Query gi|254781034|ref|YP_003065447.1| hypothetical protein CLIBASIA_04680 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 344
No_of_seqs 130 out of 162
Neff 6.2
Searched_HMMs 33803
Date Wed Jun 1 20:46:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781034.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3jq1_A SUSD superfamily prote 45.3 16 0.00048 15.1 3.1 26 281-306 2-27 (60)
2 >1jb0_L Photosystem 1 reaction 38.2 21 0.00062 14.4 3.5 42 20-61 64-105 (116)
3 >2cfu_A SDSA1; SDS-hydrolase, 29.2 29 0.00086 13.5 5.4 45 279-323 62-112 (138)
4 >3de8_A Soluble cytochrome B56 29.0 30 0.00087 13.5 3.1 31 278-308 66-96 (106)
5 >2wsc_L Photosystem I reaction 22.9 38 0.0011 12.8 2.1 36 24-59 173-208 (216)
6 >2pzi_A Probable serine/threon 22.2 39 0.0012 12.7 3.9 48 279-326 15-62 (86)
7 >3hdx_A SUSD homolog, SUSD sup 22.1 40 0.0012 12.7 3.4 28 280-307 99-126 (192)
8 >1i5n_A Chemotaxis protein CHE 22.0 40 0.0012 12.7 2.6 77 222-298 57-134 (146)
9 >3dza_A Uncharacterized putati 20.1 44 0.0013 12.4 3.9 31 277-307 105-135 (191)
10 >1m1j_A Fibrinogen alpha subun 20.1 44 0.0013 12.4 6.8 40 126-165 2-41 (373)
No 1
>>3jq1_A SUSD superfamily protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482} (A:361-420)
Probab=45.29 E-value=16 Score=15.09 Aligned_cols=26 Identities=15% Similarity=0.168 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 88999999999829989999989719
Q gi|254781034|r 281 TDVIARIENNLKTGDLVKAAAEWDKI 306 (344)
Q Consensus 281 dailaRae~aL~~GdL~~Al~el~~L 306 (344)
+..|-++|+..+.||.++|+.-++.+
T Consensus 2 E~yL~~AEa~~~~g~~~~A~~~ln~v 27 (60)
T 3jq1_A 2 DVLLXLAEAYXNKGALDTSIGYINQI 27 (60)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 68999999985125837789999999
No 2
>>1jb0_L Photosystem 1 reaction centre subunit XI; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (L:39-154)
Probab=38.21 E-value=21 Score=14.41 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 356788655454330146677764234678999997533203
Q gi|254781034|r 20 EETSPPSCDVKKITWRKFFWEKILSNKTFFKILALVCVIVLT 61 (344)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggiial~~~~~lq 61 (344)
.+...|+.+..+...-+.|.+|.|++++-|.+.|+.+...+.
T Consensus 64 ~~~~~~~d~l~t~~GW~~Ft~GF~iGg~GGa~~Ay~Ll~~~~ 105 (116)
T 1jb0_L 64 QKGGSSSDPLKTSEGWSQFTAGFFVGAMGSAFVAFFLLENFL 105 (116)
T ss_dssp SSCCCSSCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 889998210227006988720213212528999999990149
No 3
>>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} (A:1-43,A:430-524)
Probab=29.22 E-value=29 Score=13.49 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHCC------HHHHHHHHHHHHHHHH
Q ss_conf 98889999999998299899999897199------8889999999999999
Q gi|254781034|r 279 AITDVIARIENNLKTGDLVKAAAEWDKIP------EKARQPSMFLRNALEA 323 (344)
Q Consensus 279 ~~dailaRae~aL~~GdL~~Al~el~~Lp------~~a~~~~~~w~~~~ea 323 (344)
+.|.++.+++.+++.||+.-|+.-++.+- ..+|..-+++..++-.
T Consensus 62 G~d~ll~~A~~al~~GdyqWAleLln~li~adP~n~eAR~LkA~Al~qLg~ 112 (138)
T 2cfu_A 62 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 112 (138)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999865635799999999997098617899999999999986
No 4
>>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric superstructure, electron transport, heme, iron, metal-binding, periplasm, transport; HET: HEM; 1.72A {Escherichia coli} PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A* 2bc5_A* 1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A* 1lm3_B* 1m6t_A 1yyj_A 1yyx_A 1yza_A 1yzc_A (A:)
Probab=28.97 E-value=30 Score=13.47 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHCCH
Q ss_conf 8988899999999982998999998971998
Q gi|254781034|r 278 DAITDVIARIENNLKTGDLVKAAAEWDKIPE 308 (344)
Q Consensus 278 ~~~dailaRae~aL~~GdL~~Al~el~~Lp~ 308 (344)
++....+-+++..++.|+++.|-..+..|-.
