RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781034|ref|YP_003065447.1| hypothetical protein
CLIBASIA_04680 [Candidatus Liberibacter asiaticus str. psy62]
         (344 letters)



>d1x3aa1 a.240.1.1 (A:8-94) Synapse associated protein 1, SYAP1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 27.4 bits (61), Expect = 1.7
 Identities = 16/66 (24%), Positives = 25/66 (37%)

Query: 102 EKEIISQNLSIAQQKDEETADKELANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRL 161
           E+ I  Q L+++  K     D       NF+   +      + Q    LSK    +V +L
Sbjct: 4   EETIQQQILALSADKRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMRFALVPKL 63

Query: 162 TKMETL 167
            K E  
Sbjct: 64  VKEEVF 69


>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 477

 Score = 27.2 bits (60), Expect = 2.0
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 7/124 (5%)

Query: 39  WEKILSNKTFFKIL--ALVCVIVLTFIFIFTALFTEKFLRTDNNLLLLPSVSPLKEDPKD 96
                SN    ++   +L+ + +LTF  +F     +K+L    +LL L  ++  KE    
Sbjct: 229 IVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITI-KEKVSR 287

Query: 97  ISPVIEKEIISQNLSIAQQKDEETADKE--LANTQNFNIKPLLEE--IASLKQLISDLSK 152
           +   I  +  S  +   ++  ++       L   Q+ + +   +E     +  L   L  
Sbjct: 288 LCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILEN 347

Query: 153 NYQD 156
            YQ+
Sbjct: 348 EYQE 351


>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 161

 Score = 27.0 bits (59), Expect = 2.2
 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 82  LLLPSVSPLKEDPKDISPVIEKEIISQNLSIAQQK--------DEETADKELANTQNFNI 133
            L  +V+   +D K ISP I   +++   +   ++          E     +    N ++
Sbjct: 10  YLFHTVAGKHQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHM 69

Query: 134 KPLLEEIASLKQLISDLSKN 153
           +  +E+    K ++    K 
Sbjct: 70  EEEVEDFLLKKPIVPTDGKR 89


>d1epwa3 d.92.1.7 (A:1-533) Botulinum neurotoxin {Clostridium
           botulinum, serotype B [TaxId: 1491]}
          Length = 533

 Score = 26.4 bits (58), Expect = 3.4
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 144 KQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRMVSLLILKNALDK---GEYS 196
           K +   + +N++ IV RL K+    ++P  N N     +    K    +   G+YS
Sbjct: 285 KSIYDKVLQNFRGIVDRLNKVLVCISDP--NININIYKNKFKDKYKFVEDSEGKYS 338


>d1t3ca_ d.92.1.7 (A:) Botulinum neurotoxin {Clostridium botulinum,
           serotype E [TaxId: 1491]}
          Length = 411

 Score = 25.9 bits (57), Expect = 4.8
 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 97  ISPVIEKEIISQNLSIAQQKDEETADKEL--ANTQNFNIKPLLEEIASLKQLISDLSKNY 154
              +  K  I+Q  +        T  +E       + NI    +       + ++L  +Y
Sbjct: 223 AKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIITSAQS----NDIYTNLLADY 278

Query: 155 QDIVTRLTKMETLTAN 170
           + I ++L+K++     
Sbjct: 279 KKIASKLSKVQVSNPL 294


>d2giab1 d.18.1.4 (B:28-173) GBP21 {Trypanosoma brucei [TaxId:
           5691]}
          Length = 146

 Score = 25.8 bits (56), Expect = 5.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 78  DNNLLLL---PSVSPLKEDPKDISPVIEKE 104
           D  LLL+   P + P K DP D+SP  + +
Sbjct: 25  DGKLLLISQYPQLGPRKVDPNDLSPQFDAD 54


>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system
          permease protein WtpB (ModB) {Archaeoglobus fulgidus
          [TaxId: 2234]}
          Length = 252

 Score = 25.3 bits (54), Expect = 8.1
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 48 FFKILALVCVIVLTFIFI-FTALFTEKFLRTDN 79
          F  +LAL+  I+L F+ +   A  T +    D 
Sbjct: 5  FSALLALLSSIILLFVLLPVAATVTLQLFNFDE 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,198,536
Number of extensions: 55699
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 13
Length of query: 344
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,226,816
Effective search space: 316518528
Effective search space used: 316518528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)