RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781032|ref|YP_003065445.1| hypothetical protein
CLIBASIA_04670 [Candidatus Liberibacter asiaticus str. psy62]
         (118 letters)



>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase;
           tetrahydrobiopterin biosynthesis, PTP synthase, PTPS,
           lyase; 2.33A {Pseudomonas aeruginosa}
          Length = 138

 Score =  146 bits (369), Expect = 1e-36
 Identities = 64/117 (54%), Positives = 87/117 (74%)

Query: 1   MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS 60
           M++ + FTFE+AHRLP VP+ HKC R+HGHS+RV + +EG+VDP TG++ DF  I+  F 
Sbjct: 21  MELFKEFTFESAHRLPHVPEGHKCGRLHGHSFRVAIHIEGEVDPHTGWIRDFAEIKAIFK 80

Query: 61  PLLEKLDHHCLNEIEELENPTAENIAIWIWKRLSTSLSILSSVRVYETPMSWVEYQG 117
           P+ E+LDH+ LN+I  LENPT+EN+  WIW++L   L  LS VRV+ET  S  EY+G
Sbjct: 81  PIYEQLDHNYLNDIPGLENPTSENLCRWIWQQLKPLLPELSKVRVHETCTSGCEYRG 137


>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin
           biosynthesis, phosphate elimination, pterine synthesis;
           HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB:
           1b6z_A 1gtq_A 3i2b_A
          Length = 140

 Score =  121 bits (306), Expect = 3e-29
 Identities = 40/133 (30%), Positives = 73/133 (54%), Gaps = 16/133 (12%)

Query: 1   MKITQAFTFEAAHRLPR--------VPKTHKCHR--MHGHSYRVELVMEGDVDPKTGFVD 50
            ++++  +F A+HRL          +    KC+    HGH+Y+V + + G++DP TG V 
Sbjct: 7   ARLSRLVSFSASHRLHSPSLSAEENLKVFGKCNNPNGHGHNYKVVVTIHGEIDPVTGMVM 66

Query: 51  DFFNIEQYF-SPLLEKLDHHCLN-EIEELE--NPTAENIAIWIWKRLSTSLSI--LSSVR 104
           +  ++++Y    +++ LDH  L+ ++        T EN+A++IW+ L   L +  L  V+
Sbjct: 67  NLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRLLPVGALYKVK 126

Query: 105 VYETPMSWVEYQG 117
           VYET  + V Y+G
Sbjct: 127 VYETDNNIVVYKG 139


>2g64_A Putative 6-pyruvoyl tetrahydrobiopterin synthase;
           tetrahydrobiopterin biosynthesis, phosphate elimination,
           pterine synthesis; 1.80A {Caenorhabditis elegans} SCOP:
           d.96.1.2
          Length = 140

 Score =  119 bits (300), Expect = 1e-28
 Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 16/133 (12%)

Query: 1   MKITQAFTFEAAHRLPR--------VPKTHKCHRM--HGHSYRVELVMEGDVDPKTGFVD 50
           + + +  +F AAHRL               KC+    HGH+Y  ++ + G+VDP +G V 
Sbjct: 7   VTMERVDSFSAAHRLHSEKLSDAENKETFGKCNNSNGHGHNYVWKVKLRGEVDPTSGMVY 66

Query: 51  DFFNIEQYFSPLLEKLDHHCLN-EIEELEN--PTAENIAIWIWKRLSTSLS---ILSSVR 104
           D   +++  S +L+ +DH  L+ ++E  +    T+EN+AI+++++L + +S   +L  V 
Sbjct: 67  DLAKLKKEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVLYKVT 126

Query: 105 VYETPMSWVEYQG 117
           + ETP +   Y+G
Sbjct: 127 IEETPKNIFTYKG 139


>2dj6_A Hypothetical protein PH0634; 6-pyruvoyl tetrahydrobiopterin
           synthase (PTPS), X-RAY diffraction, structural genomics,
           NPPSFA; 2.10A {Pyrococcus horikoshii OT3} PDB: 2dtt_A*
          Length = 115

 Score =  111 bits (278), Expect = 5e-26
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 10/119 (8%)

Query: 1   MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS 60
            +I    +F+AAH +           +HGH++ +E+ +EG++    G+V DF  + +   
Sbjct: 3   SRIIVRTSFDAAHAVKV---GDHWEDVHGHTFFLEVAIEGEIK--NGYVMDFLELRKIVE 57

Query: 61  PLLEKLDHHCLNEIEELENPTAENIAIWIWKRLSTSLSI---LSSVRVYETPMSWVEYQ 116
            + ++LDH  LN I   ENPT ENIA+WI +R+   L     L  V ++E   + VE +
Sbjct: 58  EITKELDHRNLNNI--FENPTTENIALWIGERIRDKLPPYVKLKRVVLWEGKDNGVELE 114


>3d7j_A Uncharacterized protein SCO6650; T-fold, unknown function; 1.45A
           {Streptomyces coelicolor}
          Length = 152

