HHsearch alignment for GI: 254781033 and conserved domain: PRK12798
>PRK12798 chemotaxis protein; Reviewed.
Probab=96.22 E-value=0.12 Score=31.01 Aligned_cols=159 Identities=14% Similarity=0.042 Sum_probs=75.8
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH--HHHHHHHHH-HH
Q ss_conf 999995257456999999999502310357899999999999966998999999987543133527--999999999-99
Q gi|254781033|r 195 VQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKGDMIASYHDAIESLKLCDNSI--MASICAAKS-LI 271 (492)
Q Consensus 195 ~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~--~a~~~~a~~-l~ 271 (492)
T Consensus 119 g~laY~~Gr~~ea~~~L~~i~~~~-lp~~lg~~laLv~a~-l~~~~dP~~Al~~lD~aRL~aPGTLvEEAALRR~i~la~ 196 (416)
T PRK12798 119 GALAYLSGRGREARKLLSGVDPET-LPAELGAYLALVQGN-LMAATDPATALDRLDQARLLAPGTLVEEAALRRSLFIAA 196 (416)
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHH-CCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999997698799998851378010-472245779999888-751368899999988999818815899999987769998
Q ss_pred HCCCHHHHHHHHHHHHHHCCCHHHHHHH----HHHC-CCCHHHHHHHHHHHHHH-CC-CCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 7399478999999999832898999999----9850-78958999999999982-68-9836899999999987998899
Q gi|254781033|r 272 SQNKKRKAEVILEKIWKVNPHPEIANIY----THLL-SENTVGKLKRALRLEEI-NK-ESVESLVIVSKIALEMGSIDQA 344 (492)
Q Consensus 272 ~~g~~~~A~~~le~a~~~~p~p~La~a~----~~~~-~~~~~~al~~~~~l~~~-~P-~~~e~~~~LA~~~~~~g~~~~A 344 (492)
T Consensus 197 ~~g~~~r~~~~a~~Y~rRf~~S~Ya~~F~~~F~~~vv~~~~~~~~~~l~~ils~~d~~~qr~lYL~IAR~A~i~Gk~~~a 276 (416)
T PRK12798 197 QLGDADKFEALSRNYLRRFRHSPYAGNFAQRFVLAVVRLSDRIRDERLVEILSEMDPESQRELYLRIARAALIDGKTELA 276 (416)
T ss_pred HCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 63767899999999999850680067899999999987403442879999998449687899999999999870428999
Q ss_pred HHHHHHHHHCC
Q ss_conf 99988786609
Q gi|254781033|r 345 HAKAMLAMKIA 355 (492)
Q Consensus 345 r~~l~~al~~~ 355 (492)
T Consensus 277 ~~As~rA~~La 287 (416)
T PRK12798 277 RFAAERALKLA 287 (416)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999745