RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781032|ref|YP_003065445.1| hypothetical protein
CLIBASIA_04670 [Candidatus Liberibacter asiaticus str. psy62]
         (118 letters)



>d2g64a1 d.96.1.2 (A:1-139) 6-pyruvoyl tetrahydropterin synthase
           {Caenorhabditis elegans [TaxId: 6239]}
          Length = 139

 Score =  119 bits (300), Expect = 6e-29
 Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 16/133 (12%)

Query: 1   MKITQAFTFEAAHRLPR--------VPKTHKCHRM--HGHSYRVELVMEGDVDPKTGFVD 50
           + + +  +F AAHRL               KC+    HGH+Y  ++ + G+VDP +G V 
Sbjct: 7   VTMERVDSFSAAHRLHSEKLSDAENKETFGKCNNSNGHGHNYVWKVKLRGEVDPTSGMVY 66

Query: 51  DFFNIEQYFSPLLEKLDHHCLN-EIEELEN--PTAENIAIWIWKRLSTSLS---ILSSVR 104
           D   +++  S +L+ +DH  L+ ++E  +    T+EN+AI+++++L + +S   +L  V 
Sbjct: 67  DLAKLKKEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVLYKVT 126

Query: 105 VYETPMSWVEYQG 117
           + ETP +   Y+G
Sbjct: 127 IEETPKNIFTYKG 139


>d1b66a_ d.96.1.2 (A:) 6-pyruvoyl tetrahydropterin synthase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 138

 Score =  114 bits (287), Expect = 2e-27
 Identities = 40/133 (30%), Positives = 74/133 (55%), Gaps = 16/133 (12%)

Query: 1   MKITQAFTFEAAHRLPR--------VPKTHKCHRM--HGHSYRVELVMEGDVDPKTGFVD 50
            ++++  +F A+HRL          +    KC+    HGH+Y+V + + G++DP TG V 
Sbjct: 5   ARLSRLVSFSASHRLHSPSLSAEENLKVFGKCNNPNGHGHNYKVVVTIHGEIDPVTGMVM 64

Query: 51  DFFNIEQYF-SPLLEKLDHHCLN-EIEELEN--PTAENIAIWIWKRLSTSLSI--LSSVR 104
           +  ++++Y    +++ LDH  L+ ++    +   T EN+A++IW+ L   L +  L  V+
Sbjct: 65  NLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRLLPVGALYKVK 124

Query: 105 VYETPMSWVEYQG 117
           VYET  + V Y+G
Sbjct: 125 VYETDNNIVVYKG 137


>d2a0sa1 d.96.1.2 (A:18-180) 6-pyruvoyl tetrahydropterin synthase
           {Plasmodium vivax [TaxId: 5855]}
          Length = 163

 Score = 92.5 bits (229), Expect = 8e-21
 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 46/155 (29%)

Query: 3   ITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPL 62
            +  F+F  AH +           +HGH+Y V L + G++    G+V DF  +++    +
Sbjct: 9   ESPLFSFNCAHFIAF---KGFRETLHGHNYNVSLRLRGNIQG-DGYVIDFSILKEKVRKV 64

Query: 63  LEKLDHHCLNEIE---------------------------------ELENPTAENIAIWI 89
            ++LDHH +  +                                   +++ + E I ++I
Sbjct: 65  CKQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGLYI 124

Query: 90  WKRLSTSLSI---------LSSVRVYETPMSWVEY 115
             +L   + +            V V E+P      
Sbjct: 125 LNQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATV 159


>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
           aminotransferase ArgD {Thermus thermophilus [TaxId:
           274]}
          Length = 387

 Score = 25.5 bits (55), Expect = 1.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 59  FSPLLEKLDHHCLNEIEELENPTAENIA 86
           F PL+E ++    N++E L+    E  A
Sbjct: 152 FLPLVEPVEFIPYNDVEALKRAVDEETA 179


>d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus
          subtilis [TaxId: 1423]}
          Length = 115

 Score = 23.6 bits (50), Expect = 5.1
 Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 10/98 (10%)

Query: 1  MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVD----PKTGFVDDFFNIE 56
          +KI +  TF   HRL +        + +   Y + ++ E  +D                 
Sbjct: 1  VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWLPALHVGFT 60

Query: 57 QYFSPLLEKLDHHCLNEIEEL------ENPTAENIAIW 88
          +   P L          +            +A ++A+ 
Sbjct: 61 KRIIPFLLGKQAGSRLSLVRTIQKWHQRAASAVSMALT 98


>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
           dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
           subunit {Moorella thermoacetica [TaxId: 1525]}
          Length = 729

 Score = 23.2 bits (50), Expect = 7.0
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 54  NIEQYFSPLLEKLDHHCLNEIE 75
            ++  F  +LE+  H  +N  E
Sbjct: 394 KMQADFEGVLERRIHDFINYGE 415


>d1tbua1 d.38.1.3 (A:13-116) Peroxisomal long-chain acyl-CoA
          thioesterase 1, TES1 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 104

 Score = 22.9 bits (49), Expect = 7.5
 Identities = 4/28 (14%), Positives = 10/28 (35%), Gaps = 2/28 (7%)

Query: 6  AFTFEAAHRLPRVPKTHKCHRMHGHSYR 33
          + +  A+     VP       +H +  +
Sbjct: 35 SQSLLASLHT--VPLNFFPTSLHSYFIK 60


>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 22.6 bits (48), Expect = 9.0
 Identities = 4/20 (20%), Positives = 9/20 (45%)

Query: 25  HRMHGHSYRVELVMEGDVDP 44
            R    +   + V++G +D 
Sbjct: 333 LRTGVETRNTQAVLDGSLDQ 352


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 494,476
Number of extensions: 21588
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 18
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)