 Score =  103 bits (257), Expect = 1e-23
 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 14/129 (10%)

Query: 2   KITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSP 61
            IT       AH            R+HG ++ V+     +   +   V D     Q    
Sbjct: 23  SITVRDHIMIAHSFRGDVF-GPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGA 81

Query: 62  LLEKLDHHCLNEIEELE--NPTAENIAIWIWKRLSTSLS-----------ILSSVRVYET 108
           ++  L++  L+   +    N + E +A  I  RL+  +               +V ++E+
Sbjct: 82  VVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHES 141

Query: 109 PMSWVEYQG 117
            ++W  Y+ 
Sbjct: 142 HVAWASYER 150


>1y13_A PTPS, 6-pyruvoyl tetrahydropterin synthase; structural genomics of
           pathogenic protozoa consortium, SGPP, structural
           genomics, PSI; HET: BIO; 2.20A {Plasmodium falciparum}
           SCOP: d.96.1.2
          Length = 181

 Score =  100 bits (251), Expect = 6e-23
 Identities = 29/154 (18%), Positives = 51/154 (33%), Gaps = 46/154 (29%)

Query: 5   QAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLE 64
            +F+F  AH +           +HGH+Y V L + G V    G+V DF  +++    +  
Sbjct: 29  PSFSFNCAHFIAY---NGFRETLHGHNYNVSLKVRGYVRD-DGYVIDFSILKEKVKKVCN 84

Query: 65  KLDHHCLNEIE---------------------------------ELENPTAENIAIWIWK 91
           KLDHH +  I                                   +++ + E I  +I  
Sbjct: 85  KLDHHFILPIYSDVLKFENVKNNIKIICEDNSEYSFPERDCIKLPIKHSSTEEIGQYILN 144

Query: 92  RLSTSLSI---------LSSVRVYETPMSWVEYQ 116
           +L   + +            + V E+P       
Sbjct: 145 QLIEEMDVSLLKSRHIHYIEISVSESPTQKAIVH 178


>3lx3_A 6-pyruvoyl tetrahydrobiopterin synthase; PTS, PTP synthase, PTPS,
           metal-binding, tetrahydrobiopterin biosynthesis, folate
           biosynthesis; HET: XTN; 1.55A {Plasmodium vivax} PDB:
           2a0s_A* 3m0n_A* 3lze_A*
          Length = 180

 Score = 99.4 bits (247), Expect = 2e-22
 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 46/155 (29%)

Query: 4   TQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLL 63
           +  F+F  AH +           +HGH+Y V L + G++    G+V DF  +++    + 
Sbjct: 27  SPLFSFNCAHFIAF---KGFRETLHGHNYNVSLRLRGNIQG-DGYVIDFSILKEKVRKVC 82

Query: 64  EKLDHHCLNEIE---------------------------------ELENPTAENIAIWIW 90
           ++LDHH +  +                                   +++ + E I ++I 
Sbjct: 83  KQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGLYIL 142

Query: 91  KRLSTSLSI---------LSSVRVYETPMSWVEYQ 116
            +L   + +            V V E+P       
Sbjct: 143 NQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVH 177


>2a0s_A 6-pyruvoyl tetrahydropterin synthase; SGPP, structural genomics,
           PSI, protein structure initiative, PTPS; HET: BIO; 2.20A
           {Plasmodium vivax} SCOP: d.96.1.2
          Length = 180

 Score = 95.6 bits (237), Expect = 3e-21
 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 46/155 (29%)

Query: 4   TQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLL 63
           +  F+F  AH +           +HGH+Y V L + G++    G+V DF  +++    + 
Sbjct: 27  SPLFSFNCAHFIAF---KGFRETLHGHNYNVSLRLRGNIQGD-GYVIDFSILKEKVRKVC 82

Query: 64  EKLDHHCLNEIE---------------------------------ELENPTAENIAIWIW 90
           ++LDHH +  +                                   +++ + E I ++I 
Sbjct: 83  KQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGLYIL 142

Query: 91  KRLSTSLSI---------LSSVRVYETPMSWVEYQ 116
            +L   + +            V V E+P       
Sbjct: 143 NQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVH 177


>3jyg_A Uncharacterized protein; structural genomics, unknown function,
           PSI-2, protein structure initiative; 1.95A {Wolinella
           succinogenes}
          Length = 188

 Score = 95.0 bits (235), Expect = 4e-21
 Identities = 34/177 (19%), Positives = 57/177 (32%), Gaps = 61/177 (34%)

Query: 1   MKITQAFTFEAAHRLPR--------VPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDF 52
            +I + F F   HR+          +     C  +HGH  +V + +E     + G V DF
Sbjct: 5   YQIAKEFDFCYGHRVWSQELNPDFSLDPCLSCRHLHGHQGKVIVHLESREL-QRGMVTDF 63

