RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781034|ref|YP_003065447.1| hypothetical protein
CLIBASIA_04680 [Candidatus Liberibacter asiaticus str. psy62]
(344 letters)
>gnl|CDD|150410 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 561
Score = 43.2 bits (102), Expect = 1e-04
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 224 IPTTIEILAKFPKVSEEMVFASESLEKDSGFANYLLFQLTRLVKVRPIGGNI--EGDAIT 281
I + ++ +F ++ E+ AS L +++G +LL L + +P G +GD +
Sbjct: 445 ILSEEQLRNRFNLLAPELRKAS-LLPENAGLLGHLLSYLFSKLLFKPKQGEADPDGDDVE 503
Query: 282 DVIARIENNLKTGDLVKAAAE 302
V+AR E NL+ GDL KAA E
Sbjct: 504 SVLARAEYNLERGDLDKAARE 524
>gnl|CDD|116029 pfam07407, Seadorna_VP6, Seadornavirus VP6 protein. This family
consists of several VP6 proteins from the Banna virus as
well as a related protein VP5 from the Kadipiro virus.
Members of this family are typically of around 420
residues in length. The function of this family is
unknown.
Length = 420
Score = 31.2 bits (70), Expect = 0.37
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 276 EGDAITDVIARIENNLKTGDLVKAAAEWD-------KIPEKARQPSMFLRNALEAH 324
E +A+ I R+E++ T D+V+ D KI +K R+P +F R+ +E H
Sbjct: 47 ENEALKTKIHRLESDWTTSDIVEKIELMDAQFDRIGKIMDKMREPMLFKRDDIELH 102
>gnl|CDD|178000 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 31.0 bits (70), Expect = 0.43
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 73 KFLRTDNNLLLLPSVSPLKEDPKDISPVIEKEIISQNLSIAQQKDEETADKELANTQNFN 132
F+RTDN P PL E + EK I+ + I ++ ++E F
Sbjct: 348 DFVRTDNTCGPEP---PLLERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFK 404
Query: 133 IKPLLEEIASLKQ----LISDLSKNYQDIVTRLTKME 165
L E + L+Q + +LSK ++++ +L KME
Sbjct: 405 RVALEEGLKELEQDEENFLKELSKEEKELLEKL-KME 440
>gnl|CDD|178699 PLN03154, PLN03154, putative allyl alcohol dehydrogenase;
Provisional.
Length = 348
Score = 28.3 bits (63), Expect = 3.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 272 GGNIEGDAITDVIARIENNLKTGDLVKAAAEWDK 305
G IEG ++ V+ + N K GDL+ W++
Sbjct: 77 GQRIEGFGVSKVVDSDDPNFKPGDLISGITGWEE 110
>gnl|CDD|163414 TIGR03702, lip_kinase_YegS, lipid kinase YegS. Members of this
protein family are designated YegS, an apparent lipid
kinase family in the Proteobacteria. Bakali, et al.
report phosphatidylglycerol kinase activity for the
member from Escherichia coli, but refrain from calling
that activity synonymous with its biological role. Note
that a broader, subfamily-type model (TIGR00147),
includes this family but also multiple paralogs in some
species and varied functions.
Length = 293
Score = 28.2 bits (63), Expect = 3.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 245 SESLEKDSGFANYLLFQLTRLVKVRPIGGNIEG 277
SE L+K G A YL+ LTR ++ G
Sbjct: 147 SEKLKKALGGAAYLITGLTRFSELTAASCEFRG 179
>gnl|CDD|184822 PRK14791, PRK14791, lipoprotein signal peptidase; Provisional.
Length = 146
Score = 28.0 bits (63), Expect = 3.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 42 ILSNKTFFKILALVCVIVLTFIFIFTALFTEKFLR 76
IL NKT F IL + VI+ +I T K +
Sbjct: 51 ILQNKTLFLILITIIVILGLIYYIIKYKPTSKLYK 85
>gnl|CDD|185619 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 27.9 bits (62), Expect = 4.4
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 124 ELANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRMVSL 183
E+ + I L + I LK LIS + Y I++ M++ + N Q V
Sbjct: 443 EIKKKYDEKINELKKSINQLKTLISIMKSFYDLIISEKDSMDSKEKKESSDSNYQEKVDE 502
Query: 184 LI 185
L+
Sbjct: 503 LL 504
>gnl|CDD|149044 pfam07760, DUF1616, Protein of unknown function (DUF1616). This is
a family of sequences from hypothetical archaeal
proteins. The region in question is approximately 330
amino acid residues long.
