RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781034|ref|YP_003065447.1| hypothetical protein CLIBASIA_04680 [Candidatus Liberibacter asiaticus str. psy62] (344 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 70.4 bits (172), Expect = 6e-13 Identities = 80/476 (16%), Positives = 139/476 (29%), Gaps = 199/476 (41%) Query: 8 KDIRRSTESPKQEE--TSPPSCDVKKITWRKF--FWEKILS------NKTFFKILALVCV 57 K + TE ++ T+P KF + + S F ++L L Sbjct: 39 KILPEPTEGFAADDEPTTPAE------LVGKFLGY---VSSLVEPSKVGQFDQVLNLC-- 87 Query: 58 IVLTFIFIFTALFTEKFLRTDNNLLLLPSVSPLKEDPKDISPVIEKEII----------- 106 LT F +L N++ L + L ++ D + V KE+I Sbjct: 88 --LTE-------FENCYLEG-NDIHAL--AAKLLQEN-DTTLVKTKELIKNYITARIMAK 134 Query: 107 --------SQNLSIAQQKD-----------------EETADKELANTQNFNIKPLLEEIA 141 S + + EE +L T + + L++ A Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR--DLYQTYHVLVGDLIKFSA 192 Query: 142 S-LKQLISD---LSKNYQ---DIVTRLTKMETLTANPLRNPNTQRM----VSL-LI-LKN 188 L +LI K + +I+ L NP P+ + +S LI + Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLE-------NPSNTPDKDYLLSIPISCPLIGV-- 243 Query: 189 ALDKGEYS----SLNTT---MQENFS---------VLKPCTATLM-------QF-ANIKI 224 + Y L T ++ V TA + F +++ Sbjct: 244 -IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV----TAVAIAETDSWESFFVSVR- 297 Query: 225 PTTIEIL---------AKFPKVS--EEMVFASESLEKDSGFANYLLFQLTRLVKVRPIGG 273 I +L A +P S ++ +SLE + G + +L + Sbjct: 298 -KAITVLFFIGVRCYEA-YPNTSLPPSIL--EDSLENNEGVPSPML-------SIS---- 342 Query: 274 NIEGDAITDVIA----------RIE----N---NLK-TG---DL---------VKAAAEW 303 N+ + + D + ++E N NL +G L KA + Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402 Query: 304 D--KIPEKARQP--------------SMFLRNALEAHICSDAILKEEMAKIPQTDL 343 D +IP R+ S L A I D L + D+ Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA-SDLINKD--LVKNNVSFNAKDI 455 Score = 36.1 bits (83), Expect = 0.012 Identities = 30/166 (18%), Positives = 48/166 (28%), Gaps = 73/166 (43%) Query: 70 FTEKFLRTDNNLLLLP-SV---SPLKEDPKDISPVIEKEIISQNLSIAQQKDEETADKEL 125 F+E+ L+ N L P + S L D+ I K+++ N+S K++ Sbjct: 409 FSERKLKFSNRFL--PVASPFHSHLLVPASDL---INKDLVKNNVSFNA--------KDI 455 Query: 126 A----NTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKM--------ETLTANP-- 171 +T + SDL I R+ ET T Sbjct: 456 QIPVYDTFDG----------------SDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499 Query: 172 ---------------LRNPNTQ----RMVSLLILKNALDKG---EY 195 L + N R +I+ LD +Y Sbjct: 500 HILDFGPGGASGLGVLTHRNKDGTGVR----VIVAGTLDINPDDDY 541 >1lwu_C Fibrinogen gamma chain; coiled coil, heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C* Length = 323 Score = 30.1 bits (67), Expect = 0.65 Identities = 17/103 (16%), Positives = 39/103 (37%) Query: 107 SQNLSIAQQKDEETADKELANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKMET 166 S ++ + +E +++ + + I+ L E +Q ++ L + DI ++ Sbjct: 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQ 61 Query: 167 LTANPLRNPNTQRMVSLLILKNALDKGEYSSLNTTMQENFSVL 209 T +P T + ++ D G Y ++ F V Sbjct: 62 DTTANKISPITGKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVF 104 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.0 bits (66), Expect = 0.73 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 7/32 (21%) Query: 139 EIASLKQLISDLSKNYQD-----IVTRLTKME 165 E +LK+L + L K Y D + + T ME Sbjct: 18 EKQALKKLQASL-KLYADDSAPALAIKAT-ME 47 Score = 27.7 bits (60), Expect = 3.8 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 5/26 (19%) Query: 209 LKPCTATLMQFAN-----IKIPTTIE 229 LK A+L +A+ + I T+E Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47 >1zb7_A Neurotoxin; hexxh metalloprotease; HET: FLC; 2.35A {Clostridium botulinum} Length = 455 Score = 28.7 bits (64), Expect = 2.1 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 6/56 (10%) Query: 144 KQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRMVSLLILKNALDK---GEYS 196 + + +N+QDI RL + +A + + K + G+YS Sbjct: 286 MNIYNKALQNFQDIANRLNIVS--SAQG-SGIDISLYKQIYKNKYDFVEDPNGKYS 338 >1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 Length = 487 Score = 27.5 bits (60), Expect = 4.1 Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 8/82 (9%) Query: 69 LFTEKFLRTDNNLLLLPSVSP-LKEDPKDISPVIEK----EIISQNLSIAQQKDEETADK 123 LR+++N + ++ + P ++ ++K +++S+ S +DE T Sbjct: 408 YILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRS---LQDERTVIV 464 Query: 