RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781034|ref|YP_003065447.1| hypothetical protein
CLIBASIA_04680 [Candidatus Liberibacter asiaticus str. psy62]
         (344 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 70.4 bits (172), Expect = 6e-13
 Identities = 80/476 (16%), Positives = 139/476 (29%), Gaps = 199/476 (41%)

Query: 8   KDIRRSTESPKQEE--TSPPSCDVKKITWRKF--FWEKILS------NKTFFKILALVCV 57
           K +   TE    ++  T+P           KF  +   + S         F ++L L   
Sbjct: 39  KILPEPTEGFAADDEPTTPAE------LVGKFLGY---VSSLVEPSKVGQFDQVLNLC-- 87

Query: 58  IVLTFIFIFTALFTEKFLRTDNNLLLLPSVSPLKEDPKDISPVIEKEII----------- 106
             LT        F   +L   N++  L   + L ++  D + V  KE+I           
Sbjct: 88  --LTE-------FENCYLEG-NDIHAL--AAKLLQEN-DTTLVKTKELIKNYITARIMAK 134

Query: 107 --------SQNLSIAQQKD-----------------EETADKELANTQNFNIKPLLEEIA 141
                   S       + +                 EE    +L  T +  +  L++  A
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR--DLYQTYHVLVGDLIKFSA 192

Query: 142 S-LKQLISD---LSKNYQ---DIVTRLTKMETLTANPLRNPNTQRM----VSL-LI-LKN 188
             L +LI       K +    +I+  L        NP   P+   +    +S  LI +  
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLE-------NPSNTPDKDYLLSIPISCPLIGV-- 243

Query: 189 ALDKGEYS----SLNTT---MQENFS---------VLKPCTATLM-------QF-ANIKI 224
            +    Y      L  T   ++             V    TA  +        F  +++ 
Sbjct: 244 -IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV----TAVAIAETDSWESFFVSVR- 297

Query: 225 PTTIEIL---------AKFPKVS--EEMVFASESLEKDSGFANYLLFQLTRLVKVRPIGG 273
              I +L         A +P  S    ++   +SLE + G  + +L        +     
Sbjct: 298 -KAITVLFFIGVRCYEA-YPNTSLPPSIL--EDSLENNEGVPSPML-------SIS---- 342

Query: 274 NIEGDAITDVIA----------RIE----N---NLK-TG---DL---------VKAAAEW 303
           N+  + + D +           ++E    N   NL  +G    L          KA +  
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402

Query: 304 D--KIPEKARQP--------------SMFLRNALEAHICSDAILKEEMAKIPQTDL 343
           D  +IP   R+               S  L  A    I  D  L +        D+
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA-SDLINKD--LVKNNVSFNAKDI 455



 Score = 36.1 bits (83), Expect = 0.012
 Identities = 30/166 (18%), Positives = 48/166 (28%), Gaps = 73/166 (43%)

Query: 70  FTEKFLRTDNNLLLLP-SV---SPLKEDPKDISPVIEKEIISQNLSIAQQKDEETADKEL 125
           F+E+ L+  N  L  P +    S L     D+   I K+++  N+S           K++
Sbjct: 409 FSERKLKFSNRFL--PVASPFHSHLLVPASDL---INKDLVKNNVSFNA--------KDI 455

Query: 126 A----NTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKM--------ETLTANP-- 171
                +T +                 SDL      I  R+           ET T     
Sbjct: 456 QIPVYDTFDG----------------SDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499

Query: 172 ---------------LRNPNTQ----RMVSLLILKNALDKG---EY 195
                          L + N      R    +I+   LD     +Y
Sbjct: 500 HILDFGPGGASGLGVLTHRNKDGTGVR----VIVAGTLDINPDDDY 541


>1lwu_C Fibrinogen gamma chain; coiled coil, heterotrimer, protein-peptide
           complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
           {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
           1n73_C*
          Length = 323

 Score = 30.1 bits (67), Expect = 0.65
 Identities = 17/103 (16%), Positives = 39/103 (37%)

