BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781036|ref|YP_003065449.1| hypothetical protein
CLIBASIA_04690 [Candidatus Liberibacter asiaticus str. psy62]
         (65 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781036|ref|YP_003065449.1| hypothetical protein CLIBASIA_04690 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 65

 Score =  133 bits (335), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1  MWIAPFGSLGVAVLSRYVKSGVFNLDSLLVDFSVSLKEHFFDTYSIPWHSIFYFVSENSK 60
          MWIAPFGSLGVAVLSRYVKSGVFNLDSLLVDFSVSLKEHFFDTYSIPWHSIFYFVSENSK
Sbjct: 1  MWIAPFGSLGVAVLSRYVKSGVFNLDSLLVDFSVSLKEHFFDTYSIPWHSIFYFVSENSK 60

Query: 61 EYCKK 65
          EYCKK
Sbjct: 61 EYCKK 65


>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 957

 Score = 23.5 bits (49), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 48 WHSIFYFVSENSKEY 62
          W+ +F F+ ENS+EY
Sbjct: 41 WYPLFSFLDENSEEY 55


>gi|254781095|ref|YP_003065508.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 318

 Score = 21.9 bits (45), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 14  LSRYVKSGVFNLDSLLVDFSVSLKEHFFDTYSIPWHSIF 52
           L   V+  VFN   +L+++ +     FFD   +    IF
Sbjct: 280 LGEQVRKKVFNQSGILLEWEIKRLGDFFDHQIVDATKIF 318


>gi|254780956|ref|YP_003065369.1| thymidylate synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 264

 Score = 20.0 bits (40), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 47  PWHSIFYFVSENSKEYCK 64
           P H +F F  +N K  C+
Sbjct: 145 PCHCLFQFYVDNGKLSCQ 162


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.139    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,931
Number of Sequences: 1233
Number of extensions: 1614
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 65
length of database: 328,796
effective HSP length: 36
effective length of query: 29
effective length of database: 284,408
effective search space:  8247832
effective search space used:  8247832
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 31 (16.5 bits)