Query: 53  FNIEQYFSPLLEKLDHHCLNEIE------------------------------------- 75
            ++  +   + E LDH  + +I+                                     
Sbjct: 64  AHLNWFKRFIDEVLDHRFIIDIDDPLFPTLLPHFADKSALVWMEEGYARVDFERIKGESS 123

Query: 76  -----------ELENPTAENIAIWIWKRLSTSLS----ILSSVRVYETPMSWVEYQG 117
                          PT+E+IA W+ + L + +      +SSV   ETP S      
Sbjct: 124 PILELYESFVVVRFVPTSESIASWLLELLRSRIQPLGVKVSSVEFLETPKSRARVYN 180


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.4 bits (58), Expect = 1.5
 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 27/79 (34%)

Query: 54  NIEQYF----------SPLLEKLDH---HCLNEIEELENPTAE-------NIAIWIWKRL 93
           N + YF            L+  L       L+E+       AE       NI  W+    
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT-LDAEKVFTQGLNILEWLENPS 223

Query: 94  ST-SLSILSSVRVYETPMS 111
           +T     L S+     P+S
Sbjct: 224 NTPDKDYLLSI-----PIS 237


>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
           endocytosis/exocytosis complex; 7.90A {Bos taurus} SCOP:
           i.23.1.1 PDB: 1xi5_A
          Length = 1630

 Score = 26.2 bits (58), Expect = 1.8
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)

Query: 55  IEQYFSPLLEKLDHHCLNEIEELE 78
           + QYF  LL++     LN+ E LE
Sbjct: 414 LLQYFGILLDQ---GQLNKYESLE 434


>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
           genomics, center for structural genomics O infectious
           diseases; 1.80A {Campylobacter jejuni subsp}
          Length = 395

 Score = 26.4 bits (58), Expect = 1.8
 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 3/68 (4%)

Query: 22  HKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQY---FSPLLEKLDHHCLNEIEELE 78
            K     G      +  +     +T         E+Y   F PL+  +     N+I  +E
Sbjct: 114 RKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVE 173

Query: 79  NPTAENIA 86
               E   
Sbjct: 174 KLVNEKTC 181


>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
           aminotransferase (EC 2.6.1.11) (acoat), structural
           genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
           PDB: 2e54_A*
          Length = 397

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 59  FSPLLEKLDHHCLNEIEELENPTAENIA 86
           F PL+   ++   N +E+L    +E++ 
Sbjct: 158 FEPLVPGFEYFEFNNVEDLRRKMSEDVC 185


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.1 bits (56), Expect = 2.0
 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 12/30 (40%)

Query: 83  ENIAIWIWKRLSTSLSILSSVRVY---ETP 109
           E  A+   K+L  SL      ++Y     P
Sbjct: 18  EKQAL---KKLQASL------KLYADDSAP 38


>1oao_C CODH, carbon monoxide dehydrogenase alpha subunit; electron
           transfer, oxidoreductase, acetyl-COA formation,
           WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica}
           SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A
           3git_A
          Length = 729

 Score = 25.5 bits (56), Expect = 2.8
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 54  NIEQYFSPLLEKLDHHCLNEIE 75
            ++  F  +LE+  H  +N  E
Sbjct: 394 KMQADFEGVLERRIHDFINYGE 415


>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
           structural genomics/proteomics initiative, RSGI,
           structural genomics; HET: PLP; 1.35A {Thermus
           thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
          Length = 395

 Score = 25.5 bits (55), Expect = 3.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 59  FSPLLEKLDHHCLNEIEELENPTAENIA 86
           F PL+E ++    N++E L+    E  A
Sbjct: 160 FLPLVEPVEFIPYNDVEALKRAVDEETA 187


>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
           dependent ATPase, mRNA export, nucleocytoplasmic
           transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
           PDB: 3ews_A* 3g0h_A* 3fhc_B
          Length = 412

 Score = 24.4 bits (52), Expect = 5.8
 Identities = 10/25 (40%), Positives = 19/25 (76%)

Query: 55  IEQYFSPLLEKLDHHCLNEIEELEN 79
           I+++F+  +E+LD   L+EIE++ N
Sbjct: 388 IQEHFNKKIERLDTDDLDEIEKIAN 412


>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
           complex, nucleocytoplasmic transport, mRNA export,
           protein interaction; HET: ADP; 3.19A {Homo sapiens}
          Length = 479

 Score = 24.5 bits (52), Expect = 5.9
 Identities = 10/25 (40%), Positives = 19/25 (76%)

Query: 55  IEQYFSPLLEKLDHHCLNEIEELEN 79
           I+++F+  +E+LD   L+EIE++ N
Sbjct: 455 IQEHFNKKIERLDTDDLDEIEKIAN 479


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,129,335
Number of extensions: 48154
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 36
Length of query: 118
Length of database: 5,693,230
Length adjustment: 80
Effective length of query: 38
Effective length of database: 3,753,710
Effective search space: 142640980
Effective search space used: 142640980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)