Query: 107 SQNLSIAQQKDEETADKELANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKMET 166
           S   ++ +  +E    +++  + +  I+ L E     +Q ++ L +   DI    ++   
Sbjct: 2   SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQ 61

Query: 167 LTANPLRNPNTQRMVSLLILKNALDKGEYSSLNTTMQENFSVL 209
            T     +P T +    ++     D G Y       ++ F V 
Sbjct: 62  DTTANKISPITGKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVF 104


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.0 bits (66), Expect = 0.73
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 7/32 (21%)

Query: 139 EIASLKQLISDLSKNYQD-----IVTRLTKME 165
           E  +LK+L + L K Y D     +  + T ME
Sbjct: 18  EKQALKKLQASL-KLYADDSAPALAIKAT-ME 47



 Score = 27.7 bits (60), Expect = 3.8
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 5/26 (19%)

Query: 209 LKPCTATLMQFAN-----IKIPTTIE 229
           LK   A+L  +A+     + I  T+E
Sbjct: 22  LKKLQASLKLYADDSAPALAIKATME 47


>1zb7_A Neurotoxin; hexxh metalloprotease; HET: FLC; 2.35A {Clostridium
           botulinum}
          Length = 455

 Score = 28.7 bits (64), Expect = 2.1
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 6/56 (10%)

Query: 144 KQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRMVSLLILKNALDK---GEYS 196
             + +   +N+QDI  RL  +   +A      +      +   K    +   G+YS
Sbjct: 286 MNIYNKALQNFQDIANRLNIVS--SAQG-SGIDISLYKQIYKNKYDFVEDPNGKYS 338


>1hsj_A Fusion protein consisting of staphylococcus accessary regulator
           protein R and maltose...; novel fold for DNA binding;
           HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28
           c.94.1.1
          Length = 487

 Score = 27.5 bits (60), Expect = 4.1
 Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 69  LFTEKFLRTDNNLLLLPSVSP-LKEDPKDISPVIEK----EIISQNLSIAQQKDEETADK 123
                 LR+++N +    ++   +  P  ++  ++K    +++S+  S    +DE T   
Sbjct: 408 YILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRS---LQDERTVIV 464

Query: 124 ELANTQNFNIKPLLEEIASLKQ 145
            + +TQ  NI+ L+ E+    +
Sbjct: 465 YVTDTQKANIQKLISELEEYIK 486


>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
           {Methanothermobacter thermautotrophicusorganism_taxid}
          Length = 553

 Score = 26.9 bits (59), Expect = 5.9
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 11/72 (15%)

Query: 90  LKEDPKDISPVIEKEIISQN-LSIAQQKDEETADKELANTQNFNIKPLLEEIASLKQLIS 148
           L++    +   +E  +   N LS  +Q+ E    + L          + E     ++ + 
Sbjct: 39  LRKMAPQVKEAVEAAVERVNSLSPEEQQQEM---ERLG-------LEITERKQKKRKGLR 88

Query: 149 DLSKNYQDIVTR 160
           +L+    ++V R
Sbjct: 89  ELAGVKGEVVLR 100


>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane
          protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
          Length = 284

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 48 FFKILALVCVIVLTFIFI-FTALFTEKFLRTDN 79
          F  +LAL+  I+L F+ +   A  T +    D 
Sbjct: 28 FSALLALLSSIILLFVLLPVAATVTLQLFNFDE 60


>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM,
          fusion, lipidic cubic phase, lipidic, mesophase,
          cholesterol, membrane protein; HET: MAL CAU CLR PLM
          12P; 2.40A {Homo sapiens} PDB: 3d4s_A*
          Length = 500

 Score = 26.8 bits (58), Expect = 6.3
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 3  DSSMEKDIRRSTESPKQEETSPPSCDVKKITWRKFFWEKILSNKTFFKILALVCVIVLTF 62
          D +M +    S        +  P  DV     R   W   +       ++ L   IV   
Sbjct: 5  DDAMGQPGNGSAFLLAPNRSHAPDHDVT--QQRDEVWVVGMG--IVMSLIVLA--IVFGN 58

