HHsearch alignment for GI: 254781033 and conserved domain: TIGR02795

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=97.80  E-value=0.0011  Score=46.87  Aligned_cols=98  Identities=16%  Similarity=0.087  Sum_probs=56.1

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHH------HHHHHHCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHH
Q ss_conf             999999997399478999999999832898999------9999850789589999999999826898---3689999999
Q gi|254781033|r  264 ICAAKSLISQNKKRKAEVILEKIWKVNPHPEIA------NIYTHLLSENTVGKLKRALRLEEINKES---VESLVIVSKI  334 (492)
Q Consensus       264 ~~~a~~l~~~g~~~~A~~~le~a~~~~p~p~La------~a~~~~~~~~~~~al~~~~~l~~~~P~~---~e~~~~LA~~  334 (492)
T Consensus         6 y~aa~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~KaPdALLKlg~~   85 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             99999998538878999999999886879876710547999999997339999999999986458998606899999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             998799889999988786609998999
Q gi|254781033|r  335 ALEMGSIDQAHAKAMLAMKIAPRKEIF  361 (492)
Q Consensus       335 ~~~~g~~~~Ar~~l~~al~~~P~~~~~  361 (492)
T Consensus        86 ~~~~g~~~~A~~~l~~V~~~YP~s~aA  112 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf             987289889999999998566998788