HHsearch alignment for GI: 254781033 and conserved domain: TIGR02561

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK; InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia..

Probab=91.02  E-value=1.1  Score=23.31  Aligned_cols=125  Identities=13%  Similarity=0.019  Sum_probs=57.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             5886999999998884212698999999999995257456999999999502310---3578999999999999669989
Q gi|254781033|r  167 IGDLNSAQRYATKALDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEW---NRNRAILLIARSLENADKGDMI  243 (492)
Q Consensus       167 ~gd~~~A~~~~~~a~~~~P~~~~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~---~~~~a~l~~~~a~~~~~~~~~~  243 (492)
T Consensus        29 ~~~~~d~~l~L~AlRvLrP~l~~~d~~dG~L~i~~G~y~dAaR~L~E~~~~~~~~svm~yg~AL--lAl--c-L~~~~D~  103 (190)
T TIGR02561        29 AADPYDIELLLDALRVLRPNLKELDMFDGWLLIARGNYDDAARILRELLASAGAASVMPYGKAL--LAL--C-LSAKGDD  103 (190)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHH--H-HHHCCCH
T ss_conf             5788889999999850276506889999999861587589999999872489972043789999--999--8-7432888


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             9999998754313352799999999999739947899999999983289899999
Q gi|254781033|r  244 ASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPEIANI  298 (492)
Q Consensus       244 ~A~~~~~~a~~~~p~~~~a~~~~a~~l~~~g~~~~A~~~le~a~~~~p~p~La~a  298 (492)
T Consensus       104 ~W~~~A~e~L~~~a~~d--av~LVkAL~~~~D~~~A~~~~~~~G~~~~~~s~Ae~  156 (190)
T TIGR02561       104 EWHLHADEVLEEDADAD--AVALVKALEAREDVLKAKEAARRTGAFEPPASVAEA  156 (190)
T ss_pred             HHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf             88999999874487850--679999886532489999986347985887115655