HHsearch alignment for GI: 254781037 and conserved domain: pfam03180

>pfam03180 Lipoprotein_9 NLPA lipoprotein. This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to pfam00497 which are solute binding proteins.
Probab=93.41  E-value=0.31  Score=28.30  Aligned_cols=193  Identities=17%  Similarity=0.169  Sum_probs=101.9

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             89970798888999999999999740899833899999732741158755674862269999999987098369974034
Q gi|254781037|r    6 FRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSAK   85 (307)
Q Consensus         6 i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSlK   85 (307)
T Consensus         1 lkvG~~~~p~~~i~-~~v~~~~~~~----Gi~veiv~F~---Dy~~----------------pN~AL~~GeIDaN~--fQ   54 (236)
T pfam03180         1 LKVGATPGPHAEVL-EVAKPLAKKK----GLDLEIVEFT---DYVQ----------------PNTALADGEIDANA--FQ   54 (236)
T ss_pred             CEEEECCCCHHHHH-HHHHHHHHHC----CCEEEEEEEC---CCCC----------------HHHHHHCCCCCHHH--HC
T ss_conf             98964389769999-9999999964----9879999816---8645----------------50797789955244--43


Q ss_pred             CCCC----CCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCC----CCHHHHHHHHH------CC----CCC
Q ss_conf             3211----101221012223656831056652432433245673220475----30288899842------37----731
Q gi|254781037|r   86 DMPT----KLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSS----LRRKALLLRWR------SD----ISV  147 (307)
Q Consensus        86 DlP~----~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS----~RR~aql~~~~------p~----l~~  147 (307)
T Consensus        55 H~~yl~~~n~~~g~~L~~v~~~~~~p~glYS~k~ksl~~lp~Ga~IaIpnD~sN~~RAL~lL~~aGLI~Lk~~~~~~~t~  134 (236)
T pfam03180        55 HLPYLDQFNKEGGLDLVAVGNTHVEPIGLYSKKYKSLSELPDGATIAVPNDPSNEGRALLLLEKAGLIKLKDGAGLLATV  134 (236)
T ss_pred             CHHHHHHHHHHCCCCEEEEEEEEECCEEEEECCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCCCCH
T ss_conf             89999999997799679963046723795433768875857999898158844299999999988988976899987898


Q ss_pred             HHHCCCH---------HHH-HHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEC---CCCHH
Q ss_conf             0330767---------999-9986378765563014545421621122233686673585432078999852---76124
Q gi|254781037|r  148 IDFRGKI---------ETR-LNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHV---NNPKA  214 (307)
Q Consensus       148 ~~iRGNv---------~TR-l~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~---~d~~i  214 (307)
T Consensus       135 ~DI~~Npk~l~~~ev~a~ql~~~l--~dvD~avin~n~a~~agl~p~~~~l~~e----~~~~~y~n~ivvr~~~~d~~~i  208 (236)
T pfam03180       135 KDITENPKNLKIKELEAAQLPRAL--DDVDAAVINTNYALQAGLDPKKDALFEE----DKDSPYVNIIVVREDDKDDPAV  208 (236)
T ss_pred             HHHHHCCCCCEEEEECHHHHHHHC--CCCCEEEECHHHHHHCCCCHHHHHHHCC----CCCCCEEEEEEEECCCCCCHHH
T ss_conf             889728677669991677755421--6657899865679887949212133147----8899837999981777699999


Q ss_pred             HHHHHHHCCHHHHHHH
Q ss_conf             5567762397888887
Q gi|254781037|r  215 QELVKVINHEDTWDSV  230 (307)
Q Consensus       215 ~~il~~Ind~~T~~~v  230 (307)
T Consensus       209 k~l~e~~~s~~vk~~i  224 (236)
T pfam03180       209 KKLVKAYQSEEVKAFI  224 (236)
T ss_pred             HHHHHHHCCHHHHHHH
T ss_conf             9999998799999999