RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781036|ref|YP_003065449.1| hypothetical protein
CLIBASIA_04690 [Candidatus Liberibacter asiaticus str. psy62]
         (65 letters)



>2uvj_A TOGB, ABC type periplasmic sugar-binding protein;
           periplasmic binding protein, pectin degradation,
           trigalacturonic acid; HET: ADA; 1.8A {Yersinia
           enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A
           (A:1-117,A:285-340)
          Length = 173

 Score = 27.2 bits (60), Expect = 0.77
 Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 10/57 (17%)

Query: 14  LSRYVKSGVF-NLDSLLV------DFSVSLKEHFFD---TYSIPWHSIFYFVSENSK 60
           L  + K G        +        F     +          IP  +    + +++K
Sbjct: 72  LPIFSKDGTGFYNLFSVKEQLDLAQFDPKELQQTTVNGKLNGIPISAQMLSIGKSTK 128


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.325    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 498,185
Number of extensions: 15705
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 2
Length of query: 65
Length of database: 4,956,049
Length adjustment: 33
Effective length of query: 32
Effective length of database: 3,840,484
Effective search space: 122895488
Effective search space used: 122895488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.3 bits)