEECCCHHCHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEHHHHHCCCCHHHHH
T ss_conf 79978980203557767539999952700034577788999998888765633426662589996077886687688899
Q ss_pred HHHHHHHHHHCCC-CE--EEEEE
Q ss_conf 9999999851142-12--79999
Q gi|254781032|r 87 IWIWKRLSTSLSI-LS--SVRVY 106 (118)
Q Consensus 87 ~~i~~~l~~~l~~-l~--~V~v~ 106 (118)
+-++.+++..+|. +. .|+++
T Consensus 431 ~vl~~~~k~efp~ivdk~qVti~ 453 (713)
T PRK09529 431 EILHAKFKQEFPSIVDKVQVTLY 453 (713)
T ss_pred HHHHHHHHHHHHHHHHHEEEEEE
T ss_conf 99999998786777654689998
Done!