BLAST/PSIBLAST alignment of GI: 254781033 and GI: 116254227 at iteration 1
>gi|116254227|ref|YP_770065.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841] Length = 542
>gi|115258875|emb|CAK09983.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae 3841] Length = 542
 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 155/428 (36%), Positives = 236/428 (55%), Gaps = 7/428 (1%)

Query: 1   MLRLIRYFFVISLVICSFIIVSHYPEDVSITWGNRLYRTSPFVILSILYFFLFAWILLFA 60
           ++RL+ +   + L+   F  ++  P D+S+ W  ++Y+T   V  S +   + A ++ + 
Sbjct: 2   LIRLVVFALFVLLLAYGFSWLADRPGDLSLIWEGQIYQTKLIVAASAIIALVAAVMIAWW 61

Query: 61  VSRFFLSCPAMLFHMLHKRNYDKGYKALYTGLMSIAAHNIPLARKMHSYVSQQHTFHNEY 120
             R   + P  +      R  D+GY+AL TGL++  A N  LARKM +          E 
Sbjct: 62  FVRLVWTSPHSVTRYFRARKRDRGYQALSTGLIAAGAGNALLARKMAARSRGLIRADQEP 121

Query: 121 LVYLLEVQIALAERQYNIAHEKLEMMLQIPATREFAVYSLYFESCRIGDLNSAQRYATKA 180
           L+ LLE Q AL E +++ A  K E M   P TRE  +  LY E+ R+G   +A++YA KA
Sbjct: 122 LINLLEAQAALIEGRHDEARAKFEAMANDPETRELGLRGLYLEARRLGANEAARQYAEKA 181

Query: 181 LDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKK----NAKEWNRNRAILLIARSLEN 236
            D +P  PW  +A ++    A  W  AI  L Q+K        E NR  A+LL AR+ E 
Sbjct: 182 ADNAPYLPWAAQATLEYRSQAGRWDDAIRLLEQQKAARVVEKAEANRLHAVLLTARAGEK 241

Query: 237 ADKGDMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPEIA 296
            +  +   +  DA+++LKL  + I A++ AAK+L  +   RKA  ILE+ WK  PHPEI 
Sbjct: 242 LES-NPTGARDDALQALKLAADFIPAALIAAKALFREGGVRKAASILEQAWKSAPHPEIG 300

Query: 297 NIYTHLLS-ENTVGKLKRALRLEEINKESVESLVIVSKIALEMGSIDQAHAKAMLAMKIA 355
             Y    S ++T+ +LKRA RLE     +VESL++V++ AL+     +A AKA  A  + 
Sbjct: 301 QAYVRARSGDSTLDRLKRAERLEGQRPNNVESLLVVAQAALDAQEFAKARAKAEAAAHMQ 360

Query: 356 PRKEIFLLLAQIEQANSHNTDKILYWTQSALHAMPDPLWISDDGYLSSVWLPLSPISKTL 415
           PR+  +LLLA IE+A + +  ++ +W   AL A  DP W++ DG++S  WLP+SP++  L
Sbjct: 361 PREAAYLLLADIEEAETGDQGRVRHWLAQALKAPRDPAWVA-DGFVSDKWLPVSPVTGRL 419

Query: 416 CYFEWKIP 423
             FEWK P
Sbjct: 420 DAFEWKAP 427