HHsearch alignment for GI: 254781033 and conserved domain: CHL00033
>CHL00033 ycf3 photosystem I assembly protein Ycf3.
Probab=97.64 E-value=0.0042 Score=42.22 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=25.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999999996699899999998754313352---79999999999973994789999999998328
Q gi|254781033|r 229 LIARSLENADKGDMIASYHDAIESLKLCDNS---IMASICAAKSLISQNKKRKAEVILEKIWKVNP 291 (492)
Q Consensus 229 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~a~~~~a~~l~~~g~~~~A~~~le~a~~~~p 291 (492)
T Consensus 34 yyr~GmsaQs~GeyaEALe~Y~eAL~Le~D~~Drs~iLYNIGlIy~~nGe~~kALeyY~qALeiNP 99 (165)
T CHL00033 34 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP 99 (165)
T ss_pred HHHCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 998151010135389999999986234568512668998999999985888899999999998599