HHsearch alignment for GI: 254781033 and conserved domain: TIGR02795
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=97.80 E-value=0.0011 Score=46.87 Aligned_cols=98 Identities=16% Similarity=0.087 Sum_probs=56.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHH------HHHHHHCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHH
Q ss_conf 999999997399478999999999832898999------9999850789589999999999826898---3689999999
Q gi|254781033|r 264 ICAAKSLISQNKKRKAEVILEKIWKVNPHPEIA------NIYTHLLSENTVGKLKRALRLEEINKES---VESLVIVSKI 334 (492)
Q Consensus 264 ~~~a~~l~~~g~~~~A~~~le~a~~~~p~p~La------~a~~~~~~~~~~~al~~~~~l~~~~P~~---~e~~~~LA~~ 334 (492)
T Consensus 6 y~aa~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~KaPdALLKlg~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99999998538878999999999886879876710547999999997339999999999986458998606899999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 998799889999988786609998999
Q gi|254781033|r 335 ALEMGSIDQAHAKAMLAMKIAPRKEIF 361 (492)
Q Consensus 335 ~~~~g~~~~Ar~~l~~al~~~P~~~~~ 361 (492)
T Consensus 86 ~~~~g~~~~A~~~l~~V~~~YP~s~aA 112 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 987289889999999998566998788