RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781032|ref|YP_003065445.1| hypothetical protein CLIBASIA_04670 [Candidatus Liberibacter asiaticus str. psy62] (118 letters) >2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa} Length = 138 Score = 146 bits (369), Expect = 1e-36 Identities = 64/117 (54%), Positives = 87/117 (74%) Query: 1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS 60 M++ + FTFE+AHRLP VP+ HKC R+HGHS+RV + +EG+VDP TG++ DF I+ F Sbjct: 21 MELFKEFTFESAHRLPHVPEGHKCGRLHGHSFRVAIHIEGEVDPHTGWIRDFAEIKAIFK 80 Query: 61 PLLEKLDHHCLNEIEELENPTAENIAIWIWKRLSTSLSILSSVRVYETPMSWVEYQG 117 P+ E+LDH+ LN+I LENPT+EN+ WIW++L L LS VRV+ET S EY+G Sbjct: 81 PIYEQLDHNYLNDIPGLENPTSENLCRWIWQQLKPLLPELSKVRVHETCTSGCEYRG 137 >1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, pterine synthesis; HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A 1gtq_A 3i2b_A Length = 140 Score = 121 bits (306), Expect = 3e-29 Identities = 40/133 (30%), Positives = 73/133 (54%), Gaps = 16/133 (12%) Query: 1 MKITQAFTFEAAHRLPR--------VPKTHKCHR--MHGHSYRVELVMEGDVDPKTGFVD 50 ++++ +F A+HRL + KC+ HGH+Y+V + + G++DP TG V Sbjct: 7 ARLSRLVSFSASHRLHSPSLSAEENLKVFGKCNNPNGHGHNYKVVVTIHGEIDPVTGMVM 66 Query: 51 DFFNIEQYF-SPLLEKLDHHCLN-EIEELE--NPTAENIAIWIWKRLSTSLSI--LSSVR 104 + ++++Y +++ LDH L+ ++ T EN+A++IW+ L L + L V+ Sbjct: 67 NLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRLLPVGALYKVK 126 Query: 105 VYETPMSWVEYQG 117 VYET + V Y+G Sbjct: 127 VYETDNNIVVYKG 139 >2g64_A Putative 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, pterine synthesis; 1.80A {Caenorhabditis elegans} SCOP: d.96.1.2 Length = 140 Score = 119 bits (300), Expect = 1e-28 Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 16/133 (12%) Query: 1 MKITQAFTFEAAHRLPR--------VPKTHKCHRM--HGHSYRVELVMEGDVDPKTGFVD 50 + + + +F AAHRL KC+ HGH+Y ++ + G+VDP +G V Sbjct: 7 VTMERVDSFSAAHRLHSEKLSDAENKETFGKCNNSNGHGHNYVWKVKLRGEVDPTSGMVY 66 Query: 51 DFFNIEQYFSPLLEKLDHHCLN-EIEELEN--PTAENIAIWIWKRLSTSLS---ILSSVR 104 D +++ S +L+ +DH L+ ++E + T+EN+AI+++++L + +S +L V Sbjct: 67 DLAKLKKEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVLYKVT 126 Query: 105 VYETPMSWVEYQG 117 + ETP + Y+G Sbjct: 127 IEETPKNIFTYKG 139 >2dj6_A Hypothetical protein PH0634; 6-pyruvoyl tetrahydrobiopterin synthase (PTPS), X-RAY diffraction, structural genomics, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} PDB: 2dtt_A* Length = 115 Score = 111 bits (278), Expect = 5e-26 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 10/119 (8%) Query: 1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS 60 +I +F+AAH + +HGH++ +E+ +EG++ G+V DF + + Sbjct: 3 SRIIVRTSFDAAHAVKV---GDHWEDVHGHTFFLEVAIEGEIK--NGYVMDFLELRKIVE 57 Query: 61 PLLEKLDHHCLNEIEELENPTAENIAIWIWKRLSTSLSI---LSSVRVYETPMSWVEYQ 116 + ++LDH LN I ENPT ENIA+WI +R+ L L V ++E + VE + Sbjct: 58 EITKELDHRNLNNI--FENPTTENIALWIGERIRDKLPPYVKLKRVVLWEGKDNGVELE 114 >3d7j_A Uncharacterized protein SCO6650; T-fold, unknown function; 1.45A {Streptomyces coelicolor} Length = 152 Score = 103 bits (257), Expect = 1e-23 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 14/129 (10%) Query: 2 KITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSP 61 IT AH R+HG ++ V+ + + V D Q Sbjct: 23 SITVRDHIMIAHSFRGDVF-GPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGA 81 Query: 62 LLEKLDHHCLNEIEELE--NPTAENIAIWIWKRLSTSLS-----------ILSSVRVYET 108 ++ L++ L+ + N + E +A