HHsearch alignment for GI: 254781033 and conserved domain: TIGR02795

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=97.65  E-value=0.0012  Score=46.57  Aligned_cols=102  Identities=14%  Similarity=0.076  Sum_probs=55.1

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             455215886999999998884212698---99999999999525745699999999950231035789999999999996
Q gi|254781033|r  162 FESCRIGDLNSAQRYATKALDISPDAP---WVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENAD  238 (492)
Q Consensus       162 ~~al~~gd~~~A~~~~~~a~~~~P~~~---~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~  238 (492)
T Consensus        10 ~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~Ka-PdALLKlg~~~~~   88 (119)
T TIGR02795        10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKA-PDALLKLGMSLQE   88 (119)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHH
T ss_conf             999853887899999999988687987671054799999999733999999999998645899860-6899999999987


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             69989999999875431335279999
Q gi|254781033|r  239 KGDMIASYHDAIESLKLCDNSIMASI  264 (492)
Q Consensus       239 ~~~~~~A~~~~~~a~~~~p~~~~a~~  264 (492)
T Consensus        89 ~g~~~~A~~~l~~V~~~YP~s~aA~~  114 (119)
T TIGR02795        89 LGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             28988999999999856699878899