Query gi|254781032|ref|YP_003065445.1| hypothetical protein CLIBASIA_04670 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 118
No_of_seqs 107 out of 1297
Neff 6.6
Searched_HMMs 13730
Date Wed Jun 1 11:06:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781032.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b66a_ d.96.1.2 (A:) 6-pyruvo 100.0 2.8E-45 0 260.3 11.5 117 1-117 5-137 (138)
2 d2g64a1 d.96.1.2 (A:1-139) 6-p 100.0 2.2E-44 0 255.8 11.7 117 1-117 7-139 (139)
3 d2a0sa1 d.96.1.2 (A:18-180) 6- 100.0 6.5E-37 4.8E-41 215.8 10.8 112 1-116 7-160 (163)
4 d2fxua1 c.55.1.1 (A:7-146) Act 34.8 11 0.0008 16.7 2.3 50 45-94 66-122 (140)
5 d1k8ka1 c.55.1.1 (A:3-160) Act 31.2 12 0.00085 16.6 2.0 49 45-94 77-133 (158)
6 d1ofua2 d.79.2.1 (A:209-317) C 8.0 64 0.0047 12.6 1.1 19 79-98 62-80 (109)
7 d1u8sa2 d.58.18.5 (A:88-180) p 7.8 68 0.005 12.4 1.3 19 29-49 2-20 (93)
8 d1rq2a2 d.79.2.1 (A:206-312) C 7.4 71 0.0052 12.3 1.1 12 83-94 68-79 (107)
9 d1oaoc_ e.26.1.3 (C:) Bifuncti 6.9 77 0.0056 12.2 3.3 60 47-106 385-468 (729)
10 d1e6yc_ d.58.31.1 (C:) Methyl- 5.3 57 0.0042 12.8 -0.3 18 25-51 153-170 (247)
No 1
>d1b66a_ d.96.1.2 (A:) 6-pyruvoyl tetrahydropterin synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=2.8e-45 Score=260.27 Aligned_cols=117 Identities=34% Similarity=0.721 Sum_probs=109.3
Q ss_pred CEEEEEEEEECCEECCCCCCC--------CCCCCC--CCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHH-HHHHHHHHH
Q ss_conf 979999999712122799987--------763567--673489999999336887548862999999998-887753133
Q gi|254781032|r 1 MKITQAFTFEAAHRLPRVPKT--------HKCHRM--HGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS-PLLEKLDHH 69 (118)
Q Consensus 1 m~itk~~~F~aaH~l~~~~~~--------~kc~~l--HGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~-~i~~~lDH~ 69 (118)
++|||+++|+|||||++++++ |||+++ |||||+|+|+++|+.+++.|||+||++||++++ +|+++|||+
T Consensus 5 ~~ltr~~~F~AaHrl~~~~~s~~~n~~~~GkC~~~~~HGH~y~veV~v~g~~~~~~G~v~Df~~lk~~~~~~I~~~lDH~ 84 (138)
T d1b66a_ 5 ARLSRLVSFSASHRLHSPSLSAEENLKVFGKCNNPNGHGHNYKVVVTIHGEIDPVTGMVMNLTDLKEYMEEAIMKPLDHK 84 (138)
T ss_dssp EEEEEEEEEEEEECCCCTTSCHHHHHHHHGGGGCTTCEEEEEEEEEEEEEECCTTTCCSSCHHHHHHHHHHHTHHHHTTE
T ss_pred EEEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999982448279877811243135767887788877999999996217767748777999999998354165221
Q ss_pred HCC-CCCCCC--CCCHHHHHHHHHHHHHHHCCC--CEEEEEEECCCCEEEEEC
Q ss_conf 203-355433--665568999999999851142--127999985995599750
Q gi|254781032|r 70 CLN-EIEELE--NPTAENIAIWIWKRLSTSLSI--LSSVRVYETPMSWVEYQG 117 (118)
Q Consensus 70 ~Ln-d~~~~~--nPT~Enia~~i~~~l~~~l~~--l~~V~v~Et~~~~a~Y~G 117 (118)
+|| ++|+|. |||+||||+|||++|++.+|. |.+|+|||||++||+|+|
T Consensus 85 ~Ln~~~p~~~~~~PTaEniA~~i~~~l~~~l~~~~l~~V~v~ET~~~~a~Y~g 137 (138)
