HHsearch alignment for GI: 254781033 and conserved domain: PRK10153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional.
Probab=96.27 E-value=0.11 Score=31.19 Aligned_cols=148 Identities=16% Similarity=0.081 Sum_probs=89.8
Q ss_pred CCCCCHHHHHH--HHHHHHHCC---CHHHHHHHHHHHHHHCCCHHHHHHHHHH-------CCCCHHHHHHHH----HHHH
Q ss_conf 13352799999--999999739---9478999999999832898999999985-------078958999999----9999
Q gi|254781033|r 255 LCDNSIMASIC--AAKSLISQN---KKRKAEVILEKIWKVNPHPEIANIYTHL-------LSENTVGKLKRA----LRLE 318 (492)
Q Consensus 255 ~~p~~~~a~~~--~a~~l~~~g---~~~~A~~~le~a~~~~p~p~La~a~~~~-------~~~~~~~al~~~----~~l~ 318 (492)
T Consensus 324 ~lP~~~~aL~~~~~A~~~l~~~d~~~l~~~idLl~~~~~~ePdn~Yv~Ae~yi~~~~~~~l~~~~~~~l~~Ln~~l~~~~ 403 (512)
T PRK10153 324 GLPHQGAALMLFYQAHHYLNSGDAKSLNKGSDLLEEILKSEPDFTYALAEKALADHVRQSLQPLDEKQLAALNTELDNIV 403 (512)
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 48998899999998515663034788999999999999729983899999999999998549888999999999999987
Q ss_pred H--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC--E
Q ss_conf 8--26898368999999999879988999998878660999899999999999857998999999999962889995--2
Q gi|254781033|r 319 E--INKESVESLVIVSKIALEMGSIDQAHAKAMLAMKIAPRKEIFLLLAQIEQANSHNTDKILYWTQSALHAMPDPL--W 394 (492)
Q Consensus 319 ~--~~P~~~e~~~~LA~~~~~~g~~~~Ar~~l~~al~~~P~~~~~~llA~ie~~e~~d~~~ar~wl~rA~~a~~dp~--W 394 (492)
T Consensus 404 ~~~~~~~~~riyeAlAl~al~~~~~~~A~~~L~~~~~~~~Svl~YILlgK~aEl~-G~~~~A~e~Y~~Af~~~~s~~tl~ 482 (512)
T PRK10153 404 ALPGVNVLSRIYEALAVQALVKGDTDEAYQALNKAIELEMSWLNYVLLGKVAELK-GDNRLAADAYSTAFNLRPGENTYY 482 (512)
T ss_pred HCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 3324688728899999999847999999999986756455699999999999964-996688999999980388389999
Q ss_pred ECCCCCCCH
Q ss_conf 756989554
Q gi|254781033|r 395 ISDDGYLSS 403 (492)
Q Consensus 395 ~c~~g~~~~ 403 (492)
T Consensus 483 l~enLvF~S 491 (512)
T PRK10153 483 LIENLVFQS 491 (512)
T ss_pred HHHHCCCCC
T ss_conf 986253036