HHsearch alignment for GI: 254781033 and conserved domain: COG4105

Probab=98.06  E-value=0.0017  Score=45.22  Aligned_cols=199  Identities=18%  Similarity=0.144  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             899999875322221000168999999726885057---99986545521588699999999888421269899999999
Q gi|254781033|r  120 YLVYLLEVQIALAERQYNIAHEKLEMMLQIPATREF---AVYSLYFESCRIGDLNSAQRYATKALDISPDAPWVTEAVVQ  196 (492)
Q Consensus       120 ~L~~Ll~A~aA~~~gd~~~A~~~~~~~~~~~~~~~~---~~~gL~~~al~~gd~~~A~~~~~~a~~~~P~~~~a~~~L~~  196 (492)
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~~~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             99999999999863788999999999987099981128999999999881355899999999999878999871699999


Q ss_pred             HHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf             99952574569999999995023103578999999999999669989999999875431335279999999999973994
Q gi|254781033|r  197 QYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKGDMIASYHDAIESLKLCDNSIMASICAAKSLISQNKK  276 (492)
Q Consensus       197 l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~a~~~~a~~l~~~g~~  276 (492)
T Consensus       114 kgLs---------~~----~~i~~~~r--------------Dq~~~~~A~~~f~~~i~ryPnS~Ya~-------------  153 (254)
T COG4105         114 KGLS---------YF----FQIDDVTR--------------DQSAARAAFAAFKELVQRYPNSRYAP-------------  153 (254)
T ss_pred             HHHH---------HH----CCCCCCCC--------------CHHHHHHHHHHHHHHHHHCCCCCCHH-------------
T ss_conf             9998---------75----26775444--------------77999999999999998788970235-------------


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             789999999998328989999999850789589999999999826898---36899999999987998899999887866
Q gi|254781033|r  277 RKAEVILEKIWKVNPHPEIANIYTHLLSENTVGKLKRALRLEEINKES---VESLVIVSKIALEMGSIDQAHAKAMLAMK  353 (492)
Q Consensus       277 ~~A~~~le~a~~~~p~p~La~a~~~~~~~~~~~al~~~~~l~~~~P~~---~e~~~~LA~~~~~~g~~~~Ar~~l~~al~  353 (492)
T Consensus       154 -dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         154 -DAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             -5999999999998899999999999905769999999999871455520477899999999982872789999999973


Q ss_pred             CCCCHH
Q ss_conf             099989
Q gi|254781033|r  354 IAPRKE  359 (492)
Q Consensus       354 ~~P~~~  359 (492)
T Consensus       233 N~p~s~  238 (254)
T COG4105         233 NYPDSQ  238 (254)
T ss_pred             CCCCCC
T ss_conf             689882