HHsearch alignment for GI: 254781033 and conserved domain: PRK10153

>PRK10153 DNA-binding transcriptional activator CadC; Provisional.
Probab=96.27  E-value=0.11  Score=31.19  Aligned_cols=148  Identities=16%  Similarity=0.081  Sum_probs=89.8

Q ss_pred             CCCCCHHHHHH--HHHHHHHCC---CHHHHHHHHHHHHHHCCCHHHHHHHHHH-------CCCCHHHHHHHH----HHHH
Q ss_conf             13352799999--999999739---9478999999999832898999999985-------078958999999----9999
Q gi|254781033|r  255 LCDNSIMASIC--AAKSLISQN---KKRKAEVILEKIWKVNPHPEIANIYTHL-------LSENTVGKLKRA----LRLE  318 (492)
Q Consensus       255 ~~p~~~~a~~~--~a~~l~~~g---~~~~A~~~le~a~~~~p~p~La~a~~~~-------~~~~~~~al~~~----~~l~  318 (492)
T Consensus       324 ~lP~~~~aL~~~~~A~~~l~~~d~~~l~~~idLl~~~~~~ePdn~Yv~Ae~yi~~~~~~~l~~~~~~~l~~Ln~~l~~~~  403 (512)
T PRK10153        324 GLPHQGAALMLFYQAHHYLNSGDAKSLNKGSDLLEEILKSEPDFTYALAEKALADHVRQSLQPLDEKQLAALNTELDNIV  403 (512)
T ss_pred             HCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             48998899999998515663034788999999999999729983899999999999998549888999999999999987


Q ss_pred             H--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC--E
Q ss_conf             8--26898368999999999879988999998878660999899999999999857998999999999962889995--2
Q gi|254781033|r  319 E--INKESVESLVIVSKIALEMGSIDQAHAKAMLAMKIAPRKEIFLLLAQIEQANSHNTDKILYWTQSALHAMPDPL--W  394 (492)
Q Consensus       319 ~--~~P~~~e~~~~LA~~~~~~g~~~~Ar~~l~~al~~~P~~~~~~llA~ie~~e~~d~~~ar~wl~rA~~a~~dp~--W  394 (492)
T Consensus       404 ~~~~~~~~~riyeAlAl~al~~~~~~~A~~~L~~~~~~~~Svl~YILlgK~aEl~-G~~~~A~e~Y~~Af~~~~s~~tl~  482 (512)
T PRK10153        404 ALPGVNVLSRIYEALAVQALVKGDTDEAYQALNKAIELEMSWLNYVLLGKVAELK-GDNRLAADAYSTAFNLRPGENTYY  482 (512)
T ss_pred             HCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             3324688728899999999847999999999986756455699999999999964-996688999999980388389999


Q ss_pred             ECCCCCCCH
Q ss_conf             756989554
Q gi|254781033|r  395 ISDDGYLSS  403 (492)
Q Consensus       395 ~c~~g~~~~  403 (492)
T Consensus       483 l~enLvF~S  491 (512)
T PRK10153        483 LIENLVFQS  491 (512)
T ss_pred             HHHHCCCCC
T ss_conf             986253036