I RL+ + +V ++E+ Sbjct: 82 VVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHES 141 Query: 109 PMSWVEYQG 117 ++W Y+ Sbjct: 142 HVAWASYER 150 >1y13_A PTPS, 6-pyruvoyl tetrahydropterin synthase; structural genomics of pathogenic protozoa consortium, SGPP, structural genomics, PSI; HET: BIO; 2.20A {Plasmodium falciparum} SCOP: d.96.1.2 Length = 181 Score = 100 bits (251), Expect = 6e-23 Identities = 29/154 (18%), Positives = 51/154 (33%), Gaps = 46/154 (29%) Query: 5 QAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLE 64 +F+F AH + +HGH+Y V L + G V G+V DF +++ + Sbjct: 29 PSFSFNCAHFIAY---NGFRETLHGHNYNVSLKVRGYVRD-DGYVIDFSILKEKVKKVCN 84 Query: 65 KLDHHCLNEIE---------------------------------ELENPTAENIAIWIWK 91 KLDHH + I +++ + E I +I Sbjct: 85 KLDHHFILPIYSDVLKFENVKNNIKIICEDNSEYSFPERDCIKLPIKHSSTEEIGQYILN 144 Query: 92 RLSTSLSI---------LSSVRVYETPMSWVEYQ 116 +L + + + V E+P Sbjct: 145 QLIEEMDVSLLKSRHIHYIEISVSESPTQKAIVH 178 >3lx3_A 6-pyruvoyl tetrahydrobiopterin synthase; PTS, PTP synthase, PTPS, metal-binding, tetrahydrobiopterin biosynthesis, folate biosynthesis; HET: XTN; 1.55A {Plasmodium vivax} PDB: 2a0s_A* 3m0n_A* 3lze_A* Length = 180 Score = 99.4 bits (247), Expect = 2e-22 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 46/155 (29%) Query: 4 TQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLL 63 + F+F AH + +HGH+Y V L + G++ G+V DF +++ + Sbjct: 27 SPLFSFNCAHFIAF---KGFRETLHGHNYNVSLRLRGNIQG-DGYVIDFSILKEKVRKVC 82 Query: 64 EKLDHHCLNEIE---------------------------------ELENPTAENIAIWIW 90 ++LDHH + + +++ + E I ++I Sbjct: 83 KQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGLYIL 142 Query: 91 KRLSTSLSI---------LSSVRVYETPMSWVEYQ 116 +L + + V V E+P Sbjct: 143 NQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVH 177 >2a0s_A 6-pyruvoyl tetrahydropterin synthase; SGPP, structural genomics, PSI, protein structure initiative, PTPS; HET: BIO; 2.20A {Plasmodium vivax} SCOP: d.96.1.2 Length = 180 Score = 95.6 bits (237), Expect = 3e-21 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 46/155 (29%) Query: 4 TQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLL 63 + F+F AH + +HGH+Y V L + G++ G+V DF +++ + Sbjct: 27 SPLFSFNCAHFIAF---KGFRETLHGHNYNVSLRLRGNIQGD-GYVIDFSILKEKVRKVC 82 Query: 64 EKLDHHCLNEIE---------------------------------ELENPTAENIAIWIW 90 ++LDHH + + +++ + E I ++I Sbjct: 83 KQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGLYIL 142 Query: 91 KRLSTSLSI---------LSSVRVYETPMSWVEYQ 116 +L + + V V E+P Sbjct: 143 NQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVH 177 >3jyg_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.95A {Wolinella succinogenes} Length = 188 Score = 95.0 bits (235), Expect = 4e-21 Identities = 34/177 (19%), Positives = 57/177 (32%), Gaps = 61/177 (34%) Query: 1 MKITQAFTFEAAHRLPR--------VPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDF 52 +I + F F HR+ + C +HGH +V + +E + G V DF Sbjct: 5 YQIAKEFDFCYGHRVWSQELNPDFSLDPCLSCRHLHGHQGKVIVHLESREL-QRGMVTDF 63 Query: 53 FNIEQYFSPLLEKLDHHCLNEIE------------------------------------- 75 ++ + + E LDH + +I+ Sbjct: 64 AHLNWFKRFIDEVLDHRFIIDIDDPLFPTLLPHFADKSALVWMEEGYARVDFERIKGESS 123 Query: 76 -----------ELENPTAENIAIWIWKRLSTSLS----ILSSVRVYETPMSWVEYQG 117 PT+E+IA W+ + L + + +SSV ETP S Sbjct: 124 PILELYESFVVVRFVPTSESIASWLLELLRSRIQPLGVKVSSVEFLETPKSRARVYN 180 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 26.4 bits (58), Expect = 1.5 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 27/79 (34%) Query: 54 NIEQYF----------SPLLEKLDH---HCLNEIEELENPTAE-------NIAIWIWKRL 93 N + YF L+ L L+E+ AE NI W+ Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT-LDAEKVFTQGLNILEWLENPS 223 Query: 94 ST-SLSILSSVRVYETPMS 111 +T L S+ P+S Sbjct: 224 NTPDKDYLLSI-----PIS 237 >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A Length = 1630 Score = 26.2 bits (58), Expect = 1.8 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%) Query: 55 IEQYFSPLLEKLDHHCLNEIEELE 78 + QYF LL++ LN+ E LE Sbjct: 414 LLQYFGILLDQ---GQLNKYESLE 434 >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 Score = 26.4 bits (58), Expect = 1.8 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 3/68 (4%) Query: 22 HKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQY---FSPLLEKLDHHCLNEIEELE 78 K G + + +T E+Y F PL+ + N+I +E Sbjct: 114 RKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVE 173 Query: 79 NPTAENIA 86 E Sbjct: 174 KLVNEKTC 181 >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (acoat), structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 Score = 26.1 bits (57), Expect = 2.0 Identities = 7/28 (25%), Positives = 15/28 (53%) Query: 59 FSPLLEKLDHHCLNEIEELENPTAENIA 86 F PL+ ++ N +E+L +E++ Sbjct: 158 FEPLVPGFEYFEFNNVEDLRRKMSEDVC 185 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.1 bits (56), Expect = 2.0 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 12/30 (40%) Query: 83 ENIAIWIWKRLSTSLSILSSVRVY---ETP 109 E A+ K+L SL ++Y P Sbjct: 18 EKQAL---KKLQASL------KLYADDSAP 38 >1oao_C CODH, carbon monoxide dehydrogenase alpha subunit; electron transfer, oxidoreductase, acetyl-COA formation, WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica} SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A Length = 729 Score = 25.5 bits (56), Expect = 2.8 Identities = 6/22 (27%), Positives = 11/22 (50%) Query: 54 NIEQYFSPLLEKLDHHCLNEIE 75 ++ F +LE+ H +N E Sbjct: 394 KMQADFEGVLERRIHDFINYGE 415 >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 Score = 25.5 bits (55), Expect = 3.0 Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 59 FSPLLEKLDHHCLNEIEELENPTAENIA 86 F PL+E ++ N++E L+ E A Sbjct: 160 FLPLVEPVEFIPYNDVEALKRAVDEETA 187 >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 Score = 24.4 bits (52), Expect = 5.8 Identities = 10/25 (40%), Positives = 19/25 (76%) Query: 55 IEQYFSPLLEKLDHHCLNEIEELEN 79 I+++F+ +E+LD L+EIE++ N Sbjct: 388 IQEHFNKKIERLDTDDLDEIEKIAN 412 >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 3.19A {Homo sapiens} Length = 479 Score = 24.5 bits (52), Expect = 5.9 Identities = 10/25 (40%), Positives = 19/25 (76%) Query: 55 IEQYFSPLLEKLDHHCLNEIEELEN 79 I+++F+ +E+LD L+EIE++ N Sbjct: 455 IQEHFNKKIERLDTDDLDEIEKIAN 479 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.136 0.430 Gapped Lambda K H 0.267 0.0613 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,129,335 Number of extensions: 48154 Number of successful extensions: 148 Number of sequences better than 10.0: 1 Number of HSP's gapped: 119 Number of HSP's successfully gapped: 36 Length of query: 118 Length of database: 5,693,230 Length adjustment: 80 Effective length of query: 38 Effective length of database: 3,753,710 Effective search space: 142640980 Effective search space used: 142640980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.3 bits)