HHsearch alignment for GI: 254781033 and conserved domain: COG4785
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only].
Probab=96.54 E-value=0.077 Score=32.35 Aligned_cols=179 Identities=17% Similarity=0.136 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999988842126989999999999952574569999999995023103578999999999999669989999999875
Q gi|254781033|r 173 AQRYATKALDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKGDMIASYHDAIES 252 (492)
Q Consensus 173 A~~~~~~a~~~~P~~~~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~~~~~~~A~~~~~~a 252 (492)
T Consensus 84 AR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~----lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 84 ARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH----LNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHH----HCCCEEEEECCCCHHHHHHHHHH
T ss_conf 86014566634967589998999999860220579998666710477510777----60440234447515559999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH----HHHHHHHHHCCCCHHHHHHHHHHHHH----HCCCC
Q ss_conf 43133527999999999997399478999999999832898----99999998507895899999999998----26898
Q gi|254781033|r 253 LKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHP----EIANIYTHLLSENTVGKLKRALRLEE----INKES 324 (492)
Q Consensus 253 ~~~~p~~~~a~~~~a~~l~~~g~~~~A~~~le~a~~~~p~p----~La~a~~~~~~~~~~~al~~~~~l~~----~~P~~ 324 (492)
T Consensus 160 YQ~D~~DPfR~LWL-Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgki--S~e~l~~~~~a~a~~n~~~Ae~L 236 (297)
T COG4785 160 YQDDPNDPFRSLWL-YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKI--SEETLMERLKADATDNTSLAEHL 236 (297)
T ss_pred HHCCCCCHHHHHHH-HHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 84498980789999-9876107868999999999870567655187999997040--39999999986312128999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 3689999999998799889999988786609998
Q gi|254781033|r 325 VESLVIVSKIALEMGSIDQAHAKAMLAMKIAPRK 358 (492)
Q Consensus 325 ~e~~~~LA~~~~~~g~~~~Ar~~l~~al~~~P~~ 358 (492)
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999861311788999999999887999