T d1b66a_ 85 NLDLDVPYFADVVSTTENVAVYIWENLQRLLPVGALYKVKVYETDNNIVVYKG 137 (138)
T ss_dssp EHHHHCGGGTSSCCCHHHHHHHHHHHHHHHSCTTCEEEEEEEEETTEEEEECC
T ss_pred HCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEC
T ss_conf 10466765526785099999999999985488363579999978998899927
No 2
>d2g64a1 d.96.1.2 (A:1-139) 6-pyruvoyl tetrahydropterin synthase {Caenorhabditis elegans [TaxId: 6239]}
Probab=100.00 E-value=2.2e-44 Score=255.77 Aligned_cols=117 Identities=33% Similarity=0.621 Sum_probs=109.4
Q ss_pred CEEEEEEEEECCEECCCCCCC--------CCCCCC--CCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHH
Q ss_conf 979999999712122799987--------763567--6734899999993368875488629999999988877531332
Q gi|254781032|r 1 MKITQAFTFEAAHRLPRVPKT--------HKCHRM--HGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHC 70 (118)
Q Consensus 1 m~itk~~~F~aaH~l~~~~~~--------~kc~~l--HGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~ 70 (118)
+.|||+++|+|||||.+++++ |||.++ |||||+|+|+++|+.+++.|||+||++||+++++|+++|||++
T Consensus 7 ~~itr~~~F~AaH~l~~~~~~~~~n~~~~GkC~~~~~HGH~y~vev~v~g~~~~~~G~viDF~~lk~~~~~i~~~lDH~~ 86 (139)
T d2g64a1 7 VTMERVDSFSAAHRLHSEKLSDAENKETFGKCNNSNGHGHNYVWKVKLRGEVDPTSGMVYDLAKLKKEMSLVLDTVDHRN 86 (139)
T ss_dssp EEEEEEEEEEEEECCCCTTSCHHHHHHHHGGGGCTTCEEEEEEEEEEEEEECCTTTCCSSCHHHHHHHHHHHHHTTTTEE
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999972214488876611176467767898999984899999983127867879779998868999987741454
Q ss_pred CC-CCCCCC--CCCHHHHHHHHHHHHHHHCCC---CEEEEEEECCCCEEEEEC
Q ss_conf 03-355433--665568999999999851142---127999985995599750
Q gi|254781032|r 71 LN-EIEELE--NPTAENIAIWIWKRLSTSLSI---LSSVRVYETPMSWVEYQG 117 (118)
Q Consensus 71 Ln-d~~~~~--nPT~Enia~~i~~~l~~~l~~---l~~V~v~Et~~~~a~Y~G 117 (118)
|| ++++|+ |||+||||+|||++|++.++. |.+|+|||||++||+|+|
T Consensus 87 Ln~~~~~f~~~nPTaEnla~~i~~~l~~~l~~~~~L~~V~v~ET~~~~a~Y~G 139 (139)
T d2g64a1 87 LDKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVLYKVTIEETPKNIFTYKG 139 (139)
T ss_dssp HHHHCGGGGTSCCCHHHHHHHHHHHHHHHCSSGGGEEEEEEEEETTEEEEECC
T ss_pred HCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEC
T ss_conf 42435545146862899999999999975578855999999967992899979
No 3
>d2a0sa1 d.96.1.2 (A:18-180) 6-pyruvoyl tetrahydropterin synthase {Plasmodium vivax [TaxId: 5855]}
Probab=100.00 E-value=6.5e-37 Score=215.85 Aligned_cols=112 Identities=24% Similarity=0.465 Sum_probs=96.1
Q ss_pred CEEEEEEEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCC------
Q ss_conf 97999999971212279998776356767348999999933688754886299999999888775313320335------
Q gi|254781032|r 1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEI------ 74 (118)
Q Consensus 1 m~itk~~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~------ 74 (118)
|..++.|+|+|||+|+. .|||+++|||||+|+|++.|+.+ +.|||+||+++|++++++++.|||++|+..
