HHsearch alignment for GI: 254781037 and conserved domain: pfam03180
>pfam03180 Lipoprotein_9 NLPA lipoprotein. This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to pfam00497 which are solute binding proteins.
Probab=93.41 E-value=0.31 Score=28.30 Aligned_cols=193 Identities=17% Similarity=0.169 Sum_probs=101.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 89970798888999999999999740899833899999732741158755674862269999999987098369974034
Q gi|254781037|r 6 FRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSAK 85 (307)
Q Consensus 6 i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSlK 85 (307)
T Consensus 1 lkvG~~~~p~~~i~-~~v~~~~~~~----Gi~veiv~F~---Dy~~----------------pN~AL~~GeIDaN~--fQ 54 (236)
T pfam03180 1 LKVGATPGPHAEVL-EVAKPLAKKK----GLDLEIVEFT---DYVQ----------------PNTALADGEIDANA--FQ 54 (236)
T ss_pred CEEEECCCCHHHHH-HHHHHHHHHC----CCEEEEEEEC---CCCC----------------HHHHHHCCCCCHHH--HC
T ss_conf 98964389769999-9999999964----9879999816---8645----------------50797789955244--43
Q ss_pred CCCC----CCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCC----CCHHHHHHHHH------CC----CCC
Q ss_conf 3211----101221012223656831056652432433245673220475----30288899842------37----731
Q gi|254781037|r 86 DMPT----KLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSS----LRRKALLLRWR------SD----ISV 147 (307)
Q Consensus 86 DlP~----~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS----~RR~aql~~~~------p~----l~~ 147 (307)
T Consensus 55 H~~yl~~~n~~~g~~L~~v~~~~~~p~glYS~k~ksl~~lp~Ga~IaIpnD~sN~~RAL~lL~~aGLI~Lk~~~~~~~t~ 134 (236)
T pfam03180 55 HLPYLDQFNKEGGLDLVAVGNTHVEPIGLYSKKYKSLSELPDGATIAVPNDPSNEGRALLLLEKAGLIKLKDGAGLLATV 134 (236)
T ss_pred CHHHHHHHHHHCCCCEEEEEEEEECCEEEEECCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCCCCH
T ss_conf 89999999997799679963046723795433768875857999898158844299999999988988976899987898
Q ss_pred HHHCCCH---------HHH-HHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEC---CCCHH
Q ss_conf 0330767---------999-9986378765563014545421621122233686673585432078999852---76124
Q gi|254781037|r 148 IDFRGKI---------ETR-LNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHV---NNPKA 214 (307)
Q Consensus 148 ~~iRGNv---------~TR-l~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~---~d~~i 214 (307)
T Consensus 135 ~DI~~Npk~l~~~ev~a~ql~~~l--~dvD~avin~n~a~~agl~p~~~~l~~e----~~~~~y~n~ivvr~~~~d~~~i 208 (236)
T pfam03180 135 KDITENPKNLKIKELEAAQLPRAL--DDVDAAVINTNYALQAGLDPKKDALFEE----DKDSPYVNIIVVREDDKDDPAV 208 (236)
T ss_pred HHHHHCCCCCEEEEECHHHHHHHC--CCCCEEEECHHHHHHCCCCHHHHHHHCC----CCCCCEEEEEEEECCCCCCHHH
T ss_conf 889728677669991677755421--6657899865679887949212133147----8899837999981777699999
Q ss_pred HHHHHHHCCHHHHHHH
Q ss_conf 5567762397888887
Q gi|254781037|r 215 QELVKVINHEDTWDSV 230 (307)
Q Consensus 215 ~~il~~Ind~~T~~~v 230 (307)
T Consensus 209 k~l~e~~~s~~vk~~i 224 (236)
T pfam03180 209 KKLVKAYQSEEVKAFI 224 (236)
T ss_pred HHHHHHHCCHHHHHHH
T ss_conf 9999998799999999