HHsearch alignment for GI: 254781033 and conserved domain: PRK02603

>PRK02603 photosystem I assembly protein Ycf3; Provisional.
Probab=98.54  E-value=6e-06  Score=64.45  Aligned_cols=143  Identities=15%  Similarity=0.181  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             04787999986301346661589999987532222100016899999972688---505799986545521588699999
Q gi|254781033|r   99 NIPLARKMHSYVSQQHTFHNEYLVYLLEVQIALAERQYNIAHEKLEMMLQIPA---TREFAVYSLYFESCRIGDLNSAQR  175 (492)
Q Consensus        99 d~~~A~k~~~~a~~~~~~~~~~L~~Ll~A~aA~~~gd~~~A~~~~~~~~~~~~---~~~~~~~gL~~~al~~gd~~~A~~  175 (492)
T Consensus        14 ~ftv~ad~~~k~~p~~~~~k~A~~Yy~~G~~~q~~G~Y~EAle~Y~kAL~Le~dp~D~s~ilyNiGlIY~~~G~~~kAie   93 (172)
T PRK02603         14 SFTVMADLILKILPINKKAKEAFVYYRDGMSAQNDGDYAEALENYEEALKLEEDPNDRSYILYNMAIIYASNGEHDKALE   93 (172)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             48999999999815886336899999722577745799999999999872778962089999779999998699889999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf             99988842126989999999999952574569999999995023103578999999999999669989999999875431
Q gi|254781033|r  176 YATKALDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKGDMIASYHDAIESLKL  255 (492)
Q Consensus       176 ~~~~a~~~~P~~~~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~~~~~~~A~~~~~~a~~~  255 (492)
T Consensus        94 ~Y~kALeiNP~~~~AlNNlgvIY~k~G~~--a~~-------~~~~---------------~~~~~~fdkAa~yw~kAI~l  149 (172)
T PRK02603         94 TYHQALELNPKQPSALNNIAVIYHKRGRK--AEE-------AGDQ---------------DEAEAWFDKAAEYWKQAIRL  149 (172)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHH--HHH-------CCCH---------------HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999986899789999999999998599--998-------4587---------------78999999999999998850


Q ss_pred             CCCCHHHHHH
Q ss_conf             3352799999
Q gi|254781033|r  256 CDNSIMASIC  265 (492)
Q Consensus       256 ~p~~~~a~~~  265 (492)
T Consensus       150 ~P~nyi~aqn  159 (172)
T PRK02603        150 APNNYIEAQN  159 (172)
T ss_pred             CCCCHHHHHH
T ss_conf             9987099999