HHsearch alignment for GI: 254781033 and conserved domain: pfam04733

>pfam04733 Coatomer_E Coatomer epsilon subunit. This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.
Probab=99.15  E-value=8.1e-07  Score=71.20  Aligned_cols=262  Identities=10%  Similarity=0.028  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             98753222210001689999997268850579998654552158869999999988842126989999999999952574
Q gi|254781033|r  125 LEVQIALAERQYNIAHEKLEMMLQIPATREFAVYSLYFESCRIGDLNSAQRYATKALDISPDAPWVTEAVVQQYVLAKEW  204 (492)
Q Consensus       125 l~A~aA~~~gd~~~A~~~~~~~~~~~~~~~~~~~gL~~~al~~gd~~~A~~~~~~a~~~~P~~~~a~~~L~~l~~~~gdw  204 (492)
T Consensus         6 f~irn~Fy~G~Yq~~i~ea~~~~~s~~~~~e~~~~~~Ra~IAlg~~~~vl~ei~~~--~~p~-L~av~~lA~y~~~~~~~   82 (290)
T pfam04733         6 FNVRNYFYLGNYQKAINESDVTSLSEEALVERDVYMYRSYLALGSYQIVISEIKES--AATP-LQAVRLLAEYLNSPSRK   82 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC--CCCH-HHHHHHHHHHHCCCCCH
T ss_conf             78999999669999999986368991357999999999999737703788862678--9831-79999999987484114


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             56999999999502310357899999999999966998999999987543133527999999999997399478999999
Q gi|254781033|r  205 SRAITFLNQKKKNAKEWNRNRAILLIARSLENADKGDMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILE  284 (492)
Q Consensus       205 ~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~a~~~~a~~l~~~g~~~~A~~~le  284 (492)
T Consensus        83 ~~~~~~l~~~~~~~~~~~~--~~~~~~aati~~~~g~~e~AL~~l~~~-----~~lE~~al~VQi~L~~nR~DLA~ke~~  155 (290)
T pfam04733        83 ESILASLKEWVADSHIGSN--STLRLLAAIIFIHEGDFDDALKHLHKG-----ENLEAMALNVQILLKMHRIDLAEQQLK  155 (290)
T ss_pred             HHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             5699999999874015667--899999999999779999999998558-----966799999999997288367999999


Q ss_pred             HHHHHCCCH---HHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf             999832898---999999985078--958999999999982689836899999999987998899999887866099989
Q gi|254781033|r  285 KIWKVNPHP---EIANIYTHLLSE--NTVGKLKRALRLEEINKESVESLVIVSKIALEMGSIDQAHAKAMLAMKIAPRKE  359 (492)
Q Consensus       285 ~a~~~~p~p---~La~a~~~~~~~--~~~~al~~~~~l~~~~P~~~e~~~~LA~~~~~~g~~~~Ar~~l~~al~~~P~~~  359 (492)
T Consensus       156 ~~q~~~eDs~l~qLa~awv~l~~Ggek~q~A~yif~EL~~~~~~t~lllng~Av~~m~~~~~~eAe~~L~eAl~~d~~d~  235 (290)
T pfam04733       156 KMQQIDEDATLTQLANAWVKLAVGGEKIQDAYYIFQEFSEKYDSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDP  235 (290)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf             98843510599999999999972647789899999999852289789999999999874787999999999987288988


Q ss_pred             HHH-HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             999-9999999857998999999999962889995275
Q gi|254781033|r  360 IFL-LLAQIEQANSHNTDKILYWTQSALHAMPDPLWIS  396 (492)
Q Consensus       360 ~~~-llA~ie~~e~~d~~~ar~wl~rA~~a~~dp~W~c  396 (492)
T Consensus       236 dtlaNliv~s~~~gK~~e~~~ryl~qL~~~~p~H~~v~  273 (290)
T pfam04733       236 ETLINLVVCALHLGKPAEVSNRNLSQLKLSHPTHPLVK  273 (290)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             99999999999809987899999999986299985999