T Consensus 7 ~~~~~~f~F~aaH~l~~---~g~C~~lHGH~y~v~v~l~g~ld-~~gmv~DF~~lK~~i~~i~d~lDH~~l~~~~d~~l~ 82 (163)
T d2a0sa1 7 LVESPLFSFNCAHFIAF---KGFRETLHGHNYNVSLRLRGNIQ-GDGYVIDFSILKEKVRKVCKQLDHHFILPMYSDVLN 82 (163)
T ss_dssp EEEEEEEEEEEEECCEE---TTEECCCEEEEEEEEEEEEEECC-TTSCSSCHHHHHHHHHHHHHHHSSSEEEETTCSSCE
T ss_pred EEECCEEEEECCCCCCC---CCCCCCCCCCCEEEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCHH
T ss_conf 99740579957765787---99857962887799999997738-766422689999999999986687775566783112
Q ss_pred ---------------------------CCCCCCCHHHHHHHHHHHHHHHCCC---------CEEEEEEECCCCEEEEE
Q ss_conf ---------------------------5433665568999999999851142---------12799998599559975
Q gi|254781032|r 75 ---------------------------EELENPTAENIAIWIWKRLSTSLSI---------LSSVRVYETPMSWVEYQ 116 (118)
Q Consensus 75 ---------------------------~~~~nPT~Enia~~i~~~l~~~l~~---------l~~V~v~Et~~~~a~Y~ 116 (118)
.+..|||+|+||+|||++|.+.++. +.+|+|||||++||+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~p~~~~~~lp~~~pTaE~lA~~i~~~l~~~l~~~~~~~~~v~~~~V~v~Etp~~~A~y~ 160 (163)
T d2a0sa1 83 IQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGLYILNQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVH 160 (163)
T ss_dssp EEEETTEEEEECTTCCEEEEEGGGEEEESCSSCCHHHHHHHHHHHHHHHHCHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred HHHCCCCCEEEECCCCEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCEEEEE
T ss_conf 232045303552265011146775788278886689999999999998634102675645999999985799889999
No 4
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
Probab=34.76 E-value=11 Score=16.70 Aligned_cols=50 Identities=14% Similarity=0.334 Sum_probs=31.5
Q ss_pred CCEEEEEHHHHHHHHHHHHHH-H-----HHHHCCCCCCCCC-CCHHHHHHHHHHHHH
Q ss_conf 754886299999999888775-3-----1332033554336-655689999999998
Q gi|254781032|r 45 KTGFVDDFFNIEQYFSPLLEK-L-----DHHCLNEIEELEN-PTAENIAIWIWKRLS 94 (118)
Q Consensus 45 ~~G~viDf~~lk~~~~~i~~~-l-----DH~~Lnd~~~~~n-PT~Enia~~i~~~l~ 94 (118)
+.|+++|...++++++.+... + ||..|-.-+.+.. ..-|+++..+||.+.
T Consensus 66 ~~g~v~dwd~~e~~~~~~~~~~l~~~~~~~pvlltE~~~~~~~~r~~~~EilFE~~~ 122 (140)
T d2fxua1 66 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFN 122 (140)
T ss_dssp ETTEECCHHHHHHHHHHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 587464899999999986640146487778641214678999999999998314389
No 5
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=31.21 E-value=12 Score=16.56 Aligned_cols=49 Identities=27% Similarity=0.418 Sum_probs=30.6
Q ss_pred CCEEEEEHHHHHHHHHHHHHH-H-----HHHHCCCCCCCCCC--CHHHHHHHHHHHHH
Q ss_conf 754886299999999888775-3-----13320335543366--55689999999998
Q gi|254781032|r 45 KTGFVDDFFNIEQYFSPLLEK-L-----DHHCLNEIEELENP--TAENIAIWIWKRLS 94 (118)
Q Consensus 45 ~~G~viDf~~lk~~~~~i~~~-l-----DH~~Lnd~~~~~nP--T~Enia~~i~~~l~ 94 (118)
+.|.++|+..++++++.+... + ||..|-.-+.+ +| --|.++..+||++.
T Consensus 77 ~~G~i~dwd~~e~l~~~~~~~~l~v~~~~~pvlltEp~~-~~~~~Re~~~EilFE~~~ 133 (158)
T d1k8ka1 77 RHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPL-NTPENREYTAEIMFESFN 133 (158)
T ss_dssp ETTEESCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTT-CCHHHHHHHHHHHHHTSC
T ss_pred CCCEEECHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC-CCHHHHHHHHHHHHHHCC
T ss_conf 598574099999999999887416697778356540488-999999999999750069
No 6
>d1ofua2 d.79.2.1 (A:209-317) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.00 E-value=64 Score=12.59 Aligned_cols=19 Identities=5% Similarity=-0.074 Sum_probs=7.0
Q ss_pred CCCHHHHHHHHHHHHHHHCC
Q ss_conf 66556899999999985114
Q gi|254781032|r 79 NPTAENIAIWIWKRLSTSLS 98 (118)
Q Consensus 79 nPT~Enia~~i~~~l~~~l~ 98 (118)
+.|...+.. +-+.++..+.