124 ELANTQNFNIKPLLEEIASLKQ 145 + +TQ NI+ L+ E+ + Sbjct: 465 YVTDTQKANIQKLISELEEYIK 486 >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 553 Score = 26.9 bits (59), Expect = 5.9 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 11/72 (15%) Query: 90 LKEDPKDISPVIEKEIISQN-LSIAQQKDEETADKELANTQNFNIKPLLEEIASLKQLIS 148 L++ + +E + N LS +Q+ E + L + E ++ + Sbjct: 39 LRKMAPQVKEAVEAAVERVNSLSPEEQQQEM---ERLG-------LEITERKQKKRKGLR 88 Query: 149 DLSKNYQDIVTR 160 +L+ ++V R Sbjct: 89 ELAGVKGEVVLR 100 >2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1 Length = 284 Score = 26.9 bits (58), Expect = 6.2 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%) Query: 48 FFKILALVCVIVLTFIFI-FTALFTEKFLRTDN 79 F +LAL+ I+L F+ + A T + D Sbjct: 28 FSALLALLSSIILLFVLLPVAATVTLQLFNFDE 60 >2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3d4s_A* Length = 500 Score = 26.8 bits (58), Expect = 6.3 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 6/82 (7%) Query: 3 DSSMEKDIRRSTESPKQEETSPPSCDVKKITWRKFFWEKILSNKTFFKILALVCVIVLTF 62 D +M + S + P DV R W + ++ L IV Sbjct: 5 DDAMGQPGNGSAFLLAPNRSHAPDHDVT--QQRDEVWVVGMG--IVMSLIVLA--IVFGN 58 Query: 63 IFIFTALFTEKFLRTDNNLLLL 84 + + TA+ + L+T N + Sbjct: 59 VLVITAIAKFERLQTVTNYFIT 80 >3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Score = 27.1 bits (59), Expect = 7.0 Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 3/39 (7%) Query: 49 FKILALVCVIVLTFI---FIFTALFTEKFLRTDNNLLLL 84 + L+ +I+ + A+ E+ L+T N L++ Sbjct: 40 YYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVV 78 >2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein, acetylation, cytoplasm, disease mutation; NMR {Homo sapiens} Length = 252 Score = 26.6 bits (59), Expect = 7.8 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 11/106 (10%) Query: 95 KDISPVIEKEIISQNLSIAQQKDEETADKELANTQNFNI-KPLLE--EIA-SLKQLISDL 150 KD+ V++ + N+S Q +E I K +L E+ S K+ + L Sbjct: 47 KDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQL 106 Query: 151 SKNYQDIVTRLTKMETLTANPLRNPNTQRMVSLLILKNALDKGEYS 196 + ++DI T + NP T+R ++++++ A+ YS Sbjct: 107 EQMFRDIATIVADKCV-------NPETKRPYTVILIERAMKDIHYS 145 >3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} Length = 488 Score = 26.8 bits (58), Expect = 8.2 Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 3/37 (8%) Query: 51 ILALVCVIVLTFI---FIFTALFTEKFLRTDNNLLLL 84 I + + VL + + A++ L+ N ++ Sbjct: 25 ITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVV 61 >3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} Length = 290 Score = 26.4 bits (58), Expect = 8.6 Identities = 7/64 (10%), Positives = 18/64 (28%), Gaps = 12/64 (18%) Query: 26 SCDVKKITWRKFFWEKILSNKTFF--------KILA--LVCVIVLTFIFIFTALFTEKFL 75 SC + ++++ W I + +V++ IF + + Sbjct: 9 SCSQRMEEFQRYCWNP--DTGQMLGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMRTI 66 Query: 76 RTDN 79 Sbjct: 67 DPYT 70 >1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161 Score = 26.6 bits (58), Expect = 8.9 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 8/80 (10%) Query: 82 LLLPSVSPLKEDPKDISPVIEKEIISQNLSIAQQK--------DEETADKELANTQNFNI 133 L +V+ +D K ISP I +++ + ++ E + N ++ Sbjct: 10 YLFHTVAGKHQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHM 69 Query: 134 KPLLEEIASLKQLISDLSKN 153 + +E+ K ++ K Sbjct: 70 EEEVEDFLLKKPIVPTDGKR 89 >2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A Length = 218 Score = 26.5 bits (58), Expect = 10.0 Identities = 7/65 (10%), Positives = 22/65 (33%), Gaps = 5/65 (7%) Query: 26 SCDVKKITWRKFFWEKILSNKTFFKILALVCVIVLTFIFIFTALFTEKFLRTDNNLLLLP 85 SC + + +W+KI + + ++ + F+ + ++ + + Sbjct: 124 SCKLGETKSHAIYWDKISKL--LLQHITKHVSVL---YCLGKTDFSNIRAKLESPVTTIV 178 Query: 86 SVSPL 90 P Sbjct: 179 GYHPA 183 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.316 0.132 0.364 Gapped Lambda K H 0.267 0.0497 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,757,184 Number of extensions: 124892 Number of successful extensions: 393 Number of sequences better than 10.0: 1 Number of HSP's gapped: 388 Number of HSP's successfully gapped: 42 Length of query: 344 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 251 Effective length of database: 3,438,538 Effective search space: 863073038 Effective search space used: 863073038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 57 (26.3 bits)