Length = 278
Score = 27.7 bits (62), Expect = 4.5
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 51 ILALVCVIVLTFIFIFTALFTEKFLRTDNNLLLLPSV---------SPLKEDPKDISPVI 101
+L ++ +++LT I I E LR LL LP V + L D+ I
Sbjct: 2 LLLIILLVLLTIIAILVPPLNESPLRV---LLGLPLVLFIPGYALIAALFPARDDLDG-I 57
Query: 102 EKEIISQNLSIA 113
E+ +S LSIA
Sbjct: 58 ERAALSVGLSIA 69
>gnl|CDD|152155 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 402
Score = 27.8 bits (62), Expect = 4.7
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 71 TEKFLRTDNNLLLLPSVSPLKEDPKDISPVIEKEIISQNLSIAQQKDEETADKELANTQN 130
T FLR ++ S + + SP+ + + + LS Q +EE+ D EL +
Sbjct: 206 TPSFLRRNS-----ASPANEPDFSVSPSPLRPQRPVGKGLSELVQMEEESIDDELDVLRE 260
Query: 131 FNIKPLLEEIASLKQLISDLSKNYQDIV---------TRLTKMETLTANPLRNPNT 177
+ E + + S + + V TR KM + A P P+
Sbjct: 261 IEAEEAESEPIEEEVVDSQAANDEPRRVFKKKGQKRTTRRVKMRPVRAKPSDEPSL 316
>gnl|CDD|180067 PRK05420, PRK05420, aquaporin Z; Provisional.
Length = 231
Score = 27.2 bits (61), Expect = 5.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 53 ALVCVIVLTFIFIFTAL 69
ALVC +VLT F+ L
Sbjct: 134 ALVCEVVLTAFFLLVIL 150
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 27.1 bits (60), Expect = 6.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 313 PSMFLRNALEAHICSDAILKEEMAKIPQTDLP 344
P F +NA AHI D E+ KI +TD+P
Sbjct: 295 PKTFAKNAKVAHIDIDP---AEIGKIIKTDIP 323
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
A close homolog is found in the Archaeon
Methanobacterium thermoautotrophicum, and a more distant
homolog in Archaeoglobus fulgidus. The family is related
to cell division protein FtsA and heat shock protein
DnaK.
Length = 333
Score = 27.0 bits (60), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 36 KFFWEKILSNKTFFKILALVCV 57
K+F +++ S K+FFK ++CV
Sbjct: 84 KYFIKQVHSRKSFFKPRIVICV 105
>gnl|CDD|181068 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 27.2 bits (61), Expect = 6.8
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 206 FSVLKPCT----ATLMQF-----ANIKIPTTIEILAKFPK 236
+ VLKP L+ + A K+P +IE L + PK
Sbjct: 460 YVVLKPGAELTEEELIAYCREHLAKYKVPRSIEFLDELPK 499
>gnl|CDD|180125 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A
protein; Provisional.
Length = 283
Score = 26.8 bits (60), Expect = 8.4
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 138 EEIASLKQLISDLSKNYQDIVTRLTKMET 166
E+ ++LI++L+K +VT +
Sbjct: 229 EQKQIAEKLIAELTKKGYPVVTEVEAAGP 257
>gnl|CDD|152698 pfam12263, DUF3611, Protein of unknown function (DUF3611). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 180 and
205 amino acids in length. There are two completely
conserved residues (W and G) that may be functionally
important.
Length = 183
Score = 26.9 bits (60), Expect = 8.5
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 54 LVCVIVLTFIFIFTALFTEKFLRTDNNLLLLPSVS 88
LV +V I +F LF+ D NL L +
Sbjct: 26 LVLGVVSALILLFAVLFSGLVRSPDRNLGLGIGLF 60
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.316 0.132 0.364
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,400,018
Number of extensions: 344646
Number of successful extensions: 858
Number of sequences better than 10.0: 1
Number of HSP's gapped: 858
Number of HSP's successfully gapped: 53
Length of query: 344
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 250
Effective length of database: 3,963,321
Effective search space: 990830250
Effective search space used: 990830250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)