T Consensus 66 ~~L~~~ld~~~~la~~G~l~eAk~~l~~l~~ 96 (106)
T 3de8_A 66 DILVGQIHDALHLANEGKVKEAQAAAEQLKT 96 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999999887998999999999999
No 5
>>2wsc_L Photosystem I reaction center subunit XI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_L* 2wsf_L* 2o01_L* (L:)
Probab=22.90 E-value=38 Score=12.77 Aligned_cols=36 Identities=8% Similarity=-0.140 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 886554543301466777642346789999975332
Q gi|254781034|r 24 PPSCDVKKITWRKFFWEKILSNKTFFKILALVCVIV 59 (344)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~ggiial~~~~~ 59 (344)
.++.+..+...-..|.+|+|++++.|.+.|+.+...
T Consensus 173 ~~~~~L~T~eGWs~Ft~GF~iGg~GGa~fAy~Ll~~ 208 (216)
T 2wsc_L 173 KQPDQLQSADGWAKFTGGFFFGGVSGVTWACFLMYV 208 (216)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHHHBTTTHHHHHSCCC
T ss_pred CCHHHCCCCCCHHHHCCCEEECCCHHHHHHHHHHHC
T ss_conf 872332272158885030111134089999999962
No 6
>>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase- inhibitor complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} (A:519-604)
Probab=22.25 E-value=39 Score=12.69 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 988899999999982998999998971998889999999999999999
Q gi|254781034|r 279 AITDVIARIENNLKTGDLVKAAAEWDKIPEKARQPSMFLRNALEAHIC 326 (344)
Q Consensus 279 ~~dailaRae~aL~~GdL~~Al~el~~Lp~~a~~~~~~w~~~~eaRl~ 326 (344)
-+.+-.+=+-..+..||.++|+..|+..|+..+.-...=+..+..++.
T Consensus 15 ~vSAAFGLAR~~~a~gdr~~AV~~Ld~VP~tSrh~~~Ar~a~v~~l~~ 62 (86)
T 2pzi_A 15 VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 62 (86)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 666655789998754787779998740883330357789999988733
No 7
>>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} (A:189-270,A:348-457)
Probab=22.09 E-value=40 Score=12.67 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 8889999999998299899999897199
Q gi|254781034|r 280 ITDVIARIENNLKTGDLVKAAAEWDKIP 307 (344)
Q Consensus 280 ~dailaRae~aL~~GdL~~Al~el~~Lp 307 (344)
.|-.|-+||+..+.|+.+.|+.-++.+-
T Consensus 99 aEiyLi~AEA~a~lg~~~~A~~~LN~VR 126 (192)
T 3hdx_A 99 EDITLLRAEALCALNRSTEAVSYLNXIR 126 (192)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 8899999999998588189999999999
No 8
>>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} (A:)
Probab=22.01 E-value=40 Score=12.66 Aligned_cols=77 Identities=4% Similarity=-0.124 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 28999899999999999999975204677-788899999999876324127887788898889999999998299899
Q gi|254781034|r 222 IKIPTTIEILAKFPKVSEEMVFASESLEK-DSGFANYLLFQLTRLVKVRPIGGNIEGDAITDVIARIENNLKTGDLVK 298 (344)
Q Consensus 222 ~Gvpt~a~L~~~F~~~A~~~~~a~~~~~~-~~g~~~~l~~~~~slv~vR~~~~~~~G~~~dailaRae~aL~~GdL~~ 298 (344)
-|+...+.|...+-++...++.....+.. ...++.+....+..++.--..++.....++..++.+.+..+..+.-..
T Consensus 57 ~gl~~i~~lah~lE~~l~~l~~~~~~~~~~~~~~l~~~~d~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 134 (146)
T 1i5n_A 57 FGFTILQETTHLXENLLDEARRGEXQLNTDIINLFLETKDIXQEQLDAYKNSEEPDAASFEYICNALRQLALEAKGET 134 (146)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 477999999999999999998089799999999999999999999999980899995469999999997524678899
No 9
>>3dza_A Uncharacterized putative membrane protein; YP_001337144.1, putative membrane protein of unknown function, structural genomics; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} (A:)
Probab=20.13 E-value=44 Score=12.42 Aligned_cols=31 Identities=16% Similarity=0.092 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 8898889999999998299899999897199
Q gi|254781034|r 277 GDAITDVIARIENNLKTGDLVKAAAEWDKIP 307 (344)
Q Consensus 277 G~~~dailaRae~aL~~GdL~~Al~el~~Lp 307 (344)
.....+.+..+...|+.||..+|...|..+-
T Consensus 105 ~~~~~aai~~A~~~l~~Gd~~~A~~~L~~a~ 135 (191)
T 3dza_A 105 TPEKESAIQSANEKLAKGDQKGAIDTLRLAG 135 (191)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 2689999999999997778999999998627
No 10
>>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} (A:119-491)
Probab=20.07 E-value=44 Score=12.41 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9988888763367899999999999999999999999999
Q gi|254781034|r 126 ANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKME 165 (344)
Q Consensus 126 ~~~~~~~~~~~~~~v~~Le~~~~~~~~~~~~l~~~l~~~e 165 (344)
++++..++.++.+++..|++.+++...++++....+....
T Consensus 2 ~~~lk~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (373)
T 1m1j_A 2 IVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKI 41 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999
Done!