HHsearch alignment for GI: 254781033 and conserved domain: COG4785
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only].
Probab=97.27 E-value=0.021 Score=36.71 Aligned_cols=218 Identities=15% Similarity=0.062 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99999999999999997210047879999863013466615899999875322221000168999999726885057999
Q gi|254781033|r 79 RNYDKGYKALYTGLMSIAAHNIPLARKMHSYVSQQHTFHNEYLVYLLEVQIALAERQYNIAHEKLEMMLQIPATREFAVY 158 (492)
Q Consensus 79 rr~~k~~~al~~gl~al~~Gd~~~A~k~~~~a~~~~~~~~~~L~~Ll~A~aA~~~gd~~~A~~~~~~~~~~~~~~~~~~~ 158 (492)
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P-~m~~vfNyLG~-Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGI-YLTQAGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHH-HHHHCCCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 8788889988612034224079998601456663496-75899989999-998602205799986667104775107776
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 865455215886999999998884212698999999999995257456999999-9995023103578999999999999
Q gi|254781033|r 159 SLYFESCRIGDLNSAQRYATKALDISPDAPWVTEAVVQQYVLAKEWSRAITFLN-QKKKNAKEWNRNRAILLIARSLENA 237 (492)
Q Consensus 159 gL~~~al~~gd~~~A~~~~~~a~~~~P~~~~a~~~L~~l~~~~gdw~~A~~~l~-~~~~~~~~~~~~~a~l~~~~a~~~~ 237 (492)
T Consensus 138 NRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL-Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~-~iV~~yLgkiS- 214 (297)
T COG4785 138 NRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL-YLNEQKLDPKQAKTNLKQRAEKSDKEQWGW-NIVEFYLGKIS- 214 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHH-HHHHHCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHCC-
T ss_conf 044023444751555999999984498980789999-987610786899999999987056765518-79999970403-
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 6699899999998754313352799999999999739947899999999983289899999998
Q gi|254781033|r 238 DKGDMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPEIANIYTH 301 (492)
Q Consensus 238 ~~~~~~~A~~~~~~a~~~~p~~~~a~~~~a~~l~~~g~~~~A~~~le~a~~~~p~p~La~a~~~ 301 (492)
T Consensus 215 ~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~ 278 (297)
T COG4785 215 EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYAL 278 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999986312128999999999999999986131178899999999988799999999999