RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781034|ref|YP_003065447.1| hypothetical protein
CLIBASIA_04680 [Candidatus Liberibacter asiaticus str. psy62]
         (344 letters)



>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate
           dehydrogenase activity, cell inner membrane,
           tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A
           {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B*
           2wdv_B* (B:1-107)
          Length = 107

 Score = 30.2 bits (68), Expect = 0.44
 Identities = 11/80 (13%), Positives = 20/80 (25%), Gaps = 7/80 (8%)

Query: 163 KMETLTANPLRNPNTQRMVSLLILKNALDK-------GEYSSLNTTMQENFSVLKPCTAT 215
           +M+  T       +   + +L+ LK             E    +  +  N      C   
Sbjct: 19  RMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITP 78

Query: 216 LMQFANIKIPTTIEILAKFP 235
           +           I  L   P
Sbjct: 79  ISALNQPGKKIVIRPLPGLP 98


>1o6v_A Internalin A; bacterial infection, extracellular
           recognition, cell WALL attached, leucine rich repeat;
           1.5A {Listeria monocytogenes} (A:46-466)
          Length = 421

 Score = 29.9 bits (65), Expect = 0.57
 Identities = 4/25 (16%), Positives = 9/25 (36%), Gaps = 1/25 (4%)

Query: 130 NFNIKPLLEEIASLKQLIS-DLSKN 153
           +      ++ +  L  L   + S N
Sbjct: 9   DRLGIKSIDGVEYLNNLTQINFSNN 33


>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc,
           metalloprotease, transmembrane, hydrolase; 1.90A
           {Clostridium botulinum} (A:78-132,A:196-424)
          Length = 284

 Score = 29.4 bits (66), Expect = 0.75
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 144 KQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRMVSLLILKNALDK---GEYS 196
           K +   + +N++ IV RL K+    ++P  N N     +    K    +   G+YS
Sbjct: 145 KSIYDKVLQNFRGIVDRLNKVLVCISDP--NININIYKNKFKDKYKFVEDSEGKYS 198


>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural
           genomics, joint center for structural genomics, JCSG,
           protein structure initiative; HET: MSE 2PE; 2.71A
           {Thermotoga maritima MSB8} (A:1-212,A:291-326)
          Length = 248

 Score = 27.6 bits (60), Expect = 2.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)

Query: 136 LLEEIASLKQLISDLSKNYQDIVTRL 161
           L++EI  +KQ+I D+ K +++ V +L
Sbjct: 217 LIDEIKPVKQIIEDILKEFKETVEKL 242


>1de4_C Transferrin receptor, hemochromatosis protein; HFE,
           hereditary hemochromatosis, MHC class I; HET: NAG; 2.80A
           {Homo sapiens} (C:1-95,C:250-488)
          Length = 334

 Score = 27.1 bits (59), Expect = 3.3
 Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 256 NYLLFQLTRLVKVR-PIGGNIEGDAITDVIARIENNLKTGDLVKAAAEWDKIPEKARQPS 314
             L++ +     V+  +   ++   I ++   I+  ++    V   A+ D     A +  
Sbjct: 87  GRLVYLVENSKNVKLTVSNVLKEIKILNIFGVIKGFVEPDHYVVVGAQRDAWGPGAAKSG 146

Query: 315 MFLRNALEA 323
           +     L+ 
Sbjct: 147 VGTALLLKL 155


>1zb7_A Neurotoxin; hexxh metalloprotease; HET: FLC; 2.35A
           {Clostridium botulinum} (A:79-133,A:197-412)
          Length = 271

 Score = 27.1 bits (60), Expect = 3.5
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 6/56 (10%)

Query: 144 KQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRMVSLLILKNALDK---GEYS 196
             + +   +N+QDI  RL  + +   +     +      +   K    +   G+YS
Sbjct: 145 MNIYNKALQNFQDIANRLNIVSSAQGS---GIDISLYKQIYKNKYDFVEDPNGKYS 197


>2a97_A BONT/F, botulinum neurotoxin type F, bontoxilysin F;
           clostridium botulinum neurotoxin serotype F, light
           chain, catalytic domain, X-RAY,; 1.80A {Clostridium
           botulinum} PDB: 2a8a_A 3fie_A 3fii_A (A:276-351)
          Length = 76

 Score = 26.3 bits (58), Expect = 5.7
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 144 KQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRMVSLLILKNALDK---GEYS 196
           +++ ++L  NY+ I TRL+++   +A P    +          K  LDK   G Y+
Sbjct: 9   EKIYNNLLANYEKIATRLSEV--NSAPP--EYDINEYKDYFQWKYGLDKNADGSYT 60


>1j36_A ANCE, angiotensin converting enzyme; hydrolase; HET: LPR;
           2.40A {Drosophila melanogaster} (A:1-125)
          Length = 125

 Score = 26.0 bits (57), Expect = 6.5
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 170 NPLRNPNTQRMVSLL--ILKNALDKG---EYSSLNTTMQENFSVLKPC 212
              ++ + +R    L  +   AL +    E     + M+ NF+ +K C
Sbjct: 73  RSYQSEDLKRQFKALTKLGYAALPEDDYAELLDTLSAMESNFAKVKVC 120


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,367,253
Number of extensions: 102109
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 20
Length of query: 344
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 255
Effective length of database: 1,947,404
Effective search space: 496588020
Effective search space used: 496588020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.3 bits)