Query: 63 IFIFTALFTEKFLRTDNNLLLL 84
          + + TA+   + L+T  N  + 
Sbjct: 59 VLVITAIAKFERLQTVTNYFIT 80


>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
          PSI-2, protein structure initiative, AC technologies
          center for gene to 3D structure; HET: ETQ MAL; 2.89A
          {Homo sapiens}
          Length = 481

 Score = 27.1 bits (59), Expect = 7.0
 Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 49 FKILALVCVIVLTFI---FIFTALFTEKFLRTDNNLLLL 84
          +  L+   +I+        +  A+  E+ L+T  N L++
Sbjct: 40 YYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVV 78


>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure,
           RNA-interacting protein, acetylation, cytoplasm, disease
           mutation; NMR {Homo sapiens}
          Length = 252

 Score = 26.6 bits (59), Expect = 7.8
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 11/106 (10%)

Query: 95  KDISPVIEKEIISQNLSIAQQKDEETADKELANTQNFNI-KPLLE--EIA-SLKQLISDL 150
           KD+  V++   +  N+S  Q   +E             I K +L   E+  S K+  + L
Sbjct: 47  KDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQL 106

Query: 151 SKNYQDIVTRLTKMETLTANPLRNPNTQRMVSLLILKNALDKGEYS 196
            + ++DI T +            NP T+R  ++++++ A+    YS
Sbjct: 107 EQMFRDIATIVADKCV-------NPETKRPYTVILIERAMKDIHYS 145


>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
          membrane protein, LCP, mesophase, structural genomics,
          PSI-2; HET: ZMA STE; 2.60A {Homo sapiens}
          Length = 488

 Score = 26.8 bits (58), Expect = 8.2
 Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 51 ILALVCVIVLTFI---FIFTALFTEKFLRTDNNLLLL 84
          I   + + VL  +    +  A++    L+   N  ++
Sbjct: 25 ITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVV 61


>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+,
          K+-ATPase, P-type ATPase, membrane protein, hydrolase,
          aluminium fluoride, ATP-binding; 6.50A {Sus scrofa}
          Length = 290

 Score = 26.4 bits (58), Expect = 8.6
 Identities = 7/64 (10%), Positives = 18/64 (28%), Gaps = 12/64 (18%)

Query: 26 SCDVKKITWRKFFWEKILSNKTFF--------KILA--LVCVIVLTFIFIFTALFTEKFL 75
          SC  +   ++++ W                   I    +   +V++ IF        + +
Sbjct: 9  SCSQRMEEFQRYCWNP--DTGQMLGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMRTI 66

Query: 76 RTDN 79
              
Sbjct: 67 DPYT 70


>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein
           phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
          Length = 161

 Score = 26.6 bits (58), Expect = 8.9
 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 82  LLLPSVSPLKEDPKDISPVIEKEIISQNLSIAQQK--------DEETADKELANTQNFNI 133
            L  +V+   +D K ISP I   +++   +   ++          E     +    N ++
Sbjct: 10  YLFHTVAGKHQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHM 69

Query: 134 KPLLEEIASLKQLISDLSKN 153
           +  +E+    K ++    K 
Sbjct: 70  EEEVEDFLLKKPIVPTDGKR 89


>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the
           core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus}
           PDB: 2owq_A
          Length = 218

 Score = 26.5 bits (58), Expect = 10.0
 Identities = 7/65 (10%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 26  SCDVKKITWRKFFWEKILSNKTFFKILALVCVIVLTFIFIFTALFTEKFLRTDNNLLLLP 85
           SC + +      +W+KI       + +     ++     +    F+    + ++ +  + 
Sbjct: 124 SCKLGETKSHAIYWDKISKL--LLQHITKHVSVL---YCLGKTDFSNIRAKLESPVTTIV 178

Query: 86  SVSPL 90
              P 
Sbjct: 179 GYHPA 183


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.316    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,757,184
Number of extensions: 124892
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 42
Length of query: 344
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 251
Effective length of database: 3,438,538
Effective search space: 863073038
Effective search space used: 863073038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.3 bits)