HHsearch alignment for GI: 254781033 and conserved domain: COG3063
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=99.35 E-value=9.5e-10 Score=94.08 Aligned_cols=192 Identities=15% Similarity=0.068 Sum_probs=148.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99986545521588699999999888421269899999999999525745699999999950231035789999999999
Q gi|254781033|r 156 AVYSLYFESCRIGDLNSAQRYATKALDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLE 235 (492)
Q Consensus 156 ~~~gL~~~al~~gd~~~A~~~~~~a~~~~P~~~~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~ 235 (492)
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~----------------------------------- 81 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQK----------------------------------- 81 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-----------------------------------
T ss_conf 999999999977899999988999988495208899999999999-----------------------------------
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CH-HHH--HHHHHHCCCCHHHH
Q ss_conf 99669989999999875431335279999999999973994789999999998328--98-999--99998507895899
Q gi|254781033|r 236 NADKGDMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNP--HP-EIA--NIYTHLLSENTVGK 310 (492)
Q Consensus 236 ~~~~~~~~~A~~~~~~a~~~~p~~~~a~~~~a~~l~~~g~~~~A~~~le~a~~~~p--~p-~La--~a~~~~~~~~~~~a 310 (492)
T Consensus 82 ---~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A 158 (250)
T COG3063 82 ---LGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQA 158 (250)
T ss_pred ---CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf ---07755679999999852988640552106999708986899999999871888777530454457888643770447
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999982689836899999999987998899999887866-099989999999999985799899999999996
Q gi|254781033|r 311 LKRALRLEEINKESVESLVIVSKIALEMGSIDQAHAKAMLAMK-IAPRKEIFLLLAQIEQANSHNTDKILYWTQSAL 386 (492)
Q Consensus 311 l~~~~~l~~~~P~~~e~~~~LA~~~~~~g~~~~Ar~~l~~al~-~~P~~~~~~llA~ie~~e~~d~~~ar~wl~rA~ 386 (492)
T Consensus 159 ~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~-gd~~~a~~Y~~qL~ 234 (250)
T COG3063 159 EEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRL-GDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-CCHHHHHHHHHHHH
T ss_conf 99999998837578767899879887531301899999999702566589999899999996-54889999999999