HHsearch alignment for GI: 254781033 and conserved domain: PRK02603
>PRK02603 photosystem I assembly protein Ycf3; Provisional.
Probab=98.54 E-value=6e-06 Score=64.45 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 04787999986301346661589999987532222100016899999972688---505799986545521588699999
Q gi|254781033|r 99 NIPLARKMHSYVSQQHTFHNEYLVYLLEVQIALAERQYNIAHEKLEMMLQIPA---TREFAVYSLYFESCRIGDLNSAQR 175 (492)
Q Consensus 99 d~~~A~k~~~~a~~~~~~~~~~L~~Ll~A~aA~~~gd~~~A~~~~~~~~~~~~---~~~~~~~gL~~~al~~gd~~~A~~ 175 (492)
T Consensus 14 ~ftv~ad~~~k~~p~~~~~k~A~~Yy~~G~~~q~~G~Y~EAle~Y~kAL~Le~dp~D~s~ilyNiGlIY~~~G~~~kAie 93 (172)
T PRK02603 14 SFTVMADLILKILPINKKAKEAFVYYRDGMSAQNDGDYAEALENYEEALKLEEDPNDRSYILYNMAIIYASNGEHDKALE 93 (172)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 48999999999815886336899999722577745799999999999872778962089999779999998699889999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99988842126989999999999952574569999999995023103578999999999999669989999999875431
Q gi|254781033|r 176 YATKALDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKGDMIASYHDAIESLKL 255 (492)
Q Consensus 176 ~~~~a~~~~P~~~~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~~~~~~~A~~~~~~a~~~ 255 (492)
T Consensus 94 ~Y~kALeiNP~~~~AlNNlgvIY~k~G~~--a~~-------~~~~---------------~~~~~~fdkAa~yw~kAI~l 149 (172)
T PRK02603 94 TYHQALELNPKQPSALNNIAVIYHKRGRK--AEE-------AGDQ---------------DEAEAWFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHH--HHH-------CCCH---------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999986899789999999999998599--998-------4587---------------78999999999999998850
Q ss_pred CCCCHHHHHH
Q ss_conf 3352799999
Q gi|254781033|r 256 CDNSIMASIC 265 (492)
Q Consensus 256 ~p~~~~a~~~ 265 (492)
T Consensus 150 ~P~nyi~aqn 159 (172)
T PRK02603 150 APNNYIEAQN 159 (172)
T ss_pred CCCCHHHHHH
T ss_conf 9987099999