T Consensus 62 ~~~l~e~~~-~~~~i~~~~~ 80 (109)
T d1ofua2 62 DLSLGEYSD-VGNIIEQFAS 80 (109)
T ss_dssp TCCHHHHHH-HHHHHHHHSC
T ss_pred CCCHHHHHH-HHHHHHHHHC
T ss_conf 777889999-9999997515
No 7
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
Probab=7.84 E-value=68 Score=12.44 Aligned_cols=19 Identities=42% Similarity=0.726 Sum_probs=12.7
Q ss_pred CCCEEEEEEEEECCCCCCEEE
Q ss_conf 734899999993368875488
Q gi|254781032|r 29 GHSYRVELVMEGDVDPKTGFV 49 (118)
Q Consensus 29 GH~y~v~v~~~g~~~~~~G~v 49 (118)
-|.|.++|++.|+ |..|.|
T Consensus 2 ~~~~tv~v~v~g~--DrpGIV 20 (93)
T d1u8sa2 2 THAYTVEVYVESD--DKLGLT 20 (93)
T ss_dssp CCSEEEEEEEEES--CCTTHH
T ss_pred CCCEEEEEEEEEC--CCCCHH
T ss_conf 9626899999979--989989
No 8
>d1rq2a2 d.79.2.1 (A:206-312) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.37 E-value=71 Score=12.34 Aligned_cols=12 Identities=8% Similarity=-0.003 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 689999999998
Q gi|254781032|r 83 ENIAIWIWKRLS 94 (118)
Q Consensus 83 Enia~~i~~~l~ 94 (118)
+.+...|.+++.
T Consensus 68 ~~~~~~i~~~~~ 79 (107)
T d1rq2a2 68 NEAASLVQDAAH 79 (107)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999887638
No 9
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit {Moorella thermoacetica [TaxId: 1525]}
Probab=6.88 E-value=77 Score=12.18 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=36.8
Q ss_pred EEEEEH--HHHHHHHHHHHHHHHHHHCCCCCCCC-------------------CCCHHHHHHHHHHHHHHHCCC-CEE--
Q ss_conf 488629--99999998887753133203355433-------------------665568999999999851142-127--
Q gi|254781032|r 47 GFVDDF--FNIEQYFSPLLEKLDHHCLNEIEELE-------------------NPTAENIAIWIWKRLSTSLSI-LSS-- 102 (118)
Q Consensus 47 G~viDf--~~lk~~~~~i~~~lDH~~Lnd~~~~~-------------------nPT~Enia~~i~~~l~~~l~~-l~~-- 102 (118)
|++++. ..++..+++++++-=|.++|-+.++- .=+.++|.+-+..+++..+|. +.+
T Consensus 385 gi~v~VaG~~mq~D~EpVlERriH~~~Ny~eG~mH~~QRd~~WiRISK~a~~kGf~l~hiG~vl~~~~k~efp~ivdk~q 464 (729)
T d1oaoc_ 385 GILVDIYGRKMQADFEGVLERRIHDFINYGEGLWHTGQRNINWLRVSKDAVAKGFRFKNYGEILVAKMKEEFPAIVDRVQ 464 (729)
T ss_dssp EEEEEEECTTCCGGGHHHHHHHHHHHHHTBTTEEEEEETTEEEEEEEHHHHHHTCCTHHHHHHHHHHHHHHSBTTBSEEE
T ss_pred EEEEEECCHHCCHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEEECHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEE
T ss_conf 99998328000414788999999999875051698347762899961789866985777999999999877675655689
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254781032|r 103 VRVY 106 (118)
Q Consensus 103 V~v~ 106 (118)
|.++
T Consensus 465 Vti~ 468 (729)
T d1oaoc_ 465 VTIF 468 (729)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9998
No 10
>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=5.33 E-value=57 Score=12.85 Aligned_cols=18 Identities=39% Similarity=0.672 Sum_probs=10.9
Q ss_pred CCCCCCCEEEEEEEEECCCCCCEEEEE
Q ss_conf 567673489999999336887548862
Q gi|254781032|r 25 HRMHGHSYRVELVMEGDVDPKTGFVDD 51 (118)
Q Consensus 25 ~~lHGH~y~v~v~~~g~~~~~~G~viD 51 (118)
..+|||+-++ +++||..|
T Consensus 153 aTVHGHslRL---------dEnGmMFD 170 (247)
T d1e6yc_ 153 ATVHGHSVRL---------QEDGVMFD 170 (247)
T ss_dssp SCCCCTTSCB---------CTTSCCCC
T ss_pred CEEECCEEEE---------CCCCHHHH
T ss_conf 2010422324---------57760588
Done!