HHsearch alignment for GI: 254781033 and conserved domain: TIGR02795
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=97.65 E-value=0.0012 Score=46.57 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=55.1
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 455215886999999998884212698---99999999999525745699999999950231035789999999999996
Q gi|254781033|r 162 FESCRIGDLNSAQRYATKALDISPDAP---WVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENAD 238 (492)
Q Consensus 162 ~~al~~gd~~~A~~~~~~a~~~~P~~~---~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~ 238 (492)
T Consensus 10 ~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~Ka-PdALLKlg~~~~~ 88 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKA-PDALLKLGMSLQE 88 (119)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHH
T ss_conf 999853887899999999988687987671054799999999733999999999998645899860-6899999999987
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 69989999999875431335279999
Q gi|254781033|r 239 KGDMIASYHDAIESLKLCDNSIMASI 264 (492)
Q Consensus 239 ~~~~~~A~~~~~~a~~~~p~~~~a~~ 264 (492)
T Consensus 89 ~g~~~~A~~~l~~V~~~YP~s~aA~~ 114 (119)
T TIGR02795 89 LGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